Personal tools

MCL coexpression mm9:3662: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 3: Line 3:
|coexpression_dpi_cluster_scores_median=0.063080965406114,0.731893554310267,0.723661591883141,0.875634827179008,0.955529089288445,0.416188620281207,0.33425785172849,-0.0334109748128948,0.056710017821378,0.144438635434589,-0.0496997105054405,-0.00111789519392469,0.101429716251979,0.0436610178723417,1.02152403286728,1.12813156081553,1.26091994517933,0.0450337699372336,0.0301029615002268,0.103797943240826,-0.0441235714078959,-0.200587036957544,-0.216202013491013,0.423624368987086,0.196196116282141,0.501270789010409,0.348484981901375,0.441083243188887,-0.34496405790381,0.0383709587507499,-0.220900318160419,1.01029486958293,1.16404709831555,1.13998237451167,0.469691721932646,0.476993597017884,0.565983227788807,-0.336102649076776,-0.930464412646124,-0.823366810970335,-0.66846475427267,-0.556432974563244,-0.635773225971263,-0.362840940826399,-0.358166911465114,-0.258907664822158,0.164432751979732,-0.642951832531444,-0.165387122904778,-0.353028792876033,-0.326821452174288,-0.0930579239161089,0.0863945867069605,0.302724141691036,0.186786221012159,0.188680754515902,-0.0865703124974023,0.223870859458437,-0.120060869871147,-0.0865703124974023,-0.179850767977297,0.178761649943852,-0.0865703124974023,-0.0924446776970288,-0.165282423966997,-0.229997290103256,-0.0865703124974023,-0.0865703124974023,-0.381482553747419,-0.506515897447895,-0.387658136111393,-0.0125514543962453,-0.136679967647249,-0.658903981951859,-0.570814713011708,-0.553136690948802,-0.192915727057479,-0.0343816083879542,-0.0865703124974023,-0.37303479722573,-0.297205377170973,-0.373611327986747,-0.0439515798508577,-0.223395007934454,-0.0865703124974023,-0.167834744872287,-0.136589780447899,-0.351139159925948,-0.148308009218346,-0.0254409902099797,0.536785375420169,0.233034718859424,0.138731558681581,0.481457184418721,0.306183938351543,0.25527205152324,0.242838359104646,-0.415450475096603,-0.644690286012109,-0.423389738146186,0.222063831778669,-0.453970211568945,-0.0865703124974023,-0.930464412646124,-0.229566134073799,-0.373386540764516,-0.303424122483669,0.308649536264253,-0.177580317690855,-0.0732073911123328,0.145609776128986,-0.0865703124974023,0.00355206740007553,-0.241059962650523,-0.0855510451209903,-0.114901865557775,-0.138696992029232,-0.22367336678587,0.816526525668195,0.14805213621163,0.673379019922137,0.524898905452744,-0.187215123272015,-0.134574371807279,-0.0865703124974023,0.317020696555797,0.0561301583170566,-0.21451793884037,0.0361261607656601,-0.200547813778059,-0.0865703124974023,-0.445264846679432,-0.0696668646009994,-0.0865703124974023,-0.122599032277877,-0.0870931142188824,-0.0865703124974023,0.444727487086907,-0.282244535751436,-0.083725953782854,-0.154000799541525,-0.276392205675197,-0.251744207823003,-0.0906140756854411,-0.29359670399763,-0.321064659677032,-0.230518856149155,-0.177904285193036,-0.431371464995834,-0.391591821942307,-0.369450509672121,-0.396756072389476,-0.369069978319034,-0.112764567180384,-0.232519438866096,-0.00773871765749483,-0.513925169490494,-0.558835433543239,-0.454917503227983,0.406330061267314,0.289616720486326,0.155291353653989,0.244420477512217,0.0736449610918009,0.087757493191795,0.0531211816808799,0.23004859957094,0.0208752086822173,0.0925603962346632,0.0669541555104727,0.0612123460775332,0.0609515