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MacroAPE 1083:Motif GCTCANGG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;288;0!02;0;288;0;0!03;0;0;0;288!04;0;288;0;0!05;288;0;0;0!06;72;72;72;72!07;0;0;288;0!08;0;0;288;0 |macroape_1083_sample_pvalues=11376...")
 
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21!10788-110H5;0.982024!10792-110H9;0.751216!10765-110E9;0.919118!10829-111D1;0.939775!10830-111D2;0.98599!10831-111D3;0.588856!10832-111D4;0.870519!10833-111D5;0.941449!10764-110E8;0.820452!10770-110F5;0.792853!10399-106A3;0.978093!10400-106A4;0.974201!10405-106A9;0.978991!10834-111D6;0.968644!10835-111D7;0.729152!10836-111D8;0.584863!10837-111D9;0.580252!10699-109G6;0.901895!10802-111A1;0.86874!10796-110I4;0.752386!10010-101C1;0.983794!10810-111A9;0.73009!10421-106C7;0.409948!10708-109H6;0.956228!12235-129G3;0.461073!12236-129G4;0.895209!12237-129G5;0.597931!10167-103B5;0.910861!10151-102I7;0.940191!10428-106D5;0.873575!10795-110I3;0.231443!10805-111A4;0.94965!10052-101G7;0.335647!10189-103D9;0.691739!10589-108D4;0.767124!10425-106D2;0.351606!10427-106D4;0.194168!10702-109G9;0.774299!10432-106D9;0.464183!10496-107C1;0.300953!10718-109I7;0.592736!10011-101C2;0.480479!10053-101G8;0.637738!10686-109F2;0.921912!10084-102B3;0.120008!10012-101C3;0.979648!10085-102B4;0.957305!10482-107A5;0.914915!10419-106C5;0.493672!10080-102A8;0.725301!10760-110E4;0.89182!10709-109H7;0.46188!10710-109H8;0.620782!10703-109H1;0.572787!10719-109I8;0.97037!10642-109A3;0.996349!10177-103C6;0.809709!10164-103B2;0.725383!10173-103C2;0.82686!10166-103B4;0.921938!10083-102B2;0.84765!10188-103D8;0.631892!10552-107I3;0.939994!10553-107I4;0.80045!10013-101C4;0.37057!10536-107G5;0.759133!10618-108G6;0.0167639!10423-106C9;0.697414!10785-110H2;0.93481!12238-129G6;0.675146!12239-129G7;0.57538!12240-129G8;0.777498!10416-106C2;0.606937!10801-110I9;0.582843!10766-110F1;0.646067!10824-111C5;0.829451!10825-111C6;0.687571!10826-111C7;0.700937!10454-106G4;0.720701!10409-106B4;0.706066!10638-108I8;0.708086!10636-108I6;0.49627!10513-107D9;0.292592!10420-106C6;0.244168!10082-102B1;0.699179!10014-101C5;0.376334!10070-101I7;0.576032!10452-106G2;0.545622!10453-106G3;0.0922588!10449-106F8;0.148068!10042-101F6;0.122378!10069-101I6;0.974933!10193-103E4;0.556533!10631-108I1;0.985819!10438-106E6;0.992761!10488-107B2;0.181163!10196-103E7;0.421198!10071-101I8;0.904393!10071-101I8;0.407891!10041-101F5;0.847034!10451-106G1;0.557483!10450-106F9;0.834134!10604-108F1;0.488722!10605-108F2;0.147428!10606-108F3;0.421862!10603-108E9;0.173873!10497-107C2;0.250486!10448-106F7;0.679913!10643-109A4;0.383603!10426-106D3;0.933397!10431-106D8;0.232948!10197-103E8;0.464929!10443-106F2;0.821423!10815-111B5;0.492117!10816-111B6;0.758487!10817-111B7;0.67713!10015-101C6;0.720429!10410-106B5;0.766354!10054-101G9;0.638791!10758-110E2;0.419053!10711-109H9;0.134029