MacroAPE 1083:11-CGGGGAAATTAC: Difference between revisions
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(Created page with "{{Macroape_1083
|PWM=PO;A;C;G;T!1;43.036;231.014;65.366;66.584!2;51.968;40.194;260.246;53.592!3;22.33;12.992;341.852;28.826!4;61.712;0.406;308.56;35.322!5;17.458;3.248;375.55...") |
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!12181-129A3;0.0694453!12176-128I7;0.0395348!12177-128I8;0.0877906!12182-129A4;0.0413837!12183-129A5;0.0273212!12184-129A6;0.045659!10809-111A8;0.127825!10597-108E3;0.0822783!10717-109I6;0.494593!10455-106G5;0.662432!10534-107G3;0.124753!10429-106D6;0.685796!10464-106H5;0.306312!10827-111C8;0.199241!10789-110H6;0.252161!10828-111C9;0.131242!10788-110H5;0.0311307!10792-110H9;0.803086!10765-110E9;0.227424!10829-111D1;0.781955!10830-111D2;0.604499!10831-111D3;0.841485!10832-111D4;0.209117!10833-111D5;0.542089!10764-110E8;0.636054!10770-110F5;0.401999!10399-106A3;0.46109!10400-106A4;0.989157!10405-106A9;0.902118!10834-111D6;0.99452!10835-111D7;0.0997586!10836-111D8;0.389094!10837-111D9;0.9514!10699-109G6;0.461662!10802-111A1;0.892132!10796-110I4;0.453525!10010-101C1;0.33415!10810-111A9;0.795288!10421-106C7;0.122174!10708-109H6;0.118579!12235-129G3;0.348281!12236-129G4;0.921723!12237-129G5;0.0247917!10167-103B5;0.242567!10151-102I7;9.98407e-05!10428-106D5;0.00498883!10795-110I3;0.0975016!10805-111A4;0.938349!10052-101G7;0.00140572!10189-103D9;0.326535!10589-108D4;0.0456744!10425-106D2;0.000896129!10427-106D4;0.000240562!10702-109G9;0.00484907!10432-106D9;0.889584!10496-107C1;0.422403!10718-109I7;0.486256!10011-101C2;0.985533!10053-101G8;0.392829!10686-109F2;0.077004!10084-102B3;0.730816!10012-101C3;5.59234e-05!10085-102B4;0.000181993!10482-107A5;2.75743e-05!10419-106C5;0.00568311!10080-102A8;0.00332289!10760-110E4;0.420978!10709-109H7;0.0978214!10710-109H8;0.0486516!10703-109H1;0.138857!10719-109I8;0.00839062!10642-109A3;0.000257086!10177-103C6;0.014604!10164-103B2;2.02973e-05!10173-103C2;0.00018769!10166-103B4;9.22514e-05!10083-102B2;0.00191457!10188-103D8;0.000107696!10552-107I3;6.76287e-05!10553-107I4;0.0825443!10013-101C4;0.00618673!10536-107G5;0.178938!10618-108G6;0.634745!10423-106C9;0.243976!10785-110H2;0.074017!12238-129G6;0.0720771!12239-129G7;0.0180162!12240-129G8;0.438439!10416-106C2;0.00290266!10801-110I9;0.386288!10766-110F1;0.492174!10824-111C5;0.066877!10825-111C6;0.448788!10826-111C7;0.306442!10454-106G4;0.477738!10409-106B4;0.271441!10638-108I8;0.280928!10636-108I6;0.366885!10513-107D9;0.649266!10420-106C6;0.0462339!10082-102B1;0.00234461!10014-101C5;0.0651007!10070-101I7;0.425772!10452-106G2;0.220776!10453-106G3;0.00783163!10449-106F8;0.0194556!10042-101F6;0.0331207!10069-101I6;0.00014176!10193-103E4;0.196619!10631-108I1;2.23326e-05!10438-106E6;0.343143!10488-107B2;0.079077!10196-103E7;0.924994!10071-101I8;0.00278084!10071-101I8;0.307903!10041-101F5;0.000480016!10451