310768427,-0.0865703124974023,-0.0587801099938131,0.100186925439997,-0.333696468210165,0.924226674452715,0.479767354584818,0.0288133204708816,0.201179278419094,0.221126714581156,0.252495446530392,0.189779382211883,0.159164998636589,0.375545488948711,0.336181913811538,0.291547550542526,0.389037647303702,0.410995782370719,0.205436493758693,0.326611633303765,0.254834065561546,-0.156835151569284,-0.0865703124974023,-0.0865703124974023,-0.0962432179661398,-0.0967708153395249,-0.057131411367756,-0.102081980806682,-0.28352501186817,-0.297301759068564,-0.333941271829349,0.395026182457065,0.878849206726102,0.924854196343567,0.914426529312155,0.986659252168437,0.905224816089278,0.721755441017394,0.733879410300469,0.397252534810042,0.456260786834989,0.255098818856229,0.23903212782137,0.124035861233171,0.0910117083120734,0.230737461810664,0.469592842381876,-0.072987946581106,-0.143977897395357,-0.172614258469521,-0.210832609661526,-0.269093817382451,-0.159246796778447,-0.121691303747044,0.0142820090684175,-0.0865703124974023,-0.0752772178287979,0.0301106782438655,-0.0666181307299589,-0.0865703124974023,-0.130621924903582,-0.402441185572747,-0.197393779351205,-0.167293231973833,-0.582050029132328,-0.082696027478728,-0.058503892690954,-0.177702879957127,-0.142193327416344,-0.519258814115077,-0.536071185746404,-0.660556208996543,-0.664812382140604,-0.346796302074056,-0.310465512191326,-0.471065751503764,-0.615055140680272,-0.430218752395342,-0.45347842167541,-0.0903444688282199,-0.0428524323084427,0.0358991586081709,-0.0893051147041771,0.976124250979829,0.258588311735177,0.313383237149091,0.17406416445318,0.356193357425726,0.340391671438942,0.211417845879359,0.259771364375807,0.357862814587096,0.325080329900165,0.630829241275965,0.511929495600399,-0.24532976466581,-0.343342861654392,-0.206620085809379,-0.0865703124974023,-0.205484734815353,-0.0865703124974023,-0.220813615068483,-0.0136853389500209,0.0227557268466594,0.297098514365102,0.0895625271944023,0.0372070368227713,-0.0865703124974023,-0.133856774666999,-0.11814425124664,-0.108923438869653,0.253792572244654,-0.0865703124974023,0.934747434552971,0.194083160533537,0.547867968845485,0.859086301026337,1.05294168449062,0.901429512288001,0.310121265039602,0.336062864541544,0.316808977191082,0.37722435004688,-0.0562791141118939,0.0616123215507835,0.135316370709792,0.0651600002739023,0.0708033748908472,0.0171406211983807,0.12349549795283,0.276812184590358,-0.55679786938128,-0.463968737717877,-0.311975047155948,-0.109813230714139,-0.115024475070997,0.0498050152277981,-0.00149177431382952,-0.040700921347874,0.227255971265271,0.173967883827766,-0.0865703124974023,-0.065167377147733,-0.195139274071954,0.0340916784703441,-0.00640389639162008,0.019352052121254,0.131123259560414,0.179103264994564,0.205930648005167,0.117814847459342,0.125838940710821,0.0429093554545219,0.0720152421043054,0.0140483216151868,0.0663215078355888,0.0955871345765971,0.08499562167229,-0.492026515351204,0.347851524123539,0.562747619107304,0.267473190458051,-0.161808615010609,-0.250946424766233,-0.0865703124974023,-0.284071071845384,0.306834786364165,-0.222114886594296,-0.552698802087696,-0.306355029558591,-0.282241037225915,-0.0865703124974023,-0.0865703124974023,-0.156477163537032,-0.0259352222001681,-0.140283740859349,0.154005355321347,-0.124491994536385,0.0014281491703616,0.0566391343174505,0.248517