Personal tools

UBERON:0001851: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0001851
|alt_id=UBERON:FMA_61109-XAO_0000216
|name=cortex
|anatomical_img_id=FMA:61109
|namespace=
|def="Outermost layer of an organ[WP]." [Wikipedia:Cortex_(anatomy)]
|xref=AAO:0010327;;EFO:0000383;;EHDAA:9344;;EMAPA:18427;;FMA:61109;;galen:Cortex
|is_a=UBERON:0000064
|synonym=
|comment=This class is used in a very general sense
|comment=This class is used in a very general sense
|alt_id=UBERON:FMA_61109-XAO_0000216
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Outermost layer of an organ[WP]." [Wikipedia:Cortex_(anatomy)]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001851
|is_a=UBERON:0000064
|is_obsolete=
|located_in=
|located_in=
|name=cortex
|namespace=
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym=
|union_of=
|xref=AAO:0010327;;EFO:0000383;;EHDAA:9344;;EMAPA:18427;;FMA:61109;;galen:Cortex
}}
}}

Revision as of 18:39, 29 November 2012

Name:cortex
Definition:"Outermost layer of an organ[WP]." [Wikipedia:Cortex_(anatomy)]
Xrefs:
links:

AAO:0010327
EFO:0000383
EHDAA:9344
EMAPA:18427
FMA:61109

galen:Cortex
Comments:This class is used in a very general sense
Alt_id: UBERON:FMA_61109-XAO_0000216
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000064(organ part)



