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|subset=uberon_slim
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0005418
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=
|part_of=UBERON:0000154;;UBERON:0010709
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Lower limb, which connects the pes with the pelvic girdle.[AAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Lower limb, which connects the pes with the pelvic girdle.[AAO]" xsd:string
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 13:30, 27 June 2012

Name:hindlimb
Definition:"A (free) limb that is connected to a pelvic girdle region. The extent of this structure includes autopod, stylopod and zeugopod regions when present, but excludes the pelvic girdle and its parts." [UBERONREF:0000003, Wikipedia:Lower_limb]
Xrefs:
links:

AAO:0000219
BTO:0002345
EFO:0000883
EHDAA2:0001033
EHDAA:6094
EMAPA:17458
EV:0100015
FMA:24879
GAID:1221
GAID:38
galen:LowerExtremity
[ Gray1239.png Gray1239.png]
[ 200px-Gray1239.png 200px-Gray1239.png]
MA:0000026
MAT:0000395
MESH:A.13.473
MIAA:0000395
ncithesaurus:Hind_Limb
ncithesaurus:Lower_Extremity
SCTID:182281004
VHOG:0000337
VSAO:0000150

XAO:0003031
Synonyms: "free lower limb" EXACT [FMA:24879, UBERONREF:0000003]
"hind limb" EXACT []
"hindlimb" EXACT []
"inferior member" EXACT []
"lower extremity" RELATED []
"lower limb" EXACT []
"membrum inferius" EXACT [FMA:7184, FMA:TA]
"membrum inferius" RELATED LATIN [Wikipedia:Lower_limb]
"pelvic appendage" RELATED []
Comments:AO notes: note that this corresponds to FMA:'free lower limb' (a limb segment), NOT 'lower limb'. Both MA and FMA consider shoulder (and shoulder bones) part of upper limb. Note that AAO class probably refers to skeleton
Alt_id: UBERON:FMA_7184-MA_0000026-MIAA_0000395-XAO_0003031
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002101(limb),UBERON:0004709(pelvic appendage)
develops_from:UBERON:0005418(hindlimb bud)
part_of:UBERON:0000154(posterior region of body),UBERON:0010709(pelvic complex)