!10040-101F4;0.772461!10470-106I2;0.852863!10415-106C1;0.851424!10198-103E9;0.675161!10614-108G2;0.486536!10612-108F9;0.666585!10549-107H9;0.721478!10615-108G3;0.233812!10487-107B1;0.81215!10433-106E1;0.956371!10688-109F4;0.70542!10444-106F3;0.55626!10444-106F3;0.102253!10485-107A8;0.178352!10413-106B8;0.0762727!10175-103C4;0.593854!10161-103A8;0.971886!12131-128D7;0.907867!10624-108H3;0.53838!10712-109I1;0.786499!10205-103F7;0.625866!10206-103F8;0.863406!10207-103F9;0.954042!10050-101G5;0.851839!10051-101G6;0.383681!10016-101C7;0.576503!10046-101G1;0.89435!10778-110G4;0.881975!10633-108I3;0.644765!10818-111B8;0.648044!10819-111B9;0.994059!10820-111C1;0.961744!10484-107A7;0.947997!10808-111A7;0.531492!10169-103B7;0.629371!10153-102I9;0.966076!13425-144D5;0.87254!13433-144E4;0.606469!13437-144E8;0.407345!11904-125F5;0.497797!11905-125F6;0.603222!10039-101F3;0.965393!10791-110H8;0.850264!10017-101C8;0.494246!10045-101F9;0.611669!10509-107D5;0.82414!10839-111E2;0.78297!10692-109F8;0.701288!10079-102A7;0.360865!10078-102A6;0.534393!10721-110A1;0.690128!10569-108B2;0.337626!10570-108B3;0.431389!10571-108B4;0.807721!10647-109A8;0.670395!10752-110D5;0.153267!10782-110G8;0.848489!10726-110A6;0.459787!10018-101C9;0.27344!10086-102B5;0.153533!10182-103D2;0.437535!10165-103B3;0.967118!10499-107C4;0.894979!10408-106B3;0.717032!10019-101D1;0.245174!10068-101I5;0.658457!10075-102A3;0.775433!10077-102A5;0.297848!10727-110A7;0.24975!10775-110G1;0.720553!10412-106B7;0.691719!12231-129F8;0.316354!12232-129F9;0.848566!12233-129G1;0.902505!12234-129G2;0.834092!10414-106B9;0.975637!10170-103B8;0.60955!10183-103D3;0.884282!10150-102I6;0.889517!10174-103C3;0.841499!10155-103A2;0.904824!10038-101F2;0.830004!10838-111E1;0.950592!10759-110E3;0.957731!10514-107E1;0.0545143!10465-106H6;0.395072!10691-109F7;0.174203!10843-111E6;0.186555!10844-111E7;0.802135!11747-123G1;0.993909!11748-123G2;0.45347!11749-123G3;0.28158!11750-123G4;0.310891!11751-123G5;0.484355!11840-124H4;0.356265!11752-123G6;0.459104!11753-123G7;0.472832!11754-123G8;0.485534!11755-123G9;0.62441!11756-123H1;0.86459!11833-124G6;0.846715!11760-123H5;0.23352!11836-124G9;0.657797!11758-123H3;0.640362!11835-124G8;0.818255!11762-123H7;0.610641!11838-124H2;0.701597!11757-123H2;0.95284!11759-123H4;0.937477!11761-123H6;0.192937!11842-124H6;0.919003!11837-124H1;0.123828!10568-108B1;0.711242!13230-141I8;0.900152!13231-141I9;0.724858!10696-109G3;0.529639!10493-107B7;0.792017!10494-107B8;0.272961!10850-111F4;0.0497075!10851-111F5;0.460167!10852-111F6;0.270549!10853-111F7;0.816639!10854-111F8;0.882164!10855-111F9;0.906505!10856-111G1;0.968773!10847-111F1;0.350331!10846-111E9;0.358537!10848-111F2;0.562593!10845-111E8;0.408427!10857-111G2;0.625768!10858-111G3;0.920243!10156-103A3;0.497899!11901-125F2;0.856408!11902-125F3;0.895412!11903-125F4;0.809181!10689-109F5;0.977929!10648-109A9;0.0