Personal tools

UBERON:0001174: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0001174
|alt_id=UBERON:FMA_14667-MA_0001631
|name=common bile duct
|namespace=
|def="a tube-like anatomic structure in the human gastrointestinal tract. It is formed by the union of the common hepatic duct and the cystic duct (from the gall bladder). It is later joined by the pancreatic duct to form the ampulla of Vater. There, the two ducts are surrounded by the muscular sphincter of Oddi." [Wikipedia:Common_bile_duct]
|xref=EHDAA2:0000303;;EHDAA:3981;;EMAPA:17201;;FMA:14667;;GAID:282;;galen:CommonBileDuct;;http://upload.wikimedia.org/wikipedia/commons/5/5d/Digestive_system_showing_bile_duct.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png;;MA:0001631;;MESH:A.03.159.183.079.300;;ncithesaurus:Common_Bile_Duct;;SCTID:362199009;;TAO:0005165;;VHOG:0000214;;ZFA:0005165
|is_a=UBERON:0003703
|synonym="ductus choledochus" RELATED LATIN [Wikipedia:Common_bile_duct];;"ductus choledochus (biliaris)" EXACT []
|comment=
|comment=
|alt_id=UBERON:FMA_14667-MA_0001631
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="a tube-like anatomic structure in the human gastrointestinal tract. It is formed by the union of the common hepatic duct and the cystic duct (from the gall bladder). It is later joined by the pancreatic duct to form the ampulla of Vater. There, the two ducts are surrounded by the muscular sphincter of Oddi." [Wikipedia:Common_bile_duct]
|subset=uberon_slim;;vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001174
|is_a=UBERON:0003703
|is_obsolete=
|located_in=
|located_in=
|name=common bile duct
|namespace=
|obo_creation_date=
|part_of=UBERON:0001173
|part_of=UBERON:0001173
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Digestive system duct that collects bile from the hepatic bile duct and the cystic duct.[TAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Digestive system duct that collects bile from the hepatic bile duct and the cystic duct.[TAO]" xsd:string
|is_obsolete=
|subset=uberon_slim;;vertebrate_core
|preceded_by=
|synonym="ductus choledochus" RELATED LATIN [Wikipedia:Common_bile_duct];;"ductus choledochus (biliaris)" EXACT []
|union_of=
|xref=EHDAA2:0000303;;EHDAA:3981;;EMAPA:17201;;FMA:14667;;GAID:282;;galen:CommonBileDuct;;http://upload.wikimedia.org/wikipedia/commons/5/5d/Digestive_system_showing_bile_duct.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png;;MA:0001631;;MESH:A.03.159.183.079.300;;ncithesaurus:Common_Bile_Duct;;SCTID:362199009;;TAO:0005165;;VHOG:0000214;;ZFA:0005165
}}
}}

Revision as of 11:01, 12 September 2014

Name:common bile duct
Definition:"a tube-like anatomic structure in the human gastrointestinal tract. It is formed by the union of the common hepatic duct and the cystic duct (from the gall bladder). It is later joined by the pancreatic duct to form the ampulla of Vater. There, the two ducts are surrounded by the muscular sphincter of Oddi." [Wikipedia:Common_bile_duct]
Xrefs:
links:

EHDAA2:0000303