Children

part of:UBERON:0000376 (hindlimb stylopod),UBERON:0000978 (leg),UBERON:0001377 (quadriceps femoris),UBERON:0001441 (hindlimb skeleton),UBERON:0002387 (foot),UBERON:0003464 (hindlimb bone),UBERON:0003532 (hindlimb skin),UBERON:0003589 (hindlimb connective tissue),UBERON:0003608 (hindlimb long bone),UBERON:0003663 (hindlimb muscle),UBERON:0003823 (hindlimb zeugopod),UBERON:0003840 (hindlimb joint),UBERON:0003860 (hindlimb mesenchyme),UBERON:0004482 (musculature of lower limb),UBERON:0008784 (lower limb segment),UBERON:0010885 (hindlimb cartilage element),UBERON:0010886 (hindlimb bone pre-cartilage condensation),UBERON:0015022 (hindlimb endochondral element)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002103 (hindlimb), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_fb8b33c4f8432875a0a880c5f8ff2a15p@chr4:186423235..186423240, -
5.42e-195FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_fb8b33c4f8432875a0a880c5f8ff2a15p@chr2:179396370..179396375, -
5.42e-195FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_fb8b33c4f8432875a0a880c5f8ff2a15p@chr2:76859417..76859418, +
5.42e-195FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_fb8b33c4f8432875a0a880c5f8ff2a15p@chr22:25535147..25535150, +
5.42e-195FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_fb8b33c4f8432875a0a880c5f8ff2a15p@chr7:128483294..128483304, +
5.42e-195FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_fb8b33c4f8432875a0a880c5f8ff2a15p@chr4:85166508..85166512, +
5.42e-195FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_fb8b33c4f8432875a0a880c5f8ff2a15p@chr10:97176812..97176813, +
5.42e-195FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_fb8b33c4f8432875a0a880c5f8ff2a15p@chr2:179396370..179396375, -
5.42e-195FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_fb8b33c4f8432875a0a880c5f8ff2a15p@chr11:3691037..3691040, +
5.42e-195FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_fb8b33c4f8432875a0a880c5f8ff2a15p@chr2:76859417..76859418, +
5.42e-195FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_fb8b33c4f8432875a0a880c5f8ff2a15p@chr7:128483294..128483304, +
5.42e-195FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_fb8b33c4f8432875a0a880c5f8ff2a15p@chr10:97176812..97176813, +
5.42e-195FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_fb8b33c4f8432875a0a880c5f8ff2a15p@chr4:85166508..85166512, +
5.42e-195FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_fb8b33c4f8432875a0a880c5f8ff2a15p@chr11:3691037..3691040, +
5.42e-195FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_fb8b33c4f8432875a0a880c5f8ff2a15p@chr10:79759687..79759690, +
5.42e-195FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_fb8b33c4f8432875a0a880c5f8ff2a15p@chr4:186423235..186423240, -
5.42e-195FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_fb8b33c4f8432875a0a880c5f8ff2a15p@chr22:25535147..25535150, +
5.42e-195FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_fb8b33c4f8432875a0a880c5f8ff2a15p@chr10:79759687..79759690, +
9.37e-99FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr1:119487319..119487331, -
9.37e-99FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr13:114067922..114067931, -
9.37e-99FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr5:117747577..117747580, +
9.37e-99FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_35a9ab3cde91cfbad26108dbe4e5e80bp93@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_35a9ab3cde91cfbad26108dbe4e5e80bp77@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr5:137206180..137206187, +
9.37e-99FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr22:36000901..36000903, -
9.37e-99FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr5:175125123..175125125, +
9.37e-99FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr8:144542829..144542857, -
9.37e-99FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr2:152534468..152534476, -
9.37e-99FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_35a9ab3cde91cfbad26108dbe4e5e80bp46@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr3:188070178..188070183, +
9.37e-99FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr1:119487319..119487331, -
9.37e-99FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr2:179399371..179399376, -
9.37e-99FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr5:172318159..172318160, +
9.37e-99FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr15:51060095..51060101, +
9.37e-99FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr2:152525581..152525588, -
9.37e-99FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr15:51060095..51060101, +
9.37e-99FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_35a9ab3cde91cfbad26108dbe4e5e80bp77@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_35a9ab3cde91cfbad26108dbe4e5e80bp54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr8:144542829..144542857, -
9.37e-99FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr5:117747577..117747580, +
9.37e-99FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr1:145478051..145478060, -
9.37e-99FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_35a9ab3cde91cfbad26108dbe4e5e80bp93@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr13:51335579..51335582, +
9.37e-99FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr13:51335579..51335582, +
9.37e-99FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_35a9ab3cde91cfbad26108dbe4e5e80bp104@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr2:179399371..179399376, -
9.37e-99FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr2:179514306..179514308, -
