Coexpression cluster:C49

Full id: C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma

Phase1 CAGE Peaks

Hg19::chr10:101673730..101673781,-	p3@DNMBP
Hg19::chr10:118085026..118085031,+	p@chr10:118085026..118085031 +
Hg19::chr10:126138622..126138638,-	p2@NKX1-2
Hg19::chr10:13390193..13390218,-	p4@SEPHS1
Hg19::chr10:13390222..13390246,-	p1@SEPHS1
Hg19::chr10:13390252..13390269,-	p5@SEPHS1
Hg19::chr10:135042855..135042873,+	p@chr10:135042855..135042873 +
Hg19::chr10:135051422..135051430,+	p2@VENTX
Hg19::chr10:21581922..21581939,-	p@chr10:21581922..21581939 -
Hg19::chr10:21581957..21581984,-	p@chr10:21581957..21581984 -
Hg19::chr10:21581987..21581994,-	p@chr10:21581987..21581994 -
Hg19::chr10:21581995..21582005,-	p@chr10:21581995..21582005 -
Hg19::chr10:58982431..58982442,-	p@chr10:58982431..58982442 -
Hg19::chr10:58982443..58982473,-	p@chr10:58982443..58982473 -
Hg19::chr10:69039925..69039934,-	p@chr10:69039925..69039934 -
Hg19::chr10:75407175..75407186,-	p@chr10:75407175..75407186 -
Hg19::chr10:92055064..92055067,+	p@chr10:92055064..92055067 +
Hg19::chr10:94833642..94833655,+	p1@CYP26A1
Hg19::chr10:94833710..94833721,+	p2@CYP26A1
Hg19::chr11:118505854..118505856,+	p59@PHLDB1
Hg19::chr11:131123297..131123306,+	p2@ENST00000416553
Hg19::chr11:133788673..133788715,-	p@chr11:133788673..133788715 -
Hg19::chr11:134146589..134146608,-	p@chr11:134146589..134146608 -
Hg19::chr11:17035711..17035737,+	p4@OR7E14P
Hg19::chr11:3210693..3210702,+	p1@ENST00000455154
Hg19::chr11:59583386..59583418,-	p@chr11:59583386..59583418 -
Hg19::chr11:62525488..62525511,-	p@chr11:62525488..62525511 -
Hg19::chr11:62525554..62525590,-	p@chr11:62525554..62525590 -
Hg19::chr11:68518185..68518213,-	p3@MTL5
Hg19::chr11:73703204..73703213,-	p1@ENST00000534962
Hg19::chr12:113909667..113909681,-	p1@LHX5
Hg19::chr12:113909805..113909830,+	p1@ENST00000551357
Hg19::chr12:120808022..120808031,-	p@chr12:120808022..120808031 -
Hg19::chr12:122018114..122018137,-	p8@KDM2B
Hg19::chr12:122018409..122018432,-	p12@KDM2B
Hg19::chr12:12837423..12837501,-	p1@GPR19
Hg19::chr12:42878101..42878133,-	p6@PRICKLE1
Hg19::chr12:55808623..55808650,-	p2@PHC1P1
Hg19::chr12:59721532..59721540,-	p@chr12:59721532..59721540 -
Hg19::chr12:59721677..59721683,-	p@chr12:59721677..59721683 -
Hg19::chr12:7941942..7941949,+	p3@NANOG
Hg19::chr12:7941989..7942014,+	p1@NANOG
Hg19::chr12:9066419..9066470,+	p3@PHC1
Hg19::chr12:9066472..9066482,+	p8@PHC1
Hg19::chr12:9067527..9067542,+	p@chr12:9067527..9067542 +
Hg19::chr12:9067566..9067591,+	p@chr12:9067566..9067591 +
Hg19::chr12:95942538..95942549,-	p7@USP44
Hg19::chr12:95945132..95945163,-	p2@USP44
Hg19::chr12:95945196..95945210,-	p5@USP44
Hg19::chr12:95945213..95945244,-	p3@USP44
Hg19::chr12:95945246..95945270,-	p4@USP44
Hg19::chr12:97858864..97858882,+	p@chr12:97858864..97858882 +
Hg19::chr12:97858908..97858920,+	p@chr12:97858908..97858920 +
Hg19::chr12:97858979..97858990,+	p@chr12:97858979..97858990 +
Hg19::chr12:97859010..97859021,+	p@chr12:97859010..97859021 +
Hg19::chr13:31437608..31437620,+	p@chr13:31437608..31437620 +
Hg19::chr13:31437623..31437639,+	p@chr13:31437623..31437639 +
Hg19::chr13:38489413..38489420,+	p@chr13:38489413..38489420 +
Hg19::chr13:53313884..53313897,-	p2@LECT1
Hg19::chr13:53313905..53313964,-	p1@LECT1