Children

is a:UBERON:0001225 (cortex of kidney),UBERON:0001235 (adrenal cortex)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001851 (cortex), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.62e-46FFCP PHASE2:Hg19::chr2:693380..693398,+#_19f29cc3a4ac6839a4c94a5b08dac32cp@chr2:693380..693398, +
2.62e-46FFCP PHASE1:Hg19::chr2:693380..693398,+#_19f29cc3a4ac6839a4c94a5b08dac32cp@chr2:693380..693398, +
7.47e-44FFCP PHASE1:Mm9::chr2:121125219..121125237,+#_dd1393f275117ddd64e14f6df803ddcep@chr2:121125219..121125237, +
7.47e-44FFCP PHASE1:Mm9::chr13:42799452..42799454,+#_dd1393f275117ddd64e14f6df803ddcep@chr13:42799452..42799454, +
7.47e-44FFCP PHASE2:Mm9::chr2:121125219..121125237,+#_dd1393f275117ddd64e14f6df803ddcep@chr2:121125219..121125237, +
7.47e-44FFCP PHASE2:Mm9::chr13:42799452..42799454,+#_dd1393f275117ddd64e14f6df803ddcep@chr13:42799452..42799454, +
1.83e-41FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_3d3a609c9376b2498ebee048cced6cb1p7@HOXA10
1.83e-41FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_3d3a609c9376b2498ebee048cced6cb1p7@HOXA10
2.9e-40FFCP PHASE2:Hg19::chr1:20465872..20465881,+#_b275fa55781d89b493eb0cd21b0d6c15p2@PLA2G2F
2.9e-40FFCP PHASE1:Hg19::chr1:20465872..20465881,+#_b275fa55781d89b493eb0cd21b0d6c15p2@PLA2G2F
3.14e-40FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_b342c68cd0ec1bcb14abedec7add0b3fp@chr5:74244100..74244117, +
3.14e-40FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_b342c68cd0ec1bcb14abedec7add0b3fp@chr5:74244100..74244117, +
8.64e-38FFCP PHASE2:Hg19::chr20:6034607..6034616,-#_066b981cd2a9279169c24bc45b915b93p6@LRRN4
8.64e-38FFCP PHASE1:Hg19::chr20:6034607..6034616,-#_066b981cd2a9279169c24bc45b915b93p6@LRRN4
4.37e-33FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_c133c9d6c864c1e16c9eab6cb4cc8f55p@chr16:86768403..86768437, +
4.37e-33FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_c133c9d6c864c1e16c9eab6cb4cc8f55p@chr16:86768403..86768437, +
5.17e-33FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_0f790eb1acaab601989f19c63a3c8757p4@MEGF11
5.17e-33FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_0f790eb1acaab601989f19c63a3c8757p4@MEGF11
1.41e-32FFCP PHASE2:Hg19::chr20:6034828..6034857,-#_78a8d3e749da6e25d858dbda89d1bf48p5@LRRN4
1.41e-32FFCP PHASE1:Hg19::chr20:6034828..6034857,-#_78a8d3e749da6e25d858dbda89d1bf48p5@LRRN4
2.19e-32FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_5fe1260cf89e32319a575a490ff512f6p1@ENST00000413103
2.19e-32FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_5fe1260cf89e32319a575a490ff512f6p1@ENST00000413103
1.24e-31FFCP PHASE1:Hg19::chr7:140227303..140227330,-#_1c4b0d581f61600282f958f210fcdc3ap@chr7:140227303..140227330, -
1.24e-31FFCP PHASE2:Hg19::chr7:140227303..140227330,-#_1c4b0d581f61600282f958f210fcdc3ap@chr7:140227303..140227330, -
1.28e-31FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_d0a061895c2689d287b3d40e1aab208fp3@PAX2
1.28e-31FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_d0a061895c2689d287b3d40e1aab208fp3@PAX2
2.16e-31FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_5317dea0abbf321056dedcc588e25c2ap@chr18:3456189..3456200, +
2.16e-31FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_5317dea0abbf321056dedcc588e25c2ap@chr18:3456189..3456200, +
3.34e-31FFCP PHASE2:Hg19::chr20:6034672..6034714,-#_66062a0b7a15ccfff02a66e34df0b015p2@LRRN4
3.34e-31FFCP PHASE1:Hg19::chr20:6034672..6034714,-#_66062a0b7a15ccfff02a66e34df0b015p2@LRRN4
4.51e-31FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_3ec3482227165cbc9056a005ba0fa686p7@LRRN4
4.51e-31FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_3ec3482227165cbc9056a005ba0fa686p7@LRRN4
