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MCL coexpression mm9:163: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0004119!2.17e-15!118;UBERON:0000925!2.17e-15!118;UBERON:0006595!2.17e-15!118;UBERON:0001007!1.60e-14!116;UBERON:0001555!1.60e-14!116;UBERON:0007026!1.60e-14!116;UBERON:0005409!1.33e-13!47;UBERON:0004921!1.66e-13!114;UBERON:0000160!1.83e-12!31;UBERON:0004923!2.05e-11!24;UBERON:0000344!5.16e-09!15;UBERON:0001242!7.48e-08!13;UBERON:0000060!7.48e-08!13;UBERON:0001262!7.48e-08!13;UBERON:0004786!7.48e-08!13
|ontology_enrichment_uberon=UBERON:0004119!2.17e-15!118;UBERON:0000925!2.17e-15!118;UBERON:0006595!2.17e-15!118;UBERON:0001007!1.60e-14!116;UBERON:0001555!1.60e-14!116;UBERON:0007026!1.60e-14!116;UBERON:0005409!1.33e-13!47;UBERON:0004921!1.66e-13!114;UBERON:0000160!1.83e-12!31;UBERON:0004923!2.05e-11!24;UBERON:0000344!5.16e-09!15;UBERON:0001242!7.48e-08!13;UBERON:0000060!7.48e-08!13;UBERON:0001262!7.48e-08!13;UBERON:0004786!7.48e-08!13
|tfbs_overrepresentation_for_novel_motifs=1.12984,1.57093,1.30246,0.0476067,0.00422895,0.0542312,0.789118,0.0201398,0.170462,3.88975,1.33159,0.0997278,0.480766,0.520639,0.00575909,0,1.05097,0.167479,1.36192,0.352035,0.0145339,0.883525,2.10955,0.180102,0.505722,0.323603,0.0558117,1.5888,0.165965,1.19654,0.801188,0.429896,0.796234,0.272453,2.64764,0.804139,3.35533,1.08156,0.44159,0.628705,0.17514,2.42589,0.0471527,0.00596766,2.01967,0.678106,1.24085,1.27901,0.0372462,0.170922,0.998282,1.02138,0.447481,0.632916,0.233728,0.537905,0.0385933,0.434753,0.0848863,0.532956,0.803006,0.682115,0.121402,0.570293,0.56522,4.29837,0.329653,0.616867,0.126144,1.2284,3.18374,0.0951933,1.78169,0.256208,2.42504,3.19138,0.272151,0.451021,0.119914,0.38165,0.00885456,0.664753,0.167959,0.076893,1.62689,5.63408,0.944255,0.12008,0.481135,0.763142,0.382871,0.544637,0.145735,0.107111,1.01469,0.015554,0.0426963,0.8837,0.817986,0.180543,0.0119157,0.847444,0.606582,0.0833891,0.282384,0.819709,1.18013,0.185164,1.12529,2.98327,0.544025,0.212331,0.384939,0.404069,0.388387,0.0421833,2.67421,0.733695,1.56096,0.0321611,0.259901,0.070507,0.139774,0.204057,0.431518,0.385979,0.274938,0.86178,0.328524,0.685414,0.200563,0.987611,0.306767,0.312955,0.40544,0.201993,0.0998918,0.162328,0.366944,1.11117,0.733971,0.33317,0.0380209,0.44397,0.578945,0.161235,0.477804,1.07297,0.101978,2.44793,1.22939,4.34334,0.223362,1.16207,0.0326228,0.278572,0.0418142,0.246349,0.196573,2.36073,0.374299,0.536197,0.386551,0.536421,0.0790063,0.126395,0.733002,0.0986539,2.35012
}}
}}

Revision as of 17:54, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:41238915..41238926,-p@chr10:41238915..41238926
-
Mm9::chr10:89148964..89148989,-p2@Scyl2