Hg19::chr13:53314077..53314084,-	p5@LECT1
Hg19::chr13:53314109..53314157,-	p4@LECT1
Hg19::chr13:54842617..54842628,+	p@chr13:54842617..54842628 +
Hg19::chr13:56153143..56153144,-	p@chr13:56153143..56153144 -
Hg19::chr13:56156997..56157026,-	p@chr13:56156997..56157026 -
Hg19::chr14:21175008..21175030,-	p3@ENST00000554286
Hg19::chr14:21175067..21175069,-	p4@ENST00000554286
Hg19::chr14:21175070..21175084,-	p2@ENST00000554286
Hg19::chr14:21175090..21175105,-	p1@ENST00000554286
Hg19::chr14:21296272..21296293,-	p@chr14:21296272..21296293 -
Hg19::chr14:22005018..22005040,-	p6@SALL2
Hg19::chr14:22005062..22005082,-	p7@SALL2
Hg19::chr14:22005197..22005261,-	p3@SALL2
Hg19::chr14:22005343..22005364,-	p5@SALL2
Hg19::chr14:47573982..47573999,+	p@chr14:47573982..47573999 +
Hg19::chr14:48729724..48729726,-	p@chr14:48729724..48729726 -
Hg19::chr14:48729843..48729847,-	p@chr14:48729843..48729847 -
Hg19::chr14:64653046..64653095,+	p@chr14:64653046..64653095 +
Hg19::chr14:74815145..74815202,+	p1@VRTN
Hg19::chr14:96342779..96342790,+	p5@ENST00000504119
Hg19::chr14:96342861..96342881,+	p4@ENST00000504119
Hg19::chr14:96459422..96459424,-	p@chr14:96459422..96459424 -
Hg19::chr15:35354346..35354365,-	p@chr15:35354346..35354365 -
Hg19::chr15:40213106..40213121,-	p5@GPR176
Hg19::chr15:40731950..40731964,+	p9@BAHD1
Hg19::chr15:52228372..52228406,-	p@chr15:52228372..52228406 -
Hg19::chr15:53097013..53097030,-	p2@ENST00000560818
Hg19::chr15:53097083..53097098,-	p1@ENST00000560818
Hg19::chr15:57678413..57678419,+	p@chr15:57678413..57678419 +
Hg19::chr15:65067687..65067701,-	p5@RBPMS2
Hg19::chr15:85144307..85144329,+	p2@ZSCAN2
Hg19::chr15:85147104..85147119,+	p6@ZSCAN2
Hg19::chr15:85147127..85147142,+	p5@ZSCAN2
Hg19::chr15:88579498..88579502,-	p@chr15:88579498..88579502 -
Hg19::chr16:14377812..14377847,-	p@chr16:14377812..14377847 -
Hg19::chr16:29747108..29747111,+	p@chr16:29747108..29747111 +
Hg19::chr16:30935164..30935196,+	p2@FBXL19
Hg19::chr16:3149266..3149277,-	p2@ZSCAN10
Hg19::chr16:3149278..3149305,-	p1@ZSCAN10
Hg19::chr16:65268795..65268836,-	p@chr16:65268795..65268836 -
Hg19::chr16:69139617..69139628,+	p3@HAS3
Hg19::chr17:27045427..27045451,-	p7@RAB34
Hg19::chr17:27045488..27045508,-	p12@RAB34
Hg19::chr17:47892398..47892407,+	p2@KAT7
Hg19::chr17:65970934..65970949,-	p@chr17:65970934..65970949 -
Hg19::chr17:7580758..7580773,-	p20@TP53
Hg19::chr17:8066843..8066858,-	p20@VAMP2
Hg19::chr18:29399308..29399314,+	p@chr18:29399308..29399314 +
Hg19::chr18:29523326..29523366,+	p@chr18:29523326..29523366 +
Hg19::chr18:29598576..29598585,+	p6@RNF125
Hg19::chr18:3603958..3603976,+	p4@ENST00000445581 p4@uc002kmi.2
Hg19::chr18:44526786..44526811,+	p4@KATNAL2
Hg19::chr18:56530136..56530199,+	p3@ZNF532
Hg19::chr18:76739996..76740012,-	p@chr18:76739996..76740012 -
Hg19::chr18:76740023..76740045,-	p@chr18:76740023..76740045 -
Hg19::chr18:76740152..76740186,+	p2@SALL3
Hg19::chr19:10765673..10765687,+	p@chr19:10765673..10765687 +
Hg19::chr19:10765699..10765728,+	p@chr19:10765699..10765728 +
Hg19::chr19:12936544..12936548,+	p1@CU674986
Hg19::chr19:19748353..19748362,-	p@chr19:19748353..19748362 -
Hg19::chr19:23598780..23598811,-	p2@ENST00000499882 p2@uc002nrh.1
Hg19::chr19:36164281..36164298,+	p@chr19:36164281..36164298 +
