FFCP PHASE1:Mm9::chr3:115710375..115710458,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=58193 | |EntrezGene=58193 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q9ES89,Q3TSR0 | |UniProt=Q9ES89,Q3TSR0 | ||
|association_with_transcript=0bp_to_ENSMUST00000029575,ENSMUST00000106501,ENSMUST00000128228,ENSMUST00000145945_5end | |association_with_transcript=0bp_to_ENSMUST00000029575,ENSMUST00000106501,ENSMUST00000128228,ENSMUST00000145945_5end | ||
|cluster_id=chr3:115710375..115710458,+ | |||
|description=CAGE_peak_2_at_Extl2_5end | |description=CAGE_peak_2_at_Extl2_5end | ||
|id=chr3:115710375..115710458,+ | |id=chr3:115710375..115710458,+ | ||
|ontology_enrichment_celltype=CL:0000393!1.65e-11!39;CL:0000211!1.65e-11!39;CL:0000055!2.65e-11!50;CL:0000221!1.54e-09!44;CL:0000133!1.54e-09!44;CL:0002319!3.01e-09!43;CL:0000540!1.32e-08!33;CL:0000047!1.32e-08!33;CL:0000031!1.32e-08!33;CL:0000404!1.32e-08!33;CL:0000117!5.36e-07!23;CL:0000337!5.36e-07!23 | |ontology_enrichment_celltype=CL:0000393!1.65e-11!39;CL:0000211!1.65e-11!39;CL:0000055!2.65e-11!50;CL:0000221!1.54e-09!44;CL:0000133!1.54e-09!44;CL:0002319!3.01e-09!43;CL:0000540!1.32e-08!33;CL:0000047!1.32e-08!33;CL:0000031!1.32e-08!33;CL:0000404!1.32e-08!33;CL:0000117!5.36e-07!23;CL:0000337!5.36e-07!23 | ||
|ontology_enrichment_celltype_v019_2=CL:0000393,1.65e-11,39;CL:0000211,1.65e-11,39;CL:0000221,1.53e-09,44;CL:0000133,1.53e-09,44;CL:0002319,3.00e-09,43;CL:0000540,1.32e-08,33;CL:0000047,1.32e-08,33;CL:0000031,1.32e-08,33;CL:0000404,1.32e-08,33;CL:0000117,5.35e-07,23;CL:0000337,5.35e-07,23 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.43e-22!75;UBERON:0001016!3.43e-22!75;UBERON:0001017!2.69e-21!73;UBERON:0005743!2.69e-21!73;UBERON:0004121!7.70e-20!102;UBERON:0000924!7.70e-20!102;UBERON:0006601!7.70e-20!102;UBERON:0002346!6.57e-18!71;UBERON:0003075!6.57e-18!71;UBERON:0007284!6.57e-18!71;UBERON:0001049!2.47e-16!52;UBERON:0005068!2.47e-16!52;UBERON:0006241!2.47e-16!52;UBERON:0007135!2.47e-16!52;UBERON:0000955!3.66e-15!50;UBERON:0006238!3.66e-15!50;UBERON:0000033!5.32e-15!63;UBERON:0002616!6.55e-15!49;UBERON:0004111!5.56e-13!122;UBERON:0000025!8.49e-13!114;UBERON:0002020!2.38e-12!34;UBERON:0003080!7.71e-12!40;UBERON:0003056!2.56e-11!49;UBERON:0002780!3.03e-11!39;UBERON:0001890!3.03e-11!39;UBERON:0006240!3.03e-11!39;UBERON:0002791!1.02e-09!29;UBERON:0003528!1.02e-09!29;UBERON:0001893!1.02e-09!29;UBERON:0007811!4.84e-08!86;UBERON:0000956!2.70e-07!21;UBERON:0001869!2.70e-07!21;UBERON:0000203!2.70e-07!21;UBERON:0002021!7.51e-07!10;UBERON:0000411!7.51e-07!10;UBERON:0001950!7.51e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.42e-22,75;UBERON:0010314,7.23e-22,92;UBERON:0001017,2.68e-21,73;UBERON:0004121,5.73e-18,95;UBERON:0000924,5.73e-18,95;UBERON:0006601,5.73e-18,95;UBERON:0000073,1.06e-17,54;UBERON:0001049,2.47e-16,52;UBERON:0005068,2.47e-16,52;UBERON:0006241,2.47e-16,52;UBERON:0007135,2.47e-16,52;UBERON:0002346,2.98e-16,64;UBERON:0003075,2.98e-16,64;UBERON:0007284,2.98e-16,64;UBERON:0010371,4.92e-14,73;UBERON:0000955,3.21e-13,47;UBERON:0006238,3.21e-13,47;UBERON:0004111,5.14e-13,122;UBERON:0002616,5.67e-13,46;UBERON:0000025,7.84e-13,114;UBERON:0002020,2.37e-12,34;UBERON:0003080,7.70e-12,40;UBERON:0003056,2.56e-11,49;UBERON:0002780,3.02e-11,39;UBERON:0001890,3.02e-11,39;UBERON:0006240,3.02e-11,39;UBERON:0003528,1.02e-09,29;UBERON:0002791,1.02e-09,29;UBERON:0001893,1.02e-09,29;UBERON:0000956,2.70e-07,21;UBERON:0001869,2.70e-07,21;UBERON:0000203,2.70e-07,21;UBERON:0002021,7.50e-07,10;UBERON:0000411,7.50e-07,10;UBERON:0001950,7.50e-07,10 | |||