987452147,0.268337089312294,0.25579079510549,0.000588570747037415,-0.00521038036149828,0.0578799101104597,0.0772391837067201,0.063930857433617,-0.0115249619816928,0.0781220950739183,0.169511385741167,0.107861357355992,0.0882917260186176,0.104972038250777,0.0098711857605257,0.0624978356235639,0.117072334767865,-0.0410678833350122,0.0453534735778051,0.00630332210819071,0.0420023130434131,0.0933076277083529,0.0636759995196046,0.0488345850422294,-0.0509818685061539,0.0853346070806799,0.106872170949606,0.0804090536569447,0.11806186097856,0.062411888949642,0.0689417958829924,0.0640156955084353,-0.190371037404137,-0.0896631415177503,0,-0.264463558769782,0.104775347988187,0.0692501981956299
|coexpression_dpi_cluster_scores_median=0.063080965406114,0.731893554310267,0.723661591883141,0.875634827179008,0.955529089288445,0.416188620281207,0.33425785172849,-0.0334109748128948,0.056710017821378,0.144438635434589,-0.0496997105054405,-0.00111789519392469,0.101429716251979,0.0436610178723417,1.02152403286728,1.12813156081553,1.26091994517933,0.0450337699372336,0.0301029615002268,0.103797943240826,-0.0441235714078959,-0.200587036957544,-0.216202013491013,0.423624368987086,0.196196116282141,0.501270789010409,0.348484981901375,0.441083243188887,-0.34496405790381,0.0383709587507499,-0.220900318160419,1.01029486958293,1.16404709831555,1.13998237451167,0.469691721932646,0.476993597017884,0.565983227788807,-0.336102649076776,-0.930464412646124,-0.823366810970335,-0.66846475427267,-0.556432974563244,-0.635773225971263,-0.362840940826399,-0.358166911465114,-0.258907664822158,0.164432751979732,-0.642951832531444,-0.165387122904778,-0.353028792876033,-0.326821452174288,-0.0930579239161089,0.0863945867069605,0.302724141691036,0.186786221012159,0.188680754515902,-0.0865703124974023,0.223870859458437,-0.120060869871147,-0.0865703124974023,-0.179850767977297,0.178761649943852,-0.0865703124974023,-0.0924446776970288,-0.165282423966997,-0.229997290103256,-0.0865703124974023,-0.0865703124974023,-0.381482553747419,-0.506515897447895,-0.387658136111393,-0.0125514543962453,-0.136679967647249,-0.658903981951859,-0.570814713011708,-0.553136690948802,-0.192915727057479,-0.0343816083879542,-0.0865703124974023,-0.37303479722573,-0.297205377170973,-0.373611327986747,-0.0439515798508577,-0.223395007934454,-0.0865703124974023,-0.167834744872287,-0.136589780447899,-0.351139159925948,-0.148308009218346,-0.0254409902099797,0.536785375420169,0.233034718859424,0.138731558681581,0.481457184418721,0.306183938351543,0.25527205152324,0.242838359104646,-0.415450475096603,-0.644690286012109,-0.423389738146186,0.222063831778669,-0.453970211568945,-0.0865703124974023,-0.930464412646124,-0.229566134073799,-0.373386540764516,-0.303424122483669,0.308649536264253,-0.177580317690855,-0.0732073911123328,0.145609776128986,-0.0865703124974023,0.00355206740007553,-0.241059962650523,-0.0855510451209903,-0.114901865557775,-0.138696992029232,-0.22367336678587,0.816526525668195,0.14805213621163,0.673379019922137,0.524898905452744,-0.187215123272015,-0.134574371807279,-0.0865703124974023,0.317020696555797,0.0561301583170566,-0.21451793884037,0.0361261607656601,-0.200547813778059,-0.0865703124974023,-0.445264846679432,-0.0696668646009994,-0.0865703124974023,-0.122599032277877,-0.0870931142188824,-0.0865703124974023,0.444727487086907,-0.282244535751436,-0.083725953782854,-0.154