-106G1;0.907183!10450-106F9;0.280173!10604-108F1;0.187449!10605-108F2;0.435175!10606-108F3;0.101706!10603-108E9;0.537914!10497-107C2;0.534287!10448-106F7;0.837844!10643-109A4;0.0919465!10426-106D3;0.518472!10431-106D8;0.856148!10197-103E8;0.610294!10443-106F2;0.14584!10815-111B5;0.744031!10816-111B6;0.143315!10817-111B7;0.217746!10015-101C6;0.117264!10410-106B5;0.195599!10054-101G9;0.202394!10758-110E2;0.0027981!10711-109H9;0.758551!10040-101F4;0.100771!10470-106I2;5.67272e-05!10415-106C1;0.120334!10198-103E9;0.725149!10614-108G2;0.592705!10612-108F9;0.013115!10549-107H9;0.0439063!10615-108G3;0.222703!10487-107B1;0.0903624!10433-106E1;0.802897!10688-109F4;0.672089!10444-106F3;0.00562217!10444-106F3;0.272943!10485-107A8;0.352597!10413-106B8;0.187045!10175-103C4;0.166845!10161-103A8;0.000114424!12131-128D7;0.0101791!10624-108H3;0.185485!10712-109I1;0.0920537!10205-103F7;0.00846529!10206-103F8;0.458609!10207-103F9;0.0466083!10050-101G5;0.119853!10051-101G6;0.0693301!10016-101C7;0.0562742!10046-101G1;0.164411!10778-110G4;0.00710826!10633-108I3;0.435651!10818-111B8;0.0132041!10819-111B9;0.771083!10820-111C1;0.753977!10484-107A7;0.832948!10808-111A7;0.726747!10169-103B7;0.217471!10153-102I9;0.000299562!13425-144D5;0.00205246!13433-144E4;0.00806347!13437-144E8;0.011866!11904-125F5;0.00989152!11905-125F6;0.00708895!10039-101F3;0.00654481!10791-110H8;0.000132917!10017-101C8;0.00402948!10045-101F9;0.396147!10509-107D5;0.182804!10839-111E2;0.890432!10692-109F8;0.215582!10079-102A7;0.986453!10078-102A6;0.160629!10721-110A1;0.252904!10569-108B2;0.000767466!10570-108B3;0.291363!10571-108B4;0.340261!10647-109A8;0.407669!10752-110D5;0.627987!10782-110G8;0.0199235!10726-110A6;0.477834!10018-101C9;0.878661!10086-102B5;0.983972!10182-103D2;0.430426!10165-103B3;0.00113397!10499-107C4;0.00214793!10408-106B3;0.305638!10019-101D1;0.443556!10068-101I5;0.168214!10075-102A3;0.827616!10077-102A5;0.302621!10727-110A7;0.0354622!10775-110G1;0.190637!10412-106B7;0.0176131!12231-129F8;0.140323!12232-129F9;0.166178!12233-129G1;0.0472429!12234-129G2;0.212362!10414-106B9;0.344566!10170-103B8;0.00344619!10183-103D3;0.000124398!10150-102I6;0.000381711!10174-103C3;0.00219629!10155-103A2;0.000226088!10038-101F2;0.0129989!10838-111E1;0.00222602!10759-110E3;0.00372944!10514-107E1;0.0943279!10465-106H6;0.281667!10691-109F7;0.0131751!10843-111E6;0.00160725!10844-111E7;0.00480527!11747-123G1;0.00675508!11748-123G2;0.571254!11749-123G3;0.698962!11750-123G4;0.401064!11751-123G5;0.314695!11840-124H4;0.788987!11752-123G6;0.715192!11753-123G7;0.0495918!11754-123G8;0.539247!11755-123G9;0.204336!11756-123H1;0.0178358!11833-124G6;0.00995948!11760-123H5;3.37474e-05!11836-124G9;0.0352343!11758-123H3;0.198284!11835-124G8;0.352488!11762-123H7;0.136913!11838-124H2;0.450442!11757-123H2;0.256344!11759-123H4;0.111373!11761-123H6;0.0191901!11842-124H6;0.0520063!11837-124H1;0.210311!10568-108B1;0.0469