EHDAA:3981
EMAPA:17201
FMA:14667
GAID:282
galen:CommonBileDuct
[ Digestive_system_showing_bile_duct.png Digestive_system_showing_bile_duct.png]
[ 200px-Digestive_system_showing_bile_duct.png 200px-Digestive_system_showing_bile_duct.png]
MA:0001631
MESH:A.03.159.183.079.300
ncithesaurus:Common_Bile_Duct
SCTID:362199009
TAO:0005165
VHOG:0000214

ZFA:0005165
Synonyms: "ductus choledochus" RELATED LATIN [Wikipedia:Common_bile_duct]
"ductus choledochus (biliaris)" EXACT []
Alt_id: UBERON:FMA_14667-MA_0001631
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003703(extrahepatic bile duct)
part_of:UBERON:0001173(biliary tree)



Children

part of:UBERON:0004913 (hepatopancreatic ampulla)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001174 (common bile duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr19:15923954..15923958,-#_876ac0d9d4a26dfd1831a5db7da3386cp@chr19:15923954..15923958, -
5.42e-195FFCP PHASE2:Hg19::chr7:99779265..99779276,+#_876ac0d9d4a26dfd1831a5db7da3386cp15@STAG3
5.42e-195FFCP PHASE1:Hg19::chr19:49545691..49545692,+#_876ac0d9d4a26dfd1831a5db7da3386cp@chr19:49545691..49545692, +
5.42e-195FFCP PHASE2:Hg19::chr19:49545691..49545692,+#_876ac0d9d4a26dfd1831a5db7da3386cp@chr19:49545691..49545692, +
5.42e-195FFCP PHASE2:Hg19::chr15:20093569..20093572,+#_876ac0d9d4a26dfd1831a5db7da3386cp@chr15:20093569..20093572, +
5.42e-195FFCP PHASE1:Hg19::chr7:98807901..98807908,-#_876ac0d9d4a26dfd1831a5db7da3386cp@chr7:98807901..98807908, -
5.42e-195FFCP PHASE1:Hg19::chr15:20093569..20093572,+#_876ac0d9d4a26dfd1831a5db7da3386cp@chr15:20093569..20093572, +
5.42e-195FFCP PHASE2:Hg19::chr7:98807901..98807908,-#_876ac0d9d4a26dfd1831a5db7da3386cp@chr7:98807901..98807908, -
5.42e-195FFCP PHASE1:Hg19::chr7:98796685..98796688,-#_876ac0d9d4a26dfd1831a5db7da3386cp@chr7:98796685..98796688, -
5.42e-195FFCP PHASE1:Hg19::chr19:15923954..15923958,-#_876ac0d9d4a26dfd1831a5db7da3386cp@chr19:15923954..15923958, -
5.42e-195FFCP PHASE2:Hg19::chr7:98796685..98796688,-#_876ac0d9d4a26dfd1831a5db7da3386cp@chr7:98796685..98796688, -
5.42e-195FFCP PHASE1:Hg19::chr7:99779265..99779276,+#_876ac0d9d4a26dfd1831a5db7da3386cp15@STAG3
9.37e-99FFCP PHASE2:Hg19::chr3:139035972..139036016,-#_27802b06543d4e4f95ecfb0d4c28c4fap@chr3:139035972..139036016, -
9.37e-99FFCP PHASE1:Hg19::chr19:49545646..49545652,+#_27802b06543d4e4f95ecfb0d4c28c4fap@chr19:49545646..49545652, +
9.37e-99FFCP PHASE1:Hg19::chr3:139035972..139036016,-#_27802b06543d4e4f95ecfb0d4c28c4fap@chr3:139035972..139036016, -
9.37e-99FFCP PHASE2:Hg19::chr19:49545646..49545652,+#_27802b06543d4e4f95ecfb0d4c28c4fap@chr19:49545646..49545652, +
9.37e-99FFCP PHASE1:Hg19::chr7:98595103..98595105,-#_27802b06543d4e4f95ecfb0d4c28c4fap@chr7:98595103..98595105, -
9.37e-99FFCP PHASE2:Hg19::chr7:98595103..98595105,-#_27802b06543d4e4f95ecfb0d4c28c4fap@chr7:98595103..98595105, -
2.55e-98FFCP PHASE2:Hg19::chr7:98870790..98870795,+#_a1bde0b0bdc47767bf81458eedaa8ed4p7@MYH16
2.55e-98FFCP PHASE1:Hg19::chr13:23368290..23368299,+#_a1bde0b0bdc47767bf81458eedaa8ed4p@chr13:23368290..23368299, +