Hg19::chr19:36164312..36164325,+	p@chr19:36164312..36164325 +
Hg19::chr19:36275677..36275698,+	p@chr19:36275677..36275698 +
Hg19::chr19:3933060..3933081,+	p3@ITGB1BP3
Hg19::chr19:3933085..3933103,+	p4@ITGB1BP3
Hg19::chr19:40006057..40006068,+	p2@SELV
Hg19::chr19:50795882..50795891,+	p@chr19:50795882..50795891 +
Hg19::chr19:52996047..52996089,+	p@chr19:52996047..52996089 +
Hg19::chr19:55593143..55593185,+	p5@EPS8L1
Hg19::chr19:55603889..55603900,-	p@chr19:55603889..55603900 -
Hg19::chr19:55668143..55668174,-	p@chr19:55668143..55668174 -
Hg19::chr19:56163789..56163799,+	p@chr19:56163789..56163799 +
Hg19::chr1:114695537..114695554,-	p1@SYT6
Hg19::chr1:11751574..11751662,-	p3@MAD2L2
Hg19::chr1:11751835..11751892,-	p4@MAD2L2
Hg19::chr1:154581144..154581155,-	p17@ADAR
Hg19::chr1:154581182..154581204,-	p7@ADAR
Hg19::chr1:155402929..155402937,+	p1@POU5F1P4
Hg19::chr1:156119979..156120000,+	p8@SEMA4A
Hg19::chr1:16174050..16174075,+	p7@SPEN
Hg19::chr1:200380921..200380947,+	p1@uc010ppi.1
Hg19::chr1:223198500..223198519,-	p@chr1:223198500..223198519 -
Hg19::chr1:223202451..223202455,-	p@chr1:223202451..223202455 -
Hg19::chr1:24790417..24790440,+	p@chr1:24790417..24790440 +
Hg19::chr1:26737253..26737268,+	p2@LIN28A
Hg19::chr1:26737274..26737286,+	p3@LIN28A
Hg19::chr1:26737292..26737322,+	p1@LIN28A
Hg19::chr1:26753181..26753186,+	p@chr1:26753181..26753186 +
Hg19::chr1:29063272..29063283,+	p14@YTHDF2
Hg19::chr1:29063287..29063301,+	p7@YTHDF2
Hg19::chr1:29063305..29063346,+	p3@YTHDF2
Hg19::chr1:36020531..36020557,-	p8@KIAA0319L
Hg19::chr1:53905039..53905072,-	p2@ENST00000443844
Hg19::chr1:53905204..53905220,-	p1@ENST00000443844
Hg19::chr1:6260896..6260907,-	p13@RPL22
Hg19::chr1:62660375..62660393,+	p4@L1TD1
Hg19::chr1:62660484..62660495,+	p3@L1TD1
Hg19::chr1:62660501..62660564,+	p1@L1TD1
Hg19::chr1:62661928..62661962,+	p@chr1:62661928..62661962 +
Hg19::chr1:62661968..62661996,+	p@chr1:62661968..62661996 +
Hg19::chr1:62668364..62668368,+	p@chr1:62668364..62668368 +
Hg19::chr1:62672541..62672554,+	p2@L1TD1
Hg19::chr1:62672658..62672669,+	p5@L1TD1
Hg19::chr1:62675452..62675463,+	p@chr1:62675452..62675463 +
Hg19::chr1:6304233..6304243,+	p1@HES3
Hg19::chr1:63787296..63787311,-	p1@ENST00000426393
Hg19::chr1:63787320..63787340,-	p2@ENST00000426393
Hg19::chr1:63787569..63787587,-	p4@ENST00000426393
Hg19::chr20:3024266..3024272,+	p1@GNRH2
Hg19::chr20:31331744..31331765,-	p3@COMMD7
Hg19::chr20:31331767..31331783,-	p4@COMMD7
Hg19::chr20:31350184..31350200,+	p1@DNMT3B
Hg19::chr20:31368212..31368235,+	p2@DNMT3B
Hg19::chr20:31369159..31369166,+	p@chr20:31369159..31369166 +
Hg19::chr20:31375131..31375149,-	p@chr20:31375131..31375149 -
Hg19::chr20:31396006..31396015,+	p@chr20:31396006..31396015 +
Hg19::chr20:35200140..35200151,-	p@chr20:35200140..35200151 -
Hg19::chr20:35202909..35202963,+	p2@TGIF2 p3@C20orf24
Hg19::chr20:38900598..38900615,+	p@chr20:38900598..38900615 +
Hg19::chr20:45997861..45997878,-	p@chr20:45997861..45997878 -
Hg19::chr20:45997932..45997935,-	p@chr20:45997932..45997935 -
Hg19::chr20:45997938..45997948,-	p@chr20:45997938..45997948 -
Hg19::chr20:50418128..50418147,-	p2@SALL4
Hg19::chr20:50418972..50419029,-	p1@SALL4
Hg19::chr20:50419055..50419066,-	p3@SALL4
Hg19::chr20:50419071..50419079,-	p9@SALL4
Hg19::chr20:62572758..62572766,-	p11@UCKL1