|phase1_expression=10.089377367602,1.04692622291808,2.27499619694768,0.30246421130683,1.00179145989269,0.839396359559449,0.934450562382103,2.58246646883153,6.89864738543167,7.2560003159818,6.33506482434368,6.94017783259427,3.25281386869291,2.71003247498892,0.999329285446988,0.607425802169478,0.699561878128147,1.26184866143295,1.50825876966313,1.69755860719212,5.6128571499706,2.97872853602656,3.6567970479451,1.91990907352088,1.83527424853736,0.57423196411502,0.86152399231815,1.72376986148711,2.47030445293286,1.26015064879965,1.33038306393183,5.71527606113668,3.07532393792285,15.8481681015439,1.44425809875637,1.99481574430191,2.6542016314108,6.27797446105362,3.1253413780952,5.23523743973798,7.64700934440319,3.41522742479223,2.42755176515577,14.604030885167,14.192770370732,12.4811791469943,3.12956537739216,2.61630187656536,5.27246838562732,8.94377535741704,4.4795654920116,5.75010257459886,1.51004345451963,4.35217285206807,3.36093799142464,10.0331180054019,11.1748041576115,11.8604581223812,5.05791152148994,4.23192783417626,5.70448263155561,5.76035704517525,1.77858959222228,4.04954872776629,4.94433181283487,3.5524005747305,5.69240209984969,4.2264013585371,5.18448061542388,5.53524347159932,4.41682418837902,13.9968982357864,17.6694832761291,4.89963196859816,4.2172007248024,3.67687514644008,30.8324466798288,20.5576614317152,21.8121277223866,4.08847491963601,4.20843160571084,5.73004707612436,20.3803589271008,17.4456409109821,15.4326230254578,15.3206864446307,14.3795397607094,7.45597783301202,6.73963120665338,8.31287161174641,15.0729534124872,1.72084775396277,0,7.01614149129162,5.84798775702902,6.72040330646003,3.93244376368905,5.45377032249785,5.19572009205738,7.77347063922748,6.61964072950398,7.69958864485907,2.54805239706646,0,4.5463118612355,3.29367825117628,4.54972000513305,2.8545969929765,3.36619248741323,4.89859058913922,5.89850111004862,5.1759131313064,6.6878494204257,7.08396410597326,6.93773372100658,4.52399728786832,1.48316980640624,5.06097749219691,2.65383165584962,5.17653919831709,2.20841518460394,4.363877278217,0,12.0040126774734,13.1951425292477,2.81002760729451,2.63593273913025,4.79922184794726,2.41433431438823,17.6752954497691,12.3525162761029,7.28795242254614,14.0797699355744,16.8772201838018,18.4931359658008,15.8996437806402,8.45266719957625,3.85661608891288,2.52722758433675,3.36706969418358,4.81445638962004,2.75882525320168,3.06105620669094,4.06903008156431,6.53150391852747,6.66191345481219,6.09061209638237,4.9153640440413,1.72454394346274,2.26927296201383,2.63926686245923,2.41115305670332,2.50242524303038,3.83077383174383,2.88094990971121,2.38841120182192,1.40442637462647,2.31613116403244,2.84163499395593,4.34964122324554,5.8631514995274,3.96136535214233,4.49814997611899,4.52557733019029,5.09081472528348,3.25547522650571,4.82892122519315,6.07179780309281,7.89887279584706,5.58169377868924,5.51267904911819,4.09359964790931,5.70830299756732,6.57611451925822,10.5144974282064,3.91037527041281,0.660837565967596,1.32225283331772,3.62590025909898,2.78684006232526,4.51036114627327,4.03367049246685,3.55804870151792,4.75564065281398,2.37264530772256,4.44687177754829,2.76468729680296,5.57078121715222,4.67913809085888,2.69645822596266,1.94524244887225,3.58454291857861,2.84501851429623,3.77020091612105,1.1270773567308,3.05476991767971,2.90928730751439,5.6810014111158,5.31186911843761,5.60918562322488,6.43694784149637,7.15703550746443,7.11486305009157,2.00214126859313,2.55526693647164,1.12431056192427,1.01430060694251,1.68824011826692,1.78238096246994,3.45235364940973,2.59416362840057,1.92192989231657,0,4.83783231969054,4.05648