2.55e-98FFCP PHASE2:Hg19::chr7:150037547..150037552,-#_a1bde0b0bdc47767bf81458eedaa8ed4p10@RARRES2
2.55e-98FFCP PHASE1:Hg19::chr22:30653778..30653783,-#_a1bde0b0bdc47767bf81458eedaa8ed4p@chr22:30653778..30653783, -
2.55e-98FFCP PHASE1:Hg19::chr7:150037547..150037552,-#_a1bde0b0bdc47767bf81458eedaa8ed4p10@RARRES2
2.55e-98FFCP PHASE1:Hg19::chr20:61339609..61339610,+#_a1bde0b0bdc47767bf81458eedaa8ed4p@chr20:61339609..61339610, +
2.55e-98FFCP PHASE1:Hg19::chr11:69867159..69867175,-#_a1bde0b0bdc47767bf81458eedaa8ed4p3@ENST00000528507
2.55e-98FFCP PHASE2:Hg19::chr13:23368290..23368299,+#_a1bde0b0bdc47767bf81458eedaa8ed4p@chr13:23368290..23368299, +
2.55e-98FFCP PHASE2:Hg19::chr22:30653778..30653783,-#_a1bde0b0bdc47767bf81458eedaa8ed4p@chr22:30653778..30653783, -
2.55e-98FFCP PHASE1:Hg19::chr7:98870980..98870981,+#_a1bde0b0bdc47767bf81458eedaa8ed4p8@MYH16
2.55e-98FFCP PHASE2:Hg19::chr20:61339609..61339610,+#_a1bde0b0bdc47767bf81458eedaa8ed4p@chr20:61339609..61339610, +
2.55e-98FFCP PHASE2:Hg19::chr7:98870980..98870981,+#_a1bde0b0bdc47767bf81458eedaa8ed4p8@MYH16
2.55e-98FFCP PHASE2:Hg19::chr2:40184895..40184905,-#_a1bde0b0bdc47767bf81458eedaa8ed4p@chr2:40184895..40184905, -
2.55e-98FFCP PHASE1:Hg19::chr2:40184895..40184905,-#_a1bde0b0bdc47767bf81458eedaa8ed4p@chr2:40184895..40184905, -
2.55e-98FFCP PHASE2:Hg19::chr11:69867159..69867175,-#_a1bde0b0bdc47767bf81458eedaa8ed4p3@ENST00000528507
2.55e-98FFCP PHASE1:Hg19::chr7:98870790..98870795,+#_a1bde0b0bdc47767bf81458eedaa8ed4p7@MYH16
1.23e-66FFCP PHASE1:Hg19::chr13:107026326..107026335,-#_ebff0e26e07a5a2a23b3fb9bfaba8833p@chr13:107026326..107026335, -
1.23e-66FFCP PHASE2:Hg19::chr19:49545674..49545685,+#_ebff0e26e07a5a2a23b3fb9bfaba8833p@chr19:49545674..49545685, +
1.23e-66FFCP PHASE1:Hg19::chr4:143369478..143369483,-#_ebff0e26e07a5a2a23b3fb9bfaba8833p@chr4:143369478..143369483, -
1.23e-66FFCP PHASE2:Hg19::chr4:143369478..143369483,-#_ebff0e26e07a5a2a23b3fb9bfaba8833p@chr4:143369478..143369483, -
1.23e-66FFCP PHASE2:Hg19::chr13:107026326..107026335,-#_ebff0e26e07a5a2a23b3fb9bfaba8833p@chr13:107026326..107026335, -
1.23e-66FFCP PHASE1:Hg19::chr19:51462404..51462413,-#_ebff0e26e07a5a2a23b3fb9bfaba8833p@chr19:51462404..51462413, -
1.23e-66FFCP PHASE2:Hg19::chr19:51462404..51462413,-#_ebff0e26e07a5a2a23b3fb9bfaba8833p@chr19:51462404..51462413, -
1.23e-66FFCP PHASE2:Hg19::chr6:1054763..1054800,-#_ebff0e26e07a5a2a23b3fb9bfaba8833p@chr6:1054763..1054800, -
1.23e-66FFCP PHASE1:Hg19::chr6:1054763..1054800,-#_ebff0e26e07a5a2a23b3fb9bfaba8833p@chr6:1054763..1054800, -
1.23e-66FFCP PHASE1:Hg19::chr19:49545674..49545685,+#_ebff0e26e07a5a2a23b3fb9bfaba8833p@chr19:49545674..49545685, +
2.39e-66FFCP PHASE1:Hg19::chr7:98870435..98870449,+#_1ef99cfbd3fcaf670d064ab712531f35p6@MYH16
2.39e-66FFCP PHASE2:Hg19::chr7:98870435..98870449,+#_1ef99cfbd3fcaf670d064ab712531f35p6@MYH16
2.39e-66FFCP PHASE1:Hg19::chr3:170626681..170626687,+#_1ef99cfbd3fcaf670d064ab712531f35p@chr3:170626681..170626687, +