Hg19::chr21:46168812..46168831,+	p@chr21:46168812..46168831 +
Hg19::chr21:46168834..46168857,+	p@chr21:46168834..46168857 +
Hg19::chr22:31495027..31495048,+	p@chr22:31495027..31495048 +
Hg19::chr22:38493783..38493794,-	p@chr22:38493783..38493794 -
Hg19::chr22:38732156..38732200,-	p6@CSNK1E
Hg19::chr22:39413746..39413766,+	p@chr22:39413746..39413766 +
Hg19::chr22:39413828..39413848,+	p@chr22:39413828..39413848 +
Hg19::chr2:196451015..196451038,+	p@chr2:196451015..196451038 +
Hg19::chr2:206949880..206949891,+	p8@ENST00000435627
Hg19::chr2:210073840..210073851,-	p@chr2:210073840..210073851 -
Hg19::chr2:233285879..233285893,-	p@chr2:233285879..233285893 -
Hg19::chr2:233285898..233285907,-	p@chr2:233285898..233285907 -
Hg19::chr2:233285930..233285938,-	p@chr2:233285930..233285938 -
Hg19::chr2:233285959..233285964,-	p@chr2:233285959..233285964 -
Hg19::chr2:233285967..233285976,-	p@chr2:233285967..233285976 -
Hg19::chr2:233286046..233286057,-	p@chr2:233286046..233286057 -
Hg19::chr2:25475094..25475112,-	p3@DNMT3A
Hg19::chr2:42722039..42722056,-	p@chr2:42722039..42722056 -
Hg19::chr2:42722152..42722157,-	p@chr2:42722152..42722157 -
Hg19::chr2:42795483..42795497,+	p16@MTA3
Hg19::chr2:52565599..52565602,+	p@chr2:52565599..52565602 +
Hg19::chr2:67559007..67559030,+	p@chr2:67559007..67559030 +
Hg19::chr2:67563903..67563912,+	p@chr2:67563903..67563912 +
Hg19::chr2:76806798..76806811,+	p@chr2:76806798..76806811 +
Hg19::chr2:76826657..76826660,+	p@chr2:76826657..76826660 +
Hg19::chr2:76920664..76920667,+	p@chr2:76920664..76920667 +
Hg19::chr2:76923698..76923702,+	p@chr2:76923698..76923702 +
Hg19::chr2:8016767..8016785,+	p@chr2:8016767..8016785 +
Hg19::chr2:88752231..88752245,-	p2@FOXI3
Hg19::chr2:88752256..88752265,-	p3@FOXI3
Hg19::chr2:88838222..88838224,+	p1@ENST00000413234
Hg19::chr2:946414..946430,-	p2@ENST00000456949
Hg19::chr2:946431..946448,-	p1@ENST00000456949
Hg19::chr2:946449..946463,-	p3@ENST00000456949
Hg19::chr3:109033420..109033429,-	p@chr3:109033420..109033429 -
Hg19::chr3:109045929..109045945,-	p@chr3:109045929..109045945 -
Hg19::chr3:109049145..109049147,-	p5@DPPA4
Hg19::chr3:109050105..109050109,-	p4@DPPA4
Hg19::chr3:109052194..109052196,-	p@chr3:109052194..109052196 -
Hg19::chr3:109056334..109056384,-	p1@DPPA4
Hg19::chr3:109056387..109056400,-	p2@DPPA4
Hg19::chr3:109056429..109056438,-	p3@DPPA4
Hg19::chr3:109056581..109056596,+	p1@ENST00000508178
Hg19::chr3:109056615..109056622,+	p3@ENST00000508178
Hg19::chr3:112145303..112145318,-	p@chr3:112145303..112145318 -
Hg19::chr3:115824309..115824311,-	p@chr3:115824309..115824311 -
Hg19::chr3:185300242..185300263,+	p8@SENP2
Hg19::chr3:185797682..185797689,-	p16@ETV5
Hg19::chr3:185797712..185797746,-	p6@ETV5
Hg19::chr3:32858112..32858132,+	p@chr3:32858112..32858132 +
Hg19::chr3:32858228..32858237,+	p@chr3:32858228..32858237 +
Hg19::chr3:32858319..32858331,+	p@chr3:32858319..32858331 +
Hg19::chr3:32858508..32858525,+	p@chr3:32858508..32858525 +
Hg19::chr3:32858527..32858538,+	p@chr3:32858527..32858538 +
Hg19::chr3:32858554..32858574,+	p@chr3:32858554..32858574 +
Hg19::chr3:32858578..32858597,+	p@chr3:32858578..32858597 +
Hg19::chr3:32858612..32858631,+	p@chr3:32858612..32858631 +
Hg19::chr3:32859593..32859606,+	p3@TRIM71
Hg19::chr3:32933438..32933442,+	p@chr3:32933438..32933442 +