124!13230-141I8;0.297493!13231-141I9;0.748749!10696-109G3;0.717952!10493-107B7;0.984289!10494-107B8;0.700816!10850-111F4;0.334588!10851-111F5;0.928262!10852-111F6;0.926474!10853-111F7;0.494484!10854-111F8;0.0917705!10855-111F9;0.339188!10856-111G1;0.237795!10847-111F1;0.02143!10846-111E9;0.805462!10848-111F2;0.413556!10845-111E8;0.684398!10857-111G2;0.199338!10858-111G3;0.508585!10156-103A3;0.00771808!11901-125F2;0.00172847!11902-125F3;0.329607!11903-125F4;0.103921!10689-109F5;0.132622!10648-109A9;0.936766!10784-110H1;0.411972!10744-110C6;0.704307!10772-110F7;0.0473421!10474-106I6;0.737591!10600-108E6;0.0354184!10684-109E9;0.974521!12226-129F3;0.380898!12227-129F4;0.172798!10508-107D4;0.854939!10539-107G8;0.000400318!10607-108F4;0.00733138!10555-107I6;0.0109918!10774-110F9;0.0417103!10637-108I7;0.00315325!10663-109C6;0.363201!10728-110A8;0.0489805!10729-110A9;0.131701!10430-106D7;0.620226!10730-110B1;0.385178!10813-111B3;0.000490852!10812-111B2;0.310119!10037-101F1;0.683558!10172-103C1;8.27095e-05!10163-103B1;0.000338381!10076-102A4;0.00446631!10073-102A1;2.63796e-05!10036-101E9;0.000353445!10195-103E6;2.28725e-05!10277-104E7;0.000130011!10434-106E2;0.00417646!10550-107I1;0.0261501!10545-107H5;0.0830889!10544-107H4;0.73406!10704-109H2;0.494853!10510-107D6;0.496085!10558-107I9;0.833089!10020-101D2;0.0192768!10732-110B3;0.369972!10049-101G4;0.38011!10698-109G5;0.0039465!10437-106E5;0.0515154!10417-106C3;0.102379!10035-101E8;0.157852!10171-103B9;0.00012957!10157-103A4;0.000170556!10034-101E7;0.00178293!10072-101I9;6.32427e-05!10199-103F1;0.00107661!10200-103F2;0.00651009!10697-109G4;0.272722!10723-110A3;0.733937!10179-103C8;0.592884!10160-103A7;0.0112612!10180-103C9;0.00852517!10162-103A9;0.000120878!10021-101D3;0.00738664!10840-111E3;0.136919!10706-109H4;0.0468344!10033-101E6;0.498519!10032-101E5;0.00164486!10490-107B4;2.97636e-05!10439-106E7;0.164052!10022-101D4;0.501523!10176-103C5;0.182904!10469-106I1;1.70479e-05!10067-101I4;0.350565!10411-106B6;0.0447505!10471-106I3;0.67917!10030-101E3;0.0517462!10475-106I7;0.0162904!10787-110H4;0.00281144!10477-106I9;0.0095674!10695-109G2;0.15786!11771-123I7;0.331886!11772-123I8;0.847606!11773-123I9;0.0468172!10093-102C3;0.277702!10442-106F1;0.0043845!10442-106F1;0.128549!10201-103F3;0.184184!10639-108I9;0.0271829!11843-124H7;0.881228!11841-124H5;0.268751!10693-109F9;0.0836531!10436-106E4;0.173892!10483-107A6;0.339294!10282-104F3;0.279775!10023-101D5;0.0547924!10066-101I3;0.259896!10065-101I2;0.0154387!10800-110I8;0.0499086!10610-108F7;0.0141836!10841-111E4;0.0335309!10541-107H1;0.149272!10842-111E5;0.001321!10562-108A4;0.00864449!10024-101D6;0.00923481!10064-101I1;0.59291!10609-108F6;0.337732!10048-101G3;0.648416!10781-110G7;0.08765!10181-103D1;0.0202815!10159-103A6;0.00350996!10056-101H2;0.0295602!10737-110B8;0.000286975!10025-101D7;0.745901!10044-101F8;0.000460163!10424-106D1;0.00171323!10463-106H4;