2.39e-66FFCP PHASE2:Hg19::chr3:170626681..170626687,+#_1ef99cfbd3fcaf670d064ab712531f35p@chr3:170626681..170626687, +
4.66e-66FFCP PHASE1:Hg19::chr20:56234717..56234758,-#_501a6108f7673599a550c18463696218p@chr20:56234717..56234758, -
4.66e-66FFCP PHASE1:Hg19::chr10:114885594..114885600,+#_501a6108f7673599a550c18463696218p@chr10:114885594..114885600, +
4.66e-66FFCP PHASE2:Hg19::chr20:56234717..56234758,-#_501a6108f7673599a550c18463696218p@chr20:56234717..56234758, -
4.66e-66FFCP PHASE2:Hg19::chr10:114885594..114885600,+#_501a6108f7673599a550c18463696218p@chr10:114885594..114885600, +
1.46e-50FFCP PHASE2:Hg19::chr17:70636802..70636818,+#_620c929df3b4f6206f713f792140c9ffp@chr17:70636802..70636818, +
1.46e-50FFCP PHASE1:Hg19::chr7:98740685..98740699,-#_620c929df3b4f6206f713f792140c9ffp@chr7:98740685..98740699, -
1.46e-50FFCP PHASE1:Hg19::chr19:51471381..51471383,-#_620c929df3b4f6206f713f792140c9ffp14@KLK6
1.46e-50FFCP PHASE2:Hg19::chr19:51471381..51471383,-#_620c929df3b4f6206f713f792140c9ffp14@KLK6
1.46e-50FFCP PHASE2:Hg19::chr7:98740685..98740699,-#_620c929df3b4f6206f713f792140c9ffp@chr7:98740685..98740699, -
1.46e-50FFCP PHASE1:Hg19::chr17:70636802..70636818,+#_620c929df3b4f6206f713f792140c9ffp@chr17:70636802..70636818, +
2.42e-50FFCP PHASE1:Hg19::chr7:98870934..98870947,+#_1a645b82fd0b16343b22824b0bd64c37p4@MYH16
2.42e-50FFCP PHASE1:Hg19::chr10:5652876..5652885,-#_1a645b82fd0b16343b22824b0bd64c37p5@ENST00000425246
2.42e-50FFCP PHASE2:Hg19::chr7:98870934..98870947,+#_1a645b82fd0b16343b22824b0bd64c37p4@MYH16
2.42e-50FFCP PHASE1:Hg19::chr22:43343242..43343291,-#_1a645b82fd0b16343b22824b0bd64c37p20@PACSIN2
2.42e-50FFCP PHASE2:Hg19::chr10:5652876..5652885,-#_1a645b82fd0b16343b22824b0bd64c37p5@ENST00000425246
2.42e-50FFCP PHASE1:Hg19::chr7:98870948..98870967,+#_1a645b82fd0b16343b22824b0bd64c37p3@MYH16
2.42e-50FFCP PHASE2:Hg19::chr22:43343242..43343291,-#_1a645b82fd0b16343b22824b0bd64c37p20@PACSIN2
2.42e-50FFCP PHASE2:Hg19::chr7:98870948..98870967,+#_1a645b82fd0b16343b22824b0bd64c37p3@MYH16
2.42e-50FFCP PHASE1:Hg19::chr10:5501962..5501964,+#_1a645b82fd0b16343b22824b0bd64c37p@chr10:5501962..5501964, +
2.42e-50FFCP PHASE2:Hg19::chr6:128815342..128815347,-#_1a645b82fd0b16343b22824b0bd64c37p@chr6:128815342..128815347, -
2.42e-50FFCP PHASE1:Hg19::chr6:128815342..128815347,-#_1a645b82fd0b16343b22824b0bd64c37p@chr6:128815342..128815347, -
2.42e-50FFCP PHASE2:Hg19::chr10:5501962..5501964,+#_1a645b82fd0b16343b22824b0bd64c37p@chr10:5501962..5501964, +
2.42e-50FFCP PHASE2:Hg19::chr15:42186162..42186197,-#_1a645b82fd0b16343b22824b0bd64c37p1@SPTBN5
2.42e-50FFCP PHASE1:Hg19::chr15:42186162..42186197,-#_1a645b82fd0b16343b22824b0bd64c37p1@SPTBN5
6.58e-50FFCP PHASE2:Hg19::chr8:139755835..139755842,-#_1fb2457dd02803509e7323795a7c3a53p@chr8:139755835..139755842, -
6.58e-50FFCP PHASE1:Hg19::chr10:101691084..101691100,-#_1fb2457dd02803509e7323795a7c3a53p8@DNMBP
6.58e-50FFCP PHASE2:Hg19::chr10:101691084..101691100,-#_1fb2457dd02803509e7323795a7c3a53p8@DNMBP