Hg19::chr3:32937944..32937946,+	p@chr3:32937944..32937946 +
Hg19::chr3:46619270..46619296,+	p1@TDGF1
Hg19::chr3:57234000..57234014,-	p1@HESX1
Hg19::chr3:62936055..62936065,+	p2@ENST00000475886
Hg19::chr3:98044020..98044032,-	p@chr3:98044020..98044032 -
Hg19::chr4:113568122..113568128,-	p@chr4:113568122..113568128 -
Hg19::chr4:113568615..113568631,-	p@chr4:113568615..113568631 -
Hg19::chr4:113569337..113569342,-	p1@MIR302A
Hg19::chr4:113569516..113569523,-	p1@MIR302C
Hg19::chr4:113571650..113571659,+	p@chr4:113571650..113571659 +
Hg19::chr4:113573695..113573706,+	p@chr4:113573695..113573706 +
Hg19::chr4:165798135..165798147,+	p1@LOC100506013
Hg19::chr4:165798277..165798293,+	p2@uc003iqv.1
Hg19::chr4:165798298..165798312,+	p3@uc003iqv.1
Hg19::chr4:165798317..165798356,+	p1@ENST00000515275 p1@uc003iqv.1
Hg19::chr4:187168395..187168407,-	p@chr4:187168395..187168407 -
Hg19::chr4:188916918..188916942,+	p1@ZFP42
Hg19::chr4:26030535..26030540,+	p@chr4:26030535..26030540 +
Hg19::chr4:42294654..42294660,-	p@chr4:42294654..42294660 -
Hg19::chr4:54343225..54343238,-	p@chr4:54343225..54343238 -
Hg19::chr4:62635341..62635352,-	p@chr4:62635341..62635352 -
Hg19::chr4:93197815..93197819,-	p@chr4:93197815..93197819 -
Hg19::chr4:93365408..93365414,-	p@chr4:93365408..93365414 -
Hg19::chr5:115910646..115910657,-	p6@SEMA6A
Hg19::chr5:115910716..115910730,-	p5@SEMA6A
Hg19::chr5:12625067..12625085,+	p@chr5:12625067..12625085 +
Hg19::chr5:12662855..12662861,+	p@chr5:12662855..12662861 +
Hg19::chr5:176558787..176558804,+	p@chr5:176558787..176558804 +
Hg19::chr5:25435544..25435548,-	p@chr5:25435544..25435548 -
Hg19::chr5:25444309..25444313,-	p@chr5:25444309..25444313 -
Hg19::chr5:25444735..25444746,-	p@chr5:25444735..25444746 -
Hg19::chr5:28930096..28930106,+	p@chr5:28930096..28930106 +
Hg19::chr5:93697927..93697941,-	p@chr5:93697927..93697941 -
Hg19::chr5:93698011..93698039,-	p@chr5:93698011..93698039 -
Hg19::chr6:105388488..105388535,+	p@chr6:105388488..105388535 +
Hg19::chr6:105405563..105405584,+	p4@LIN28B
Hg19::chr6:10556030..10556063,+	p10@GCNT2
Hg19::chr6:10556088..10556099,+	p21@GCNT2
Hg19::chr6:107436524..107436543,-	p5@BEND3
Hg19::chr6:121756737..121756744,+	p3@GJA1
Hg19::chr6:126066762..126066773,-	p@chr6:126066762..126066773 -
Hg19::chr6:131615558..131615562,+	p@chr6:131615558..131615562 +
Hg19::chr6:131624969..131624980,+	p@chr6:131624969..131624980 +
Hg19::chr6:15022187..15022205,-	p@chr6:15022187..15022205 -
Hg19::chr6:15245797..15245818,+	p8@JARID2
Hg19::chr6:167641710..167641733,+	p@chr6:167641710..167641733 +
Hg19::chr6:167641759..167641804,+	p@chr6:167641759..167641804 +
Hg19::chr6:167641809..167641819,+	p@chr6:167641809..167641819 +
Hg19::chr6:24403144..24403224,+	p1@MRS2
Hg19::chr6:25966448..25966461,+	p7@TRIM38
Hg19::chr6:30816014..30816035,-	p1@ENST00000442852
Hg19::chr6:31138055..31138073,-	p3@POU5F1
Hg19::chr6:31138439..31138475,-	p1@POU5F1
Hg19::chr6:33084418..33084441,+	p@chr6:33084418..33084441 +
Hg19::chr6:33084479..33084506,+	p@chr6:33084479..33084506 +
Hg19::chr6:33084750..33084762,+	p@chr6:33084750..33084762 +
Hg19::chr6:43276547..43276569,-	p1@CRIP3
Hg19::chr6:43276577..43276588,-	p2@CRIP3
Hg19::chr6:4773257..4773270,+	p2@CDYL
Hg19::chr6:4773291..4773301,+	p8@CDYL
Hg19::chr6:4773312..4773315,+	p13@CDYL