000799541525,-0.276392205675197,-0.251744207823003,-0.0906140756854411,-0.29359670399763,-0.321064659677032,-0.230518856149155,-0.177904285193036,-0.431371464995834,-0.391591821942307,-0.369450509672121,-0.396756072389476,-0.369069978319034,-0.112764567180384,-0.232519438866096,-0.00773871765749483,-0.513925169490494,-0.558835433543239,-0.454917503227983,0.406330061267314,0.289616720486326,0.155291353653989,0.244420477512217,0.0736449610918009,0.087757493191795,0.0531211816808799,0.23004859957094,0.0208752086822173,0.0925603962346632,0.0669541555104727,0.0612123460775332,0.0609515310768427,-0.0865703124974023,-0.0587801099938131,0.100186925439997,-0.333696468210165,0.924226674452715,0.479767354584818,0.0288133204708816,0.201179278419094,0.221126714581156,0.252495446530392,0.189779382211883,0.159164998636589,0.375545488948711,0.336181913811538,0.291547550542526,0.389037647303702,0.410995782370719,0.205436493758693,0.326611633303765,0.254834065561546,-0.156835151569284,-0.0865703124974023,-0.0865703124974023,-0.0962432179661398,-0.0967708153395249,-0.057131411367756,-0.102081980806682,-0.28352501186817,-0.297301759068564,-0.333941271829349,0.395026182457065,0.878849206726102,0.924854196343567,0.914426529312155,0.986659252168437,0.905224816089278,0.721755441017394,0.733879410300469,0.397252534810042,0.456260786834989,0.255098818856229,0.23903212782137,0.124035861233171,0.0910117083120734,0.230737461810664,0.469592842381876,-0.072987946581106,-0.143977897395357,-0.172614258469521,-0.210832609661526,-0.269093817382451,-0.159246796778447,-0.121691303747044,0.0142820090684175,-0.0865703124974023,-0.0752772178287979,0.0301106782438655,-0.0666181307299589,-0.0865703124974023,-0.130621924903582,-0.402441185572747,-0.197393779351205,-0.167293231973833,-0.582050029132328,-0.082696027478728,-0.058503892690954,-0.177702879957127,-0.142193327416344,-0.519258814115077,-0.536071185746404,-0.660556208996543,-0.664812382140604,-0.346796302074056,-0.310465512191326,-0.471065751503764,-0.615055140680272,-0.430218752395342,-0.45347842167541,-0.0903444688282199,-0.0428524323084427,0.0358991586081709,-0.0893051147041771,0.976124250979829,0.258588311735177,0.313383237149091,0.17406416445318,0.356193357425726,0.340391671438942,0.211417845879359,0.259771364375807,0.357862814587096,0.325080329900165,0.630829241275965,0.511929495600399,-0.24532976466581,-0.343342861654392,-0.206620085809379,-0.0865703124974023,-0.205484734815353,-0.0865703124974023,-0.220813615068483,-0.0136853389500209,0.0227557268466594,0.297098514365102,0.0895625271944023,0.0372070368227713,-0.0865703124974023,-0.133856774666999,-0.11814425124664,-0.108923438869653,0.253792572244654,-0.0865703124974023,0.934747434552971,0.194083160533537,0.547867968845485,0.859086301026337,1.05294168449062,0.901429512288001,0.310121265039602,0.336062864541544,0.316808977191082,0.37722435004688,-0.0562791141118939,0.0616123215507835,0.135316370709792,0.0651600002739023,0.0708033748908472,0.0171406211983807,0.12349549795283,0.276812184590358,-0.55679786938128,-0.463968737717877,-0.311975047155948,-0.109813230714139,-0.115024475070997,0.0498050152277981,-0.00149177431382952,-0.040700921347874,0.227255971265271,0.173967883827766,-0.0865703124974023,-0.065167377147733,-0.195139274071954,0.0340916784703441,-0.00640389639162008,0.019352052121254,0.131123259560414,0.179103264994564,0.205