9.37e-99FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_35a9ab3cde91cfbad26108dbe4e5e80bp7@FLJ36848
9.37e-99FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr5:175125123..175125125, +
9.37e-99FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr6:33716557..33716600, -
9.37e-99FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr2:152553958..152553964, -
9.37e-99FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr2:152499727..152499734, -
9.37e-99FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr22:36000901..36000903, -
9.37e-99FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_35a9ab3cde91cfbad26108dbe4e5e80bp108@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_35a9ab3cde91cfbad26108dbe4e5e80bp1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_35a9ab3cde91cfbad26108dbe4e5e80bp46@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr2:152520248..152520253, -
9.37e-99FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr5:172318159..172318160, +
9.37e-99FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr2:152525581..152525588, -
9.37e-99FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr6:33716557..33716600, -
9.37e-99FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr5:137206180..137206187, +
9.37e-99FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_35a9ab3cde91cfbad26108dbe4e5e80bp54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr1:145478051..145478060, -
9.37e-99FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_35a9ab3cde91cfbad26108dbe4e5e80bp104@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr2:152534468..152534476, -
9.37e-99FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr2:179514306..179514308, -
9.37e-99FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_35a9ab3cde91cfbad26108dbe4e5e80bp7@FLJ36848
9.37e-99FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr2:152553958..152553964, -
9.37e-99FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr2:152499727..152499734, -
9.37e-99FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_35a9ab3cde91cfbad26108dbe4e5e80bp108@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_35a9ab3cde91cfbad26108dbe4e5e80bp1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr2:152520248..152520253, -
9.37e-99FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr3:188070178..188070183, +
9.37e-99FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_35a9ab3cde91cfbad26108dbe4e5e80bp@chr13:114067922..114067931, -
2.55e-98FFCP PHASE1:Hg19::chr5:95180155..95180172,+#_a73d950e1c28a6057dc81039c2fc4879p@chr5:95180155..95180172, +
2.55e-98FFCP PHASE1:Hg19::chr10:97037060..97037066,-#_a73d950e1c28a6057dc81039c2fc4879p@chr10:97037060..97037066, -
2.55e-98FFCP PHASE2:Hg19::chr12:122884464..122884467,-#_a73d950e1c28a6057dc81039c2fc4879p38@CLIP1
2.55e-98FFCP PHASE2:Hg19::chr6:125535391..125535409,+#_a73d950e1c28a6057dc81039c2fc4879p@chr6:125535391..125535409, +
2.55e-98FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_a73d950e1c28a6057dc81039c2fc4879p@chr3:46924232..46924241, +
2.55e-98FFCP PHASE2:Hg19::chr2:168102459..168102468,+#_a73d950e1c28a6057dc81039c2fc4879p73@XIRP2
2.55e-98FFCP PHASE1:Hg19::chr21:47769234..47769239,+#_a73d950e1c28a6057dc81039c2fc4879p@chr21:47769234..47769239, +
2.55e-98FFCP PHASE1:Hg19::chr10:29918007..29918031,-#_a73d950e1c28a6057dc81039c2fc4879p@chr10:29918007..29918031, -
2.55e-98FFCP PHASE2:Hg19::chr18:8608021..8608050,+#_a73d950e1c28a6057dc81039c2fc4879p@chr18:8608021..8608050, +
2.55e-98FFCP PHASE2:Hg19::chr2:152566311..152566321,-#_a73d950e1c28a6057dc81039c2fc4879p@chr2:152566311..152566321, -
2.55e-98FFCP PHASE1:Hg19::chr2:152590465..152590472,-#_a73d950e1c28a6057dc81039c2fc4879p@chr2:152590465..152590472, -
2.55e-98FFCP PHASE2:Hg19::chr12:102079632..102079647,-#_a73d950e1c28a6057dc81039c2fc4879p@chr12:102079632..102079647, -
2.55e-98FFCP PHASE2:Hg19::chr22:26299595..26299605,+#_a73d950e1c28a6057dc81039c2fc4879p@chr22:26299595..26299605, +
2.55e-98FFCP PHASE2:Hg19::chr5:95180155..95180172,+#_a73d950e1c28a6057dc81039c2fc4879p@chr5:95180155..95180172, +
2.55e-98FFCP PHASE1:Hg19::chr3:69168368..69168389,-#_a73d950e1c28a6057dc81039c2fc4879p@chr3:69168368..69168389, -
2.55e-98FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_a73d950e1c28a6057dc81039c2fc4879p@chr2:179656442..179656451, -
2.55e-98FFCP PHASE1:Hg19::chr12:122884464..122884467,-#_a73d950e1c28a6057dc81039c2fc4879p38@CLIP1
2.55e-98FFCP PHASE2:Hg19::chr2:152590465..152590472,-#_a73d950e1c28a6057dc81039c2fc4879p@chr2:152590465..152590472, -
2.55e-98FFCP PHASE2:Hg19::chr21:47769234..47769239,+#_a73d950e1c28a6057dc81039c2fc4879p@chr21:47769234..47769239, +
2.55e-98FFCP PHASE1:Hg19::chr12:69653866..69653876,+#_a73d950e1c28a6057dc81039c2fc4879p@chr12:69653866..69653876, +
2.55e-98FFCP PHASE1:Hg19::chr3:35732964..35732965,+#_a73d950e1c28a6057dc81039c2fc4879p@chr3:35732964..35732965, +
2.55e-98FFCP PHASE1:Hg19::chr2:29398214..29398229,+#_a73d950e1c28a6057dc81039c2fc4879p27@CLIP4
2.55e-98FFCP PHASE2:Hg19::chr2:179656442..179656451,-#_a73d950e1c28a6057dc81039c2fc4879p@chr2:179656442..179656451, -
2.55e-98FFCP PHASE1:Hg19::chr12:102079632..102079647,-#_a73d950e1c28a6057dc81039c2fc4879p@chr12:102079632..102079647, -
2.55e-98FFCP PHASE1:Hg19::chr18:8608021..8608050,+#_a73d950e1c28a6057dc81039c2fc4879p@chr18:8608021..8608050, +
2.55e-98FFCP PHASE1:Hg19::chr6:125535391..125535409,+#_a73d950e1c28a6057dc81039c2fc4879p@chr6:125535391..125535409, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Lower limb, which connects the pes with the pelvic girdle.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002103&oldid=1837543"