0.00940879!10616-108G4;0.468103!10486-107A9;0.064482!10062-101H8;0.970226!10202-103F4;0.0777197!10158-103A5;0.0715402!10441-106E9;0.0158916!10031-101E4;0.0997594!10063-101H9;4.73721e-05!10063-101H9;0.000209248!11763-123H8;0.234847!11765-123I1;0.859479!11768-123I4;0.234814!10807-111A6;0.319113!10790-110H7;0.000721255!10798-110I6;0.0328918!10786-110H3;0.22359!10591-108D6;0.0127298!10593-108D8;0.0861059!10590-108D5;0.0241767!10026-101D8;0.0661621!10096-102C6;0.0436445!10168-103B6;7.60492e-06!10154-103A1;4.20335e-05!10209-103G2;0.00461024!10061-101H7;0.188348!10027-101D9;0.000556238!10043-101F7;0.970734!10783-110G9;0.606641!10028-101E1;0.0602361!10060-101H6;0.00268643!10203-103F5;0.00472283!10059-101H5;0.223262!10047-101G2;0.0527115!10029-101E2;0.500456!10058-101H4;0.815614!10418-106C4;0.0269017!10492-107B6;0.647876!10694-109G1;0.598708!10797-110I5;0.389766!10057-101H3;0.472467!10100-102D1;0.0361477!10055-101H1;0.125936!10204-103F6;0.00922139!10191-103E2;0.798858!10563-108A5;0.450768 | ||
|name=11-CGGGGAAATTAC,CNhs11958,BestGuess:NFkB-p65-Rel(RHD)/LPS-exp/Homer(0.731055342133736),T:406.0(7.71%),B:1569.7(3.61%),P:1e-43 | |name=11-CGGGGAAATTAC,CNhs11958,BestGuess:NFkB-p65-Rel(RHD)/LPS-exp/Homer(0.731055342133736),T:406.0(7.71%),B:1569.7(3.61%),P:1e-43 | ||
|tomtom_result=YPR196W#MA0437.1;0;7.26313e-05;0.0345725;0.0685551;9;CGGGGAAATTAC;CGGAGAAAT;-!MZF1_1-4#MA0056.1;0;0.00101242;0.481914;0.466275;6;CGGGGAAATTAC;TGGGGA;+!NF-kappaB#MA0061.1;-2;0.00179962;0.856619;0.466275;10;CGGGGAAATTAC;GGGAATTTCC;+!RELA#MA0107.1;-3;0.001976;0.940575;0.466275;9;CGGGGAAATTAC;GGAAATTCCC;-!YRR1#MA0439.1;-1;0.00358466;1.7063;0.526534;11;CGGGGAAATTAC;GCGGAGATAAG;-!ZMS1#MA0441.1;2;0.00400075;1.90435;0.526534;7;CGGGGAAATTAC;TGCGGGGAA;-!YRM1#MA0438.1;-1;0.00446273;2.12426;0.526534;8;CGGGGAAATTAC;ACGGAAAT;+!sd#MA0243.1;0;0.00664744;3.16418;0.580241;12;CGGGGAAATTAC;CCGAGGAATGTC;-!REL#MA0101.1;-3;0.00676215;3.21879;0.580241;9;CGGGGAAATTAC;GGAAATCCCC;-!Dll#MA0187.1;-4;0.00936918;4.45973;0.609193;7;CGGGGAAATTAC;GTAATTA;-!OAF1#MA0348.1;1;0.00965986;4.59809;0.609193;8;CGGGGAAATTAC;TCGGAGATA;+!FEV#MA0156.1;-1;0.0108374;5.1586;0.609193;8;CGGGGAAATTAC;CAGGAAAT;+!RGT1#MA0367.1;1;0.0109301;5.20274;0.609193;10;CGGGGAAATTAC;CCGGAAAAACT;-!EDS1#MA0294.1;0;0.0109721;5.2227;0.609193;9;CGGGGAAATTAC;CGGAAAAAT;+!ELF5#MA0136.1;-1;0.0129704;6.17393;0.637588;9;CGGGGAAATTAC;AAGGAAGTA;-!NHP10#MA0344.1;2;0.013496;6.42409;0.637588;6;CGGGGAAATTAC;GCCGGGGA;+!YKL222C#MA0428.1;0;0.0140859;6.70487;0.637588;9;CGGGGAAATTAC;AACGGAAAT;+!STAT1#MA0137.2;5;0.0143303;6.82123;0.637588;10;CGGGGAAATTAC;GGTTTCCGGGAAATG;-!NFKB1#MA0105.1;-2;0.015279;7.27279;0.637588;10;CGGGGAAATTAC;GGGGAATCCCC;-!YDR026C#MA0421.1;2;0.0155365;7.39535;0.637588;8;CGGGGAAATTAC;GCCGGGTAAA;-!SPI1#MA0080.2;-2;0.017418;8.29095;0.685018;7;CGGGGAAATTAC;AGGAAGT;+!Prrx2#MA0075.1;-6;0.0182733;8.69808;0.689909;5;CGGGGAAATTAC;AATTA;+!REB1#MA0363.1;0;0.0194225;9.24512;0.691072;9;CGGGGAAATTAC;CCGGGTAAC;-!SPT23#MA0388.1;-4;0.0197684;9.40975;0.691072;8;CGGGGAAATTAC;GAAATCAA;+ | |||