Hg19::chr7:100942887..100942911,+	p1@ENST00000429254
Hg19::chr7:100942917..100942920,+	p2@ENST00000429254
Hg19::chr7:100946049..100946091,+	p@chr7:100946049..100946091 +
Hg19::chr7:100951567..100951611,+	p1@uc003uyk.1
Hg19::chr7:116096018..116096020,+	p@chr7:116096018..116096020 +
Hg19::chr7:138144983..138145011,+	p2@TRIM24
Hg19::chr7:2395218..2395237,-	p@chr7:2395218..2395237 -
Hg19::chr7:33391564..33391595,+	p@chr7:33391564..33391595 +
Hg19::chr7:75889941..75889953,+	p@chr7:75889941..75889953 +
Hg19::chr7:78197672..78197686,-	p@chr7:78197672..78197686 -
Hg19::chr8:115294306..115294320,+	p1@ENST00000520543
Hg19::chr8:132320836..132320868,+	p1@ENST00000519695 p1@ENST00000524275
Hg19::chr8:145105424..145105440,+	p@chr8:145105424..145105440 +
Hg19::chr8:145701166..145701187,-	p2@FOXH1
Hg19::chr8:145701192..145701241,-	p1@FOXH1
Hg19::chr8:39759861..39759881,+	p3@IDO1
Hg19::chr8:70983443..70983460,-	p2@PRDM14
Hg19::chr8:70983462..70983471,-	p4@PRDM14
Hg19::chr8:70983476..70983493,-	p1@PRDM14
Hg19::chr8:70983506..70983522,-	p3@PRDM14
Hg19::chr8:70985091..70985097,-	p@chr8:70985091..70985097 -
Hg19::chr8:73921067..73921078,+	p3@TERF1
Hg19::chr8:73921136..73921151,+	p2@TERF1
Hg19::chr8:841869..841879,+	p@chr8:841869..841879 +
Hg19::chr8:91803695..91803706,+	p7@NECAB1
Hg19::chr8:91940391..91940398,+	p@chr8:91940391..91940398 +
Hg19::chr8:9915231..9915236,+	p@chr8:9915231..9915236 +
Hg19::chr9:131446083..131446092,+	p14@SET
Hg19::chr9:131446097..131446114,+	p4@SET
Hg19::chr9:132549146..132549157,+	p@chr9:132549146..132549157 +
Hg19::chr9:72435715..72435739,+	p1@C9orf135
Hg19::chr9:72435749..72435764,+	p2@C9orf135
Hg19::chr9:85396480..85396482,-	p@chr9:85396480..85396482 -
Hg19::chr9:85499033..85499065,+	p@chr9:85499033..85499065 +
Hg19::chr9:90025826..90025842,+	p@chr9:90025826..90025842 +
Hg19::chrX:102997528..102997540,+	p@chrX:102997528..102997540 +
Hg19::chrX:103015274..103015278,+	p@chrX:103015274..103015278 +
Hg19::chrX:103021943..103021973,-	p@chrX:103021943..103021973 -
Hg19::chrX:113235164..113235187,-	p@chrX:113235164..113235187 -
Hg19::chrX:113300804..113300807,+	p@chrX:113300804..113300807 +
Hg19::chrX:113841312..113841332,-	p@chrX:113841312..113841332 -
Hg19::chrX:114957287..114957307,+	p1@ENST00000451869
Hg19::chrX:114957329..114957350,+	p1@ENST00000415394
Hg19::chrX:114957368..114957379,+	p2@ENST00000415394
Hg19::chrX:128225319..128225335,+	p@chrX:128225319..128225335 +
Hg19::chrX:133308067..133308078,-	p@chrX:133308067..133308078 -
Hg19::chrX:153095771..153095780,-	p19@PDZD4
Hg19::chrX:153095817..153095832,-	p3@PDZD4
Hg19::chrX:153095959..153095971,-	p10@PDZD4
Hg19::chrX:153095982..153096013,-	p2@PDZD4
Hg19::chrX:16186799..16186803,-	p@chrX:16186799..16186803 -
Hg19::chrX:16202178..16202185,-	p@chrX:16202178..16202185 -
Hg19::chrX:16594524..16594529,+	p@chrX:16594524..16594529 +
Hg19::chrX:16595231..16595235,+	p@chrX:16595231..16595235 +
Hg19::chrX:2882369..2882397,-	p2@ARSE
Hg19::chrX:40944690..40944704,+	p1@USP9X
Hg19::chrX:40945779..40945807,+	p@chrX:40945779..40945807 +
Hg19::chrX:70150939..70150952,-	p1@SLC7A3
Hg19::chrX:95229339..95229345,-	p1@ENST00000444292
Hg19::chrX:96565590..96565618,+	p@chrX:96565590..96565618 +
Hg19::chrX:97828824..97828848,+	p@chrX:97828824..97828848 +

Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

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No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

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GO ID	GO name	FDR corrected p-value
GO:0003677	DNA binding	3.95036411579275e-15
GO:0005634	nucleus	1.20737198218058e-10
GO:0019222	regulation of metabolic process	1.2954821097401e-10
GO:0031323	regulation of cellular metabolic process	1.2954821097401e-10
GO:0019219	regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	1.2954821097401e-10
GO:0050794	regulation of cellular process	1.75651419149499e-10
GO:0006355	regulation of transcription, DNA-dependent	2.65857670272778e-10
GO:0010468	regulation of gene expression	3.30540380273447e-10
GO:0050789	regulation of biological process	4.50925840855671e-10
GO:0045449	regulation of transcription	4.50925840855671e-10
GO:0006351	transcription, DNA-dependent	4.50925840855671e-10
GO:0032774	RNA biosynthetic process	4.50925840855671e-10
GO:0006350	transcription	1.85301713394524e-09
GO:0043231	intracellular membrane-bound organelle	2.16633446218497e-09
GO:0043227	membrane-bound organelle	2.16633446218497e-09
GO:0065007	biological regulation	2.44035625068062e-09
GO:0016070	RNA metabolic process	4.33394817796637e-08
GO:0043283	biopolymer metabolic process	8.20472778744412e-08
GO:0007275	multicellular organismal development	4.28603624078332e-07
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	4.72973755730249e-07
GO:0043229	intracellular organelle	5.62229326061631e-07
GO:0043226	organelle	5.62229326061631e-07
GO:0010467	gene expression	1.26337489093366e-06
GO:0003676	nucleic acid binding	1.53778188763554e-06
GO:0044424	intracellular part	1.53778188763554e-06
GO:0043565	sequence-specific DNA binding	1.30599182065928e-05
GO:0003700	transcription factor activity	2.29393153517212e-05
GO:0005622	intracellular	4.34543701848668e-05
GO:0008270	zinc ion binding	6.91704608320932e-05
GO:0043170	macromolecule metabolic process	0.00026424115832834
GO:0032502	developmental process	0.000398075066182975
GO:0046914	transition metal ion binding	0.000713132997593127
GO:0032501	multicellular organismal process	0.00531395199956216
GO:0044238	primary metabolic process	0.00566905222576778
GO:0044464	cell part	0.0104126099465675
GO:0046872	metal ion binding	0.0212378991688859
GO:0043169	cation binding	0.0212378991688859
GO:0044237	cellular metabolic process	0.0241679808359093
GO:0043167	ion binding	0.0274850187662175
GO:0009893	positive regulation of metabolic process	0.0297645329767371
GO:0010232	vascular transport	0.0297645329767371
GO:0018144	RNA-protein covalent cross-linking	0.0297645329767371
GO:0035067	negative regulation of histone acetylation	0.0297645329767371
GO:0051095	regulation of helicase activity	0.0297645329767371
GO:0051097	negative regulation of helicase activity	0.0297645329767371
GO:0018143	nucleic acid-protein covalent cross-linking	0.0297645329767371
GO:0031057	negative regulation of histone modification	0.0297645329767371
GO:0016929	SUMO-specific protease activity	0.0297645329767371
GO:0008326	site-specific DNA-methyltransferase (cytosine-specific) activity	0.0297645329767371
GO:0015326	cationic amino acid transmembrane transporter activity	0.0297645329767371
GO:0032444	activin responsive factor complex	0.0297645329767371
GO:0015819	lysine transport	0.0297645329767371
GO:0008401	retinoic acid 4-hydroxylase activity	0.0297645329767371
GO:0030948	negative regulation of vascular endothelial growth factor receptor signaling pathway	0.0297645329767371
GO:0015181	arginine transmembrane transporter activity	0.0297645329767371
GO:0015189	L-lysine transmembrane transporter activity	0.0297645329767371
GO:0003682	chromatin binding	0.0304552529509428
GO:0007276	gamete generation	0.0366063061321303
GO:0019783	small conjugating protein-specific protease activity	0.046711025402069
GO:0048856	anatomical structure development	0.0475713832166307
GO:0016264	gap junction assembly	0.0475713832166307
GO:0042149	cellular response to glucose starvation	0.0475713832166307
GO:0015867	ATP transport	0.0475713832166307
GO:0051503	adenine nucleotide transport	0.0475713832166307
GO:0003691	double-stranded telomeric DNA binding	0.0475713832166307
GO:0015809	arginine transport	0.0475713832166307
GO:0015865	purine nucleotide transport	0.0475713832166307
GO:0045844	positive regulation of striated muscle development	0.0475713832166307
GO:0035065	regulation of histone acetylation	0.0475713832166307
GO:0000739	DNA strand annealing activity	0.0475713832166307