975048929,4.04126204715379,3.58794827043824,12.5435315554475,3.32555742299888,2.27389694124582,3.7481944581666,4.07388205860452,3.98973422090454,2.1775813467436,3.09456733151818,2.73187107000918,4.09851374676097,4.65075848262427,4.78364305972461,3.11340297959902,3.7990696010497,4.62876987460837,3.01582567878545,2.71952841909355,2.95058563811422,3.86311444826625,22.9587343682543,18.9882932279369,7.70494243270374,7.32165688892682,5.99465616890888,5.46614242015294,4.52389135238878,5.9742199488138,4.23317480756549,3.96307143104365,5.26253912177363,7.01414058987149,7.90575555893047,5.78378369559253,5.67760340833074,6.7664929393557,7.65568708961808,6.76377504187395,0,2.42780636154981,2.41858845571801,2.82907619633847,3.54362271456927,1.53717573971964,5.68542244970086,3.27180356529755,3.56497378384721,2.84433082142234,4.21674434299995,4.12542172992747,7.83011093233712,3.6012218806262,3.10460841078611,4.28674070063185,4.78818630834139,5.17269571046005,7.24015690649332,7.91608867697958,4.22409074514679,4.2366414172764,1.54369878638473,1.97863503529776,3.06782410722221,2.47282992205439,3.70054266409723,2.9545361954111,2.91480836629851,21.1384844291981,1.70870880797853,5.15967169908056,2.96311243791539,0.941842285023455,1.0935538217682,1.14389086603261,3.0596117398894,3.91864066506242,3.86959926652387,2.86401185404534,2.53068794864908,3.86306987541013,3.24016022465404,4.80903080833278,3.0570758924464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| ||
|short_description=p2@Extl2 | |short_description=p2@Extl2 | ||
}} | }} |
Latest revision as of 11:46, 1 October 2015
Short description: | p2@Extl2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Extl2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000029575, ENSMUST00000106501, ENSMUST00000128228, ENSMUST00000145945_5end |
EntrezGene: | Extl2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 1.65e-11 | 39 |
electrically active cell | 1.65e-11 | 39 |
ectodermal cell | 1.53e-09 | 44 |
neurectodermal cell | 1.53e-09 | 44 |
neural cell | 3.00e-09 | 43 |
neuron | 1.32e-08 | 33 |
neuronal stem cell | 1.32e-08 | 33 |
neuroblast | 1.32e-08 | 33 |
electrically signaling cell | 1.32e-08 | 33 |
CNS neuron (sensu Vertebrata) | 5.35e-07 | 23 |
neuroblast (sensu Vertebrata) | 5.35e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
nervous system | 3.42e-22 | 75 |
structure with developmental contribution from neural crest | 7.23e-22 | 92 |
central nervous system | 2.68e-21 | 73 |
ectoderm-derived structure | 5.73e-18 | 95 |
ectoderm | 5.73e-18 | 95 |
presumptive ectoderm | 5.73e-18 | 95 |
regional part of nervous system | 1.06e-17 | 54 |
neural tube | 2.47e-16 | 52 |
neural rod | 2.47e-16 | 52 |
future spinal cord | 2.47e-16 | 52 |
neural keel | 2.47e-16 | 52 |
neurectoderm | 2.98e-16 | 64 |
neural plate | 2.98e-16 | 64 |
presumptive neural plate | 2.98e-16 | 64 |
ecto-epithelium | 4.92e-14 | 73 |
brain | 3.21e-13 | 47 |
future brain | 3.21e-13 | 47 |
anatomical conduit | 5.14e-13 | 122 |
regional part of brain | 5.67e-13 | 46 |
tube | 7.84e-13 | 114 |
gray matter | 2.37e-12 | 34 |
anterior neural tube | 7.70e-12 | 40 |
pre-chordal neural plate | 2.56e-11 | 49 |
regional part of forebrain | 3.02e-11 | 39 |
forebrain | 3.02e-11 | 39 |
future forebrain | 3.02e-11 | 39 |
brain grey matter | 1.02e-09 | 29 |
regional part of telencephalon | 1.02e-09 | 29 |
telencephalon | 1.02e-09 | 29 |
cerebral cortex | 2.70e-07 | 21 |
cerebral hemisphere | 2.70e-07 | 21 |
pallium | 2.70e-07 | 21 |
occipital lobe | 7.50e-07 | 10 |
visual cortex | 7.50e-07 | 10 |
neocortex | 7.50e-07 | 10 |