}} | }} |
Latest revision as of 13:51, 7 September 2012
Full Name: 11-CGGGGAAATTAC,CNhs11958,BestGuess:NFkB-p65-Rel(RHD)/LPS-exp/Homer(0.731055342133736),T:406.0(7.71%),B:1569.7(3.61%),P:1e-43
Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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|
Sample specificity
The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon
TomTom analysis
<br>Analyst: Michiel de Hoon and Hiroko Ohmiya
Target_ID | Optimal_offset | p-value | E-value | q-value | Overlap | Query consensus | Target consensus | Orientation |
---|---|---|---|---|---|---|---|---|
YPR196W#MA0437.1 | 0 | 7.26313e-05 | 0.0345725 | 0.0685551 | 9 | CGGGGAAATTAC | CGGAGAAAT | - |
MZF1_1-4#MA0056.1 | 0 | 0.00101242 | 0.481914 | 0.466275 | 6 | CGGGGAAATTAC | TGGGGA | + |
NF-kappaB#MA0061.1 | -2 | 0.00179962 | 0.856619 | 0.466275 | 10 | CGGGGAAATTAC | GGGAATTTCC | + |
RELA#MA0107.1 | -3 | 0.001976 | 0.940575 | 0.466275 | 9 | CGGGGAAATTAC | GGAAATTCCC | - |
YRR1#MA0439.1 | -1 | 0.00358466 | 1.7063 | 0.526534 | 11 | CGGGGAAATTAC | GCGGAGATAAG | - |
ZMS1#MA0441.1 | 2 | 0.00400075 | 1.90435 | 0.526534 | 7 | CGGGGAAATTAC | TGCGGGGAA | - |
YRM1#MA0438.1 | -1 | 0.00446273 | 2.12426 | 0.526534 | 8 | CGGGGAAATTAC | ACGGAAAT | + |
sd#MA0243.1 | 0 | 0.00664744 | 3.16418 | 0.580241 | 12 | CGGGGAAATTAC | CCGAGGAATGTC | - |
REL#MA0101.1 | -3 | 0.00676215 | 3.21879 | 0.580241 | 9 | CGGGGAAATTAC | GGAAATCCCC | - |
Dll#MA0187.1 | -4 | 0.00936918 | 4.45973 | 0.609193 | 7 | CGGGGAAATTAC | GTAATTA | - |
OAF1#MA0348.1 | 1 | 0.00965986 | 4.59809 | 0.609193 | 8 | CGGGGAAATTAC | TCGGAGATA | + |
FEV#MA0156.1 | -1 | 0.0108374 | 5.1586 | 0.609193 | 8 | CGGGGAAATTAC | CAGGAAAT | + |
RGT1#MA0367.1 | 1 | 0.0109301 | 5.20274 | 0.609193 | 10 | CGGGGAAATTAC | CCGGAAAAACT | - |
EDS1#MA0294.1 | 0 | 0.0109721 | 5.2227 | 0.609193 | 9 | CGGGGAAATTAC | CGGAAAAAT | + |
ELF5#MA0136.1 | -1 | 0.0129704 | 6.17393 | 0.637588 | 9 | CGGGGAAATTAC | AAGGAAGTA | - |
NHP10#MA0344.1 | 2 | 0.013496 | 6.42409 | 0.637588 | 6 | CGGGGAAATTAC | GCCGGGGA | + |
YKL222C#MA0428.1 | 0 | 0.0140859 | 6.70487 | 0.637588 | 9 | CGGGGAAATTAC | AACGGAAAT | + |
STAT1#MA0137.2 | 5 | 0.0143303 | 6.82123 | 0.637588 | 10 | CGGGGAAATTAC | GGTTTCCGGGAAATG | - |
NFKB1#MA0105.1 | -2 | 0.015279 | 7.27279 | 0.637588 | 10 | CGGGGAAATTAC | GGGGAATCCCC | - |
YDR026C#MA0421.1 | 2 | 0.0155365 | 7.39535 | 0.637588 | 8 | CGGGGAAATTAC | GCCGGGTAAA | - |
SPI1#MA0080.2 | -2 | 0.017418 | 8.29095 | 0.685018 | 7 | CGGGGAAATTAC | AGGAAGT | + |
Prrx2#MA0075.1 | -6 | 0.0182733 | 8.69808 | 0.689909 | 5 | CGGGGAAATTAC | AATTA | + |
REB1#MA0363.1 | 0 | 0.0194225 | 9.24512 | 0.691072 | 9 | CGGGGAAATTAC | CCGGGTAAC | - |
SPT23#MA0388.1 | -4 | 0.0197684 | 9.40975 | 0.691072 | 8 | CGGGGAAATTAC | GAAATCAA | + |