930648005167,0.117814847459342,0.125838940710821,0.0429093554545219,0.0720152421043054,0.0140483216151868,0.0663215078355888,0.0955871345765971,0.08499562167229,-0.492026515351204,0.347851524123539,0.562747619107304,0.267473190458051,-0.161808615010609,-0.250946424766233,-0.0865703124974023,-0.284071071845384,0.306834786364165,-0.222114886594296,-0.552698802087696,-0.306355029558591,-0.282241037225915,-0.0865703124974023,-0.0865703124974023,-0.156477163537032,-0.0259352222001681,-0.140283740859349,0.154005355321347,-0.124491994536385,0.0014281491703616,0.0566391343174505,0.248517987452147,0.268337089312294,0.25579079510549,0.000588570747037415,-0.00521038036149828,0.0578799101104597,0.0772391837067201,0.063930857433617,-0.0115249619816928,0.0781220950739183,0.169511385741167,0.107861357355992,0.0882917260186176,0.104972038250777,0.0098711857605257,0.0624978356235639,0.117072334767865,-0.0410678833350122,0.0453534735778051,0.00630332210819071,0.0420023130434131,0.0933076277083529,0.0636759995196046,0.0488345850422294,-0.0509818685061539,0.0853346070806799,0.106872170949606,0.0804090536569447,0.11806186097856,0.062411888949642,0.0689417958829924,0.0640156955084353,-0.190371037404137,-0.0896631415177503,0,-0.264463558769782,0.104775347988187,0.0692501981956299
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0004119!5.33e-12!118;UBERON:0000925!5.33e-12!118;UBERON:0006595!5.33e-12!118;UBERON:0001007!1.10e-11!116;UBERON:0001555!1.10e-11!116;UBERON:0007026!1.10e-11!116;UBERON:0003929!1.76e-11!55;UBERON:0004921!4.63e-11!114;UBERON:0005409!5.79e-11!47;UBERON:0002107!7.90e-10!22;UBERON:0007499!7.90e-10!22;UBERON:0006925!7.90e-10!22;UBERON:0009497!7.90e-10!22;UBERON:0000015!7.90e-10!22;UBERON:0002423!7.90e-10!22;UBERON:0006235!7.90e-10!22;UBERON:0008835!7.90e-10!22;UBERON:0003894!7.90e-10!22;UBERON:0004161!7.90e-10!22;UBERON:0008836!7.90e-10!22;UBERON:0009854!5.32e-09!23;UBERON:0009856!5.32e-09!23;UBERON:0000160!1.96e-08!31;UBERON:0000490!4.20e-08!66;UBERON:0002075!5.19e-08!19;UBERON:0005911!1.56e-07!69;UBERON:0004923!1.62e-07!24;UBERON:0000949!2.40e-07!72;UBERON:0003914!5.11e-07!47;UBERON:0002365!5.71e-07!25;UBERON:0002330!5.71e-07!25
}}
}}

Revision as of 20:25, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr8:124806017..124806040,+p2@Zfpm1
Mm9::chr8:124806048..124806094,+p1@Zfpm1
Mm9::chr8:124806111..124806122,+p3@Zfpm1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
endoderm-derived structure5.33e-12118
endoderm5.33e-12118
presumptive endoderm5.33e-12118
digestive system1.10e-11116
digestive tract1.10e-11116
primitive gut1.10e-11116
gut epithelium1.76e-1155
subdivision of digestive tract4.63e-11114
gastrointestinal system5.79e-1147
liver7.90e-1022
epithelial sac7.90e-1022
digestive gland7.90e-1022
epithelium of foregut-midgut junction7.90e-1022
anatomical boundary7.90e-1022
hepatobiliary system7.90e-1022
foregut-midgut junction7.90e-1022
hepatic diverticulum7.90e-1022
liver primordium7.90e-1022
septum transversum7.90e-1022
liver bud7.90e-1022
digestive tract diverticulum5.32e-0923
sac5.32e-0923
intestine1.96e-0831
unilaminar epithelium4.20e-0866
viscus5.19e-0819
endo-epithelium1.56e-0769
organ component layer1.62e-0724
endocrine system2.40e-0772
epithelial tube5.11e-0747
exocrine gland5.71e-0725
exocrine system5.71e-0725


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:3662&oldid=2156024"