1.31e-30FFCP PHASE2:Hg19::chr6:30890456..30890482,+#_3827c04dc085b1d89827595408c18adfp11@VARS2
1.31e-30FFCP PHASE1:Hg19::chr6:30890456..30890482,+#_3827c04dc085b1d89827595408c18adfp11@VARS2
1.81e-30FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_df00d3202a6224980a2cc9812369cb3ep@chr2:120409486..120409492, +
1.81e-30FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_df00d3202a6224980a2cc9812369cb3ep@chr2:120409486..120409492, +
2.45e-30FFCP PHASE2:Hg19::chr20:6031540..6031548,-#_19c033ceb75b48159318749993b7c646p@chr20:6031540..6031548, -
2.45e-30FFCP PHASE1:Hg19::chr20:6031540..6031548,-#_19c033ceb75b48159318749993b7c646p@chr20:6031540..6031548, -
5.62e-30FFCP PHASE1:Mm9::chr3:67868320..67868329,+#_64abea5b910adbe8f9a0d14034edfa83p16@Schip1
5.62e-30FFCP PHASE2:Mm9::chr3:67868320..67868329,+#_64abea5b910adbe8f9a0d14034edfa83p16@Schip1
7.99e-30FFCP PHASE2:Hg19::chr20:6034576..6034592,-#_01df0203a14a7aed37d53757f991a0c0p3@LRRN4
7.99e-30FFCP PHASE1:Hg19::chr20:6034576..6034592,-#_01df0203a14a7aed37d53757f991a0c0p3@LRRN4
1.1e-29FFCP PHASE2:Mm9::chr14:66589447..66589458,+#_1cfb4c57d95eb27af4376095072e4864p15@Clu
1.1e-29FFCP PHASE1:Mm9::chr19:4711358..4711361,+#_1cfb4c57d95eb27af4376095072e4864p19@Spnb3
1.1e-29FFCP PHASE1:Mm9::chr11:68904990..68905000,+#_1cfb4c57d95eb27af4376095072e4864p@chr11:68904990..68905000, +
1.1e-29FFCP PHASE1:Mm9::chr10:74787727..74787734,+#_1cfb4c57d95eb27af4376095072e4864p@chr10:74787727..74787734, +
1.1e-29FFCP PHASE2:Mm9::chr11:68904990..68905000,+#_1cfb4c57d95eb27af4376095072e4864p@chr11:68904990..68905000, +
1.1e-29FFCP PHASE1:Mm9::chr14:66589447..66589458,+#_1cfb4c57d95eb27af4376095072e4864p15@Clu
1.1e-29FFCP PHASE1:Mm9::chr5:14677450..14677452,+#_1cfb4c57d95eb27af4376095072e4864p@chr5:14677450..14677452, +
1.1e-29FFCP PHASE2:Mm9::chr5:14677450..14677452,+#_1cfb4c57d95eb27af4376095072e4864p@chr5:14677450..14677452, +
1.1e-29FFCP PHASE2:Mm9::chr10:74787727..74787734,+#_1cfb4c57d95eb27af4376095072e4864p@chr10:74787727..74787734, +
1.1e-29FFCP PHASE2:Mm9::chr19:4711358..4711361,+#_1cfb4c57d95eb27af4376095072e4864p19@Spnb3
1.64e-29FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_67fdc08b1b4138d3187e60e57ce43f4dp@chr1:1100457..1100470, +
1.64e-29FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_67fdc08b1b4138d3187e60e57ce43f4dp@chr1:1100457..1100470, +
2.04e-29FFCP PHASE2:Hg19::chr20:6033532..6033548,-#_dca85e017ce52c51da6e596828ce0ec5p2@AB527789
2.04e-29FFCP PHASE1:Hg19::chr20:6033532..6033548,-#_dca85e017ce52c51da6e596828ce0ec5p2@AB527789
4.95e-28FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_9712923f191bcf7b328a2eeda4b25453p4@AIF1L
4.95e-28FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_9712923f191bcf7b328a2eeda4b25453p4@AIF1L
6.27e-28FFCP PHASE2:Hg19::chr17:36104873..36104903,-#_5971d9541c951a6c67d16b944f031c51p3@HNF1B
6.27e-28FFCP PHASE1:Hg19::chr17:36104873..36104903,-#_5971d9541c951a6c67d16b944f031c51p3@HNF1B
9.11e-28FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_4702e7158b5c8a941b0a9de110ec741dp2@PAX2
9.11e-28FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_4702e7158b5c8a941b0a9de110ec741dp2@PAX2
1.1e-27FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_368b18d9445aab8b8709a55c1fa49596p4@PAX2
1.1e-27FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_368b18d9445aab8b8709a55c1fa49596p4@PAX2
1.82e-27FFCP PHASE2:Hg19::chr5:167718782..167718785,+#_f2766c2bf6b4f7a40c257eefa3d1feb5p10@WWC1
1.82e-27FFCP PHASE1:Hg19::chr5:167718782..167718785,+#_f2766c2bf6b4f7a40c257eefa3d1feb5p10@WWC1
6.42e-26FFCP PHASE1:Hg19::chr16:3068288..3068312,-#_550bc94a50897d8b6c0aaae7c67df954p2@CLDN6
6.42e-26FFCP PHASE2:Hg19::chr16:3068288..3068312,-#_550bc94a50897d8b6c0aaae7c67df954p2@CLDN6