687906!10784-110H1;0.5654!10744-110C6;0.292107!10772-110F7;0.828166!10474-106I6;0.712149!10600-108E6;0.768904!10684-109E9;0.84736!12226-129F3;0.78991!12227-129F4;0.987764!10508-107D4;0.836362!10539-107G8;0.50554!10607-108F4;0.441798!10555-107I6;0.486405!10774-110F9;0.690984!10637-108I7;0.631432!10663-109C6;0.591663!10728-110A8;0.695428!10729-110A9;0.371085!10430-106D7;0.480904!10730-110B1;0.348815!10813-111B3;0.767719!10812-111B2;0.986463!10037-101F1;0.890177!10172-103C1;0.844097!10163-103B1;0.919267!10076-102A4;0.867723!10073-102A1;0.988196!10036-101E9;0.887007!10195-103E6;0.947565!10277-104E7;0.910393!10434-106E2;0.679476!10550-107I1;0.100274!10545-107H5;0.279285!10544-107H4;0.499718!10704-109H2;0.430149!10510-107D6;0.872389!10558-107I9;0.0729845!10020-101D2;0.280945!10732-110B3;0.398352!10049-101G4;0.473328!10698-109G5;0.0511372!10437-106E5;0.711774!10417-106C3;0.668516!10035-101E8;0.196922!10171-103B9;0.864076!10157-103A4;0.835478!10034-101E7;0.849402!10072-101I9;0.827018!10199-103F1;0.70839!10200-103F2;0.091756!10697-109G4;0.63416!10723-110A3;0.885396!10179-103C8;0.0315502!10160-103A7;0.91454!10180-103C9;0.720072!10162-103A9;0.894234!10021-101D3;0.736526!10840-111E3;0.830079!10706-109H4;0.372565!10033-101E6;0.313513!10032-101E5;0.994784!10490-107B4;0.930533!10439-106E7;0.477286!10022-101D4;0.205993!10176-103C5;0.747314!10469-106I1;0.782243!10067-101I4;0.462134!10411-106B6;0.982437!10471-106I3;0.40895!10030-101E3;0.770347!10475-106I7;0.530484!10787-110H4;0.954113!10477-106I9;0.518616!10695-109G2;0.397221!11771-123I7;0.788511!11772-123I8;0.519695!11773-123I9;0.76007!10093-102C3;0.768532!10442-106F1;0.271334!10442-106F1;0.976645!10201-103F3;0.919641!10639-108I9;0.720606!11843-124H7;0.182135!11841-124H5;0.80566!10693-109F9;0.782746!10436-106E4;0.385812!10483-107A6;0.70594!10282-104F3;0.878125!10023-101D5;0.568649!10066-101I3;0.434939!10065-101I2;0.67444!10800-110I8;0.561315!10610-108F7;0.619512!10841-111E4;0.583093!10541-107H1;0.597211!10842-111E5;0.485772!10562-108A4;0.984927!10024-101D6;0.510945!10064-101I1;0.297094!10609-108F6;0.576616!10048-101G3;0.838643!10781-110G7;0.626934!10181-103D1;0.575976!10159-103A6;0.919684!10056-101H2;0.83823!10737-110B8;0.902475!10025-101D7;0.586716!10044-101F8;0.579841!10424-106D1;0.903745!10463-106H4;0.704093!10616-108G4;0.364827!10486-107A9;0.436712!10062-101H8;0.581853!10202-103F4;0.912243!10158-103A5;0.300894!10441-106E9;0.859219!10031-101E4;0.201842!10063-101H9;0.952208!10063-101H9;0.702204!11763-123H8;0.496709!11765-123I1;0.627876!11768-123I4;0.678151!10807-111A6;0.434508!10790-110H7;0.40874!10798-110I6;0.503887!10786-110H3;0.927193!10591-108D6;0.848625!10593-108D8;0.984375!10590-108D5;0.650385!10026-101D8;0.762626!10096-102C6;0.192386!10168-103B6;0.259716!10154-103A1;0.847237!10209-103G2;0.91444!10061-101H7;0.434727!10027-101D9;0.876381!10043-101F7;0.375184!10783-110G9;0.313744!10028-101E1;0.833149!10060-101H6;0.570747!10203-103F5;0.938002!10059-101H5;0.501298!10047-101G2;0.785951!10029-101E2;0.572639!10058-101H4;0.430826!10418-106C4;0.670878!10492-107B6;0.365848!10694-109G1;0.831818!10797-110I5;0.132057!10057-101H3;0.791216!10100-102D1;0.608047!10055-101H1;0.937395!10204-103F6;0.921626!10191-103E2;0.984098!10563-108A5;0.61762
