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MCL coexpression mm9:2248: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000988!1.79e-10!32;CL:0002032!1.79e-10!32;CL:0000037!1.79e-10!32;CL:0000566!1.79e-10!32;CL:0000837!1.79e-10!32;CL:0002031!3.92e-10!25;CL:0002320!2.16e-09!46;CL:0000134!2.16e-09!46;CL:0000738!5.95e-08!17;CL:0002087!5.95e-08!17;CL:0000838!1.72e-07!12;CL:0000084!7.51e-07!11;CL:0000827!7.51e-07!11
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002193!1.97e-20!48;UBERON:0002405!1.97e-20!48;UBERON:0002390!1.16e-19!45;UBERON:0003061!1.16e-19!45;UBERON:0003081!8.46e-15!87;UBERON:0000077!1.45e-13!35;UBERON:0004177!1.17e-12!29;UBERON:0005057!1.17e-12!29;UBERON:0003408!1.96e-10!24;UBERON:0002204!2.05e-10!32;UBERON:0006562!2.19e-10!24;UBERON:0001557!2.19e-10!24;UBERON:0001042!2.19e-10!24;UBERON:0008814!2.19e-10!24;UBERON:0009145!2.19e-10!24;UBERON:0002370!4.33e-10!23;UBERON:0000974!4.33e-10!23;UBERON:0004807!4.33e-10!23;UBERON:0005058!4.33e-10!23;UBERON:0003351!4.33e-10!23;UBERON:0009113!4.33e-10!23;UBERON:0003295!4.33e-10!23;UBERON:0009722!4.33e-10!23;UBERON:0005562!4.33e-10!23;UBERON:0007690!4.33e-10!23;UBERON:0000926!5.32e-10!120;UBERON:0004120!5.32e-10!120;UBERON:0006603!5.32e-10!120;UBERON:0002384!2.16e-09!46;UBERON:0001041!8.01e-09!80;UBERON:0001004!1.04e-08!42;UBERON:0000065!2.22e-08!41;UBERON:0002371!9.22e-08!16;UBERON:0001474!1.01e-07!22;UBERON:0004765!1.01e-07!22;UBERON:0001434!1.01e-07!22;UBERON:0000072!4.15e-07!27;UBERON:0000475!9.70e-07!150
}}
}}

Revision as of 18:09, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr18:80904854..80904919,-p2@Nfatc1
Mm9::chr2:22629952..22629992,+p2@Apbb1ip
Mm9::chr6:149258304..149258346,+p3@2810474O19Rik
Mm9::chr8:106763644..106763679,+p@chr8:106763644..106763679
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
hemolymphoid system1.97e-2048
immune system1.97e-2048
hematopoietic system1.16e-1945
blood island1.16e-1945
lateral plate mesoderm8.46e-1587
mixed endoderm/mesoderm-derived structure1.45e-1335
hemopoietic organ1.17e-1229
immune organ1.17e-1229
gland of gut1.96e-1024
musculoskeletal system2.05e-1032
pharynx2.19e-1024
upper respiratory tract2.19e-1024
chordate pharynx2.19e-1024
pharyngeal arch system2.19e-1024
pharyngeal region of foregut2.19e-1024
thymus4.33e-1023
neck4.33e-1023
respiratory system epithelium4.33e-1023
hemolymphoid system gland4.33e-1023
pharyngeal epithelium4.33e-1023
thymic region4.33e-1023
pharyngeal gland4.33e-1023
entire pharyngeal arch endoderm4.33e-1023
thymus primordium4.33e-1023
early pharyngeal endoderm4.33e-1023
mesoderm5.32e-10120
mesoderm-derived structure5.32e-10120
presumptive mesoderm5.32e-10120
connective tissue2.16e-0946
foregut8.01e-0980
respiratory system1.04e-0842
respiratory tract2.22e-0841
bone marrow9.22e-0816
bone element1.01e-0722
skeletal element1.01e-0722
skeletal system1.01e-0722
segment of respiratory tract4.15e-0727
organism subdivision9.70e-07150


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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