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

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Cell Type

Ontology term	p-value	n
epithelial cell	1.57e-19	254
neural cell	1.31e-07	25

Uber Anatomy

Ontology term	p-value	n
regional part of nervous system	2.20e-23	94
nervous system	2.20e-23	94
central nervous system	1.30e-21	82
ectoderm	2.63e-21	173
presumptive ectoderm	2.63e-21	173
neurectoderm	1.26e-20	90
ectoderm-derived structure	1.08e-19	169
neural plate	7.85e-19	86
presumptive neural plate	7.85e-19	86
neural tube	4.21e-17	57
neural rod	4.21e-17	57
future spinal cord	4.21e-17	57
neural keel	4.21e-17	57
brain	1.75e-16	69
future brain	1.75e-16	69
organ part	1.78e-16	219
pre-chordal neural plate	7.68e-15	61
regional part of brain	1.67e-14	59
anterior region of body	1.87e-14	129
craniocervical region	1.87e-14	129
head	3.63e-14	123
regional part of forebrain	7.04e-13	41
forebrain	7.04e-13	41
future forebrain	7.04e-13	41
anterior neural tube	1.56e-12	42
gray matter	7.55e-11	34
brain grey matter	7.55e-11	34
telencephalon	1.04e-10	34
regional part of telencephalon	1.96e-10	33
cerebral hemisphere	3.10e-10	32
cell layer	1.17e-09	312
multi-tissue structure	1.65e-09	347
epithelium	2.64e-09	309
cerebral cortex	8.67e-08	25
pallium	8.67e-08	25
organism subdivision	1.02e-07	365
trunk region element	2.03e-07	107
anatomical cluster	6.21e-07	286
tube	6.95e-07	194
cavitated compound organ	7.35e-07	32
organ segment	7.69e-07	97

Disease

Ontology term	p-value	n
cancer	8.40e-25	235
cell type cancer	1.19e-24	143
disease of cellular proliferation	5.68e-23	239
carcinoma	8.63e-21	106
germ cell and embryonal cancer	1.01e-09	22
germ cell cancer	1.01e-09	22
organ system cancer	2.75e-08	137

Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

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Novel motifs

JASPAR motifs

Motifs	-log10(p-value)
{{{tfbs_overrepresentation_jaspar}}}

ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

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(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF	#promoters	Enrichment	p-value	q-value
BCL11A#53335	25	1.92204980376742	0.00162439411405001	0.0101678212093059
CTBP2#1488	17	2.88940109964384	0.000116215029985314	0.0015793599891524
NANOG#79923	78	6.18182309354739	3.33551519093832e-38	1.7956591290021e-35
POLR2A#5430	230	1.33852095015815	8.1705249827463e-10	7.68758070876613e-08
POU5F1#5460	34	30.9076770985496	2.57280266612752e-39	1.45243750079833e-36
SP1#6667	90	1.38984911661973	0.0005596376442309	0.00477633373586916
TAF1#6872	183	1.6579335238249	1.89067109621869e-15	3.47640490524619e-13
TAF7#6879	95	2.94347315302919	5.55656838565741e-22	1.54341075965339e-19
TBP#6908	148	1.48672645444516	3.06564915825508e-08	2.07231930381231e-06

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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