1.1e-25FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_d9335292dda9476a1a55b2bdd45e1a1fp@chr7:140227349..140227360, -
1.1e-25FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_d9335292dda9476a1a55b2bdd45e1a1fp@chr7:140227349..140227360, -
2.38e-25FFCP PHASE1:Hg19::chr17:27970385..27970397,-#_7fdb0f1df4b65befb9258c461c114c3fp@chr17:27970385..27970397, -
2.38e-25FFCP PHASE2:Hg19::chr17:27970385..27970397,-#_7fdb0f1df4b65befb9258c461c114c3fp@chr17:27970385..27970397, -
1.31e-24FFCP PHASE2:Hg19::chr6:24358114..24358125,-#_31660bec895135d2cf8263f4dd45e027p4@DCDC2
1.31e-24FFCP PHASE1:Hg19::chr6:24358114..24358125,-#_31660bec895135d2cf8263f4dd45e027p4@DCDC2
1.65e-24FFCP PHASE2:Hg19::chr20:6033140..6033181,-#_6fe0e186632e4fe5f626c2c1c12eba99p1@AB527789
1.65e-24FFCP PHASE1:Hg19::chr20:6033140..6033181,-#_6fe0e186632e4fe5f626c2c1c12eba99p1@AB527789
2.09e-24FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_ad7747ac634ef19e5cfffb4497de2ee7p@chr15:85403302..85403304, +
2.09e-24FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_ad7747ac634ef19e5cfffb4497de2ee7p@chr15:85403302..85403304, +
4.61e-24FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_de30332a0a82a216ab083612859519afp2@B3GALT5
4.61e-24FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_de30332a0a82a216ab083612859519afp2@B3GALT5
7.08e-24FFCP PHASE1:Hg19::chr19:50390837..50390847,+#_94a0aa4ea4b373d6f06de96b1fb06c06p@chr19:50390837..50390847, +
7.08e-24FFCP PHASE2:Hg19::chr19:50390837..50390847,+#_94a0aa4ea4b373d6f06de96b1fb06c06p@chr19:50390837..50390847, +
1.16e-23FFCP PHASE2:Hg19::chr17:171147..171161,+#_43abf95bb0188ba086704eb8ee680974p@chr17:171147..171161, +
1.16e-23FFCP PHASE1:Hg19::chr17:171147..171161,+#_43abf95bb0188ba086704eb8ee680974p@chr17:171147..171161, +
3.23e-23FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_603669b75d3eeea269eea2c4474d87f0p1@ENST00000418041, p1@ENST00000443104
3.23e-23FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_603669b75d3eeea269eea2c4474d87f0p1@ENST00000418041, p1@ENST00000443104
3.84e-23FFCP PHASE2:Hg19::chr21:46826248..46826282,-#_b8882288022be667bc1bcfee601102ffp@chr21:46826248..46826282, -
3.84e-23FFCP PHASE1:Hg19::chr21:46826248..46826282,-#_b8882288022be667bc1bcfee601102ffp@chr21:46826248..46826282, -
5.07e-23FFCP PHASE2:Mm9::chr19:8742249..8742252,+#_db3fa9430ce3047000b0102f89a4464dp@chr19:8742249..8742252, +
5.07e-23FFCP PHASE1:Mm9::chr19:8742249..8742252,+#_db3fa9430ce3047000b0102f89a4464dp@chr19:8742249..8742252, +
7.12e-23FFCP PHASE2:Hg19::chr19:1826957..1826984,-#_d36859cbd4ff3cba911b9e9ff417c360p@chr19:1826957..1826984, -
7.12e-23FFCP PHASE1:Hg19::chr19:1826957..1826984,-#_d36859cbd4ff3cba911b9e9ff417c360p@chr19:1826957..1826984, -
8.39e-23FFCP PHASE2:Mm9::chr9:44946379..44946388,+#_75047da9c229d2b67491233c8cd93244p20@Scn4b
8.39e-23FFCP PHASE1:Mm9::chr9:44946379..44946388,+#_75047da9c229d2b67491233c8cd93244p20@Scn4b
8.39e-23FFCP PHASE1:Mm9::chr10:74787713..74787724,+#_75047da9c229d2b67491233c8cd93244p@chr10:74787713..74787724, +
8.39e-23FFCP PHASE1:Mm9::chr9:37363230..37363241,+#_75047da9c229d2b67491233c8cd93244p@chr9:37363230..37363241, +
8.39e-23FFCP PHASE2:Mm9::chr10:74787713..74787724,+#_75047da9c229d2b67491233c8cd93244p@chr10:74787713..74787724, +
8.39e-23FFCP PHASE2:Mm9::chr9:37363230..37363241,+#_75047da9c229d2b67491233c8cd93244p@chr9:37363230..37363241, +
9.29e-23FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_2dffbdd08c65899f96ab0ce3cbfd7d59p3@AIF1L
9.29e-23FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_2dffbdd08c65899f96ab0ce3cbfd7d59p3@AIF1L

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001851&oldid=2565090"