Mm9::chr11:101163543..101163605,-p1@Becn1
Mm9::chr11:75275126..75275143,+p2@ENSMUST00000134345
Mm9::chr11:75275168..75275188,+p1@ENSMUST00000134345
Mm9::chr12:111685422..111685440,+p3@Ppp2r5c
Mm9::chr12:70782782..70782856,-p2@Sos2
Mm9::chr12:78063146..78063159,-p2@Max
Mm9::chr12:78063165..78063227,-p1@Max
Mm9::chr13:34094244..34094292,+p1@Ripk1
Mm9::chr13:34094299..34094310,+p2@Ripk1
Mm9::chr13:55423258..55423272,-p2@Rab24
Mm9::chr13:55423289..55423335,-p1@Rab24
Mm9::chr13:65214271..65214295,-p2@Hiatl1
Mm9::chr13:65214302..65214312,-p4@Hiatl1
Mm9::chr13:97312682..97312730,+p1@Col4a3bp
Mm9::chr14:31439382..31439406,-p1@Prkcd
Mm9::chr14:56503797..56503847,+p1@Khnyn
Mm9::chr14:68551569..68551642,-p1@Dock5
Mm9::chr15:102289624..102289651,+p1@Prr13
Mm9::chr15:73342989..73343037,+p1@Dennd3
Mm9::chr15:81415768..81415811,+p1@Ep300
Mm9::chr16:57231547..57231622,-p2@Tbc1d23
Mm9::chr17:34974027..34974111,+p1@Dom3z
Mm9::chr18:12287251..12287316,+p1@Riok3
Mm9::chr18:78033296..78033349,+p1@Pstpip2
Mm9::chr19:4397052..4397098,-p1@Kdm2a
Mm9::chr19:53384910..53384937,+p3@Mxi1
Mm9::chr19:53384985..53385042,+p1@Mxi1
Mm9::chr19:53385060..53385069,+p6@Mxi1
Mm9::chr19:6015152..6015198,-p1@Capn1
Mm9::chr19:6241699..6241734,+p1@Atg2a
Mm9::chr1:161162430..161162451,+p2@LOC100504800
p2@Rfwd2
Mm9::chr1:163806719..163806738,-p5@AI848100
Mm9::chr1:75207407..75207485,+p1@Stk16
Mm9::chr2:164630324..164630337,-p1@Acot8
Mm9::chr2:60221292..60221347,-p1@Ly75
Mm9::chr2:68699490..68699567,+p1@Lass6
Mm9::chr3:107948998..107949068,-p1@Gnai3
Mm9::chr3:108925918..108925977,+p3@Slc25a24
Mm9::chr3:157609959..157610005,+p3@Ankrd13c
Mm9::chr3:16083208..16083280,+p1@Ythdf3
Mm9::chr3:21975566..21975603,+p3@Tbl1xr1
Mm9::chr3:51465131..51465172,+p2@Mgst2
Mm9::chr3:9004422..9004428,-p7@Tpd52
Mm9::chr3:9004472..9004515,-p1@Tpd52
Mm9::chr3:9004686..9004750,-p2@Tpd52
Mm9::chr4:10934782..10934802,-p2@Plekhf2
Mm9::chr4:116393525..116393609,+p1@Tesk2
Mm9::chr4:126431114..126431124,+p3@AU040320
Mm9::chr4:154999040..154999049,+p4@Cdk11b
Mm9::chr4:41296061..41296097,+p1@Ubap1
Mm9::chr5:101275436..101275468,+p3@Agpat9
Mm9::chr5:144288845..144288878,-p1@Rac1
Mm9::chr5:93696588..93696631,+p1@Ccng2
Mm9::chr6:86619104..86619119,-p1@Mxd1
Mm9::chr6:86619130..86619158,-p2@Mxd1
Mm9::chr7:128178056..128178094,+p2@Mettl9
Mm9::chr7:134351937..134352018,-p1@Tbc1d10b
Mm9::chr7:26004842..26004899,-p1@Dedd2
Mm9::chr8:112089592..112089603,-p4@Dhx38
Mm9::chr8:125778192..125778217,+p2@Zfp276
Mm9::chr8:75016491..75016561,-p1@Slc35e1
Mm9::chr9:108894027..108894047,+p1@Pfkfb4
Mm9::chr9:108984886..108984928,-p1@Ccdc72
p1@Gm15431
Mm9::chr9:123022249..123022274,-p2@Zdhhc3
Mm9::chrX:19941681..19941742