|name=motif_GCTCANGG
|name=motif_GCTCANGG
|tomtom_result=Esrrb#MA0141.1;1;0.00229529;1.09256;0.711783;8;GCTCAAGG;AGCTCAAGGTCA;+!Mafb#MA0117.1;0;0.00266593;1.26898;0.711783;8;GCTCAAGG;GCTGACGG;+!usp#MA0016.1;2;0.0032021;1.5242;0.711783;8;GCTCAAGG;GGGGTCACGG;+!PLAG1#MA0163.1;3;0.00359427;1.71087;0.711783;8;GCTCAAGG;GGGGCCCAAGGGGG;+!TFAP2A#MA0003.1;0;0.0037393;1.77991;0.711783;8;GCTCAAGG;CCCCCGGGC;-!ESR2#MA0258.1;3;0.00710309;3.38107;0.775585;8;GCTCAAGG;CAAGGTCACGGTGACCTG;+!ESR1#MA0112.2;2;0.00739245;3.51881;0.775585;8;GCTCAAGG;GGGGTCACGGTGACCTGG;-!ESR1#MA0112.2;1;0.00741405;3.52909;0.775585;8;GCTCAAGG;AGGTCAGGGTGACCTGGGCC;-!RXR::RAR_DR5#MA0159.1;1;0.00761694;3.62566;0.775585;8;GCTCAAGG;AGGTCATGGAGAGGTCA;+!REI1#MA0364.1;-2;0.00814897;3.87891;0.775585;6;GCTCAAGG;TCAGGGG;-!PPARG#MA0066.1;3;0.0114832;5.466;0.96983;8;GCTCAAGG;GTAGGTCACGGTGACCTACT;+!EBF1#MA0154.1;0;0.0124599;5.93093;0.96983;8;GCTCAAGG;ACCCAAGGGA;+!IXR1#MA0323.1;4;0.0132468;6.30549;0.96983;8;GCTCAAGG;CCCCGCTTCCGGCTT;-!MAC1#MA0326.1;3;0.0175237;8.3413;0.999747;5;GCTCAAGG;TTTGCTCA;+!RXRA::VDR#MA0074.1;1;0.0179413;8.54005;0.999747;8;GCTCAAGG;GGGTCAACGAGTTCA;+!Pax2#MA0067.1;0;0.0181157;8.62308;0.999747;8;GCTCAAGG;AGTCACGG;+
}}
}}

Latest revision as of 12:47, 7 September 2012

Full Name: motif_GCTCANGG

Motif matrix
POACGT
01002880
02028800
03000288
04028800
05288000
0672727272
07002880
08002880

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Esrrb#MA0141.110.002295291.092560.7117838GCTCAAGGAGCTCAAGGTCA+
Mafb#MA0117.100.002665931.268980.7117838GCTCAAGGGCTGACGG+
usp#MA0016.120.00320211.52420.7117838GCTCAAGGGGGGTCACGG+
PLAG1#MA0163.130.003594271.710870.7117838GCTCAAGGGGGGCCCAAGGGGG+
TFAP2A#MA0003.100.00373931.779910.7117838GCTCAAGGCCCCCGGGC-
ESR2#MA0258.130.007103093.381070.7755858GCTCAAGGCAAGGTCACGGTGACCTG+
ESR1#MA0112.220.007392453.518810.7755858GCTCAAGGGGGGTCACGGTGACCTGG-
ESR1#MA0112.210.007414053.529090.7755858GCTCAAGGAGGTCAGGGTGACCTGGGCC-
RXR::RAR_DR5#MA0159.110.007616943.625660.7755858GCTCAAGGAGGTCATGGAGAGGTCA+
REI1#MA0364.1-20.008148973.878910.7755856GCTCAAGGTCAGGGG-
PPARG#MA0066.130.01148325.4660.969838GCTCAAGGGTAGGTCACGGTGACCTACT+
EBF1#MA0154.100.01245995.930930.969838GCTCAAGGACCCAAGGGA+
IXR1#MA0323.140.01324686.305490.969838GCTCAAGGCCCCGCTTCCGGCTT-
MAC1#MA0326.130.01752378.34130.9997475GCTCAAGGTTTGCTCA+
RXRA::VDR#MA0074.110.01794138.540050.9997478GCTCAAGGGGGTCAACGAGTTCA+
Pax2#MA0067.100.01811578.623080.9997478GCTCAAGGAGTCACGG+
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