6.58e-50FFCP PHASE1:Hg19::chr10:101691118..101691135,-#_1fb2457dd02803509e7323795a7c3a53p6@DNMBP
6.58e-50FFCP PHASE2:Hg19::chr1:46954560..46954569,+#_1fb2457dd02803509e7323795a7c3a53p@chr1:46954560..46954569, +
6.58e-50FFCP PHASE1:Hg19::chr1:46954560..46954569,+#_1fb2457dd02803509e7323795a7c3a53p@chr1:46954560..46954569, +
6.58e-50FFCP PHASE2:Hg19::chr10:101691118..101691135,-#_1fb2457dd02803509e7323795a7c3a53p6@DNMBP
6.58e-50FFCP PHASE2:Hg19::chr19:51523347..51523358,-#_1fb2457dd02803509e7323795a7c3a53p11@KLK10
6.58e-50FFCP PHASE1:Hg19::chr19:51523347..51523358,-#_1fb2457dd02803509e7323795a7c3a53p11@KLK10
6.58e-50FFCP PHASE1:Hg19::chr8:139755835..139755842,-#_1fb2457dd02803509e7323795a7c3a53p@chr8:139755835..139755842, -
6.62e-41FFCP PHASE2:Hg19::chr7:98805698..98805708,-#_98b997273fa80379c83e22ab2bf173cfp@chr7:98805698..98805708, -
6.62e-41FFCP PHASE1:Hg19::chr10:30046722..30046725,-#_98b997273fa80379c83e22ab2bf173cfp@chr10:30046722..30046725, -
6.62e-41FFCP PHASE1:Hg19::chr10:5652892..5652903,-#_98b997273fa80379c83e22ab2bf173cfp2@ENST00000425246
6.62e-41FFCP PHASE2:Hg19::chr2:30440814..30440823,+#_98b997273fa80379c83e22ab2bf173cfp@chr2:30440814..30440823, +
6.62e-41FFCP PHASE1:Hg19::chr2:30440814..30440823,+#_98b997273fa80379c83e22ab2bf173cfp@chr2:30440814..30440823, +
6.62e-41FFCP PHASE2:Hg19::chr10:30046722..30046725,-#_98b997273fa80379c83e22ab2bf173cfp@chr10:30046722..30046725, -
6.62e-41FFCP PHASE2:Hg19::chr10:5652892..5652903,-#_98b997273fa80379c83e22ab2bf173cfp2@ENST00000425246
6.62e-41FFCP PHASE2:Hg19::chr9:132337391..132337396,+#_98b997273fa80379c83e22ab2bf173cfp2@ENST00000443993, p2@uc004bya.1
6.62e-41FFCP PHASE1:Hg19::chr9:132337391..132337396,+#_98b997273fa80379c83e22ab2bf173cfp2@ENST00000443993, p2@uc004bya.1
6.62e-41FFCP PHASE2:Hg19::chr3:139253550..139253585,+#_98b997273fa80379c83e22ab2bf173cfp@chr3:139253550..139253585, +
6.62e-41FFCP PHASE1:Hg19::chr3:98671855..98671858,+#_98b997273fa80379c83e22ab2bf173cfp@chr3:98671855..98671858, +
6.62e-41FFCP PHASE1:Hg19::chr3:139253550..139253585,+#_98b997273fa80379c83e22ab2bf173cfp@chr3:139253550..139253585, +
6.62e-41FFCP PHASE2:Hg19::chr17:47091824..47091833,+#_98b997273fa80379c83e22ab2bf173cfp@chr17:47091824..47091833, +
6.62e-41FFCP PHASE1:Hg19::chr17:47091824..47091833,+#_98b997273fa80379c83e22ab2bf173cfp@chr17:47091824..47091833, +
6.62e-41FFCP PHASE2:Hg19::chr3:98671855..98671858,+#_98b997273fa80379c83e22ab2bf173cfp@chr3:98671855..98671858, +
6.62e-41FFCP PHASE1:Hg19::chr7:98805698..98805708,-#_98b997273fa80379c83e22ab2bf173cfp@chr7:98805698..98805708, -
9.91e-41FFCP PHASE1:Hg19::chr8:143317560..143317581,-#_7e46cfe6f4fd3e8a9d806c89a3617466p@chr8:143317560..143317581, -
9.91e-41FFCP PHASE2:Hg19::chr8:143317560..143317581,-#_7e46cfe6f4fd3e8a9d806c89a3617466p@chr8:143317560..143317581, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "Digestive system duct that collects bile from the hepatic bile duct and the cystic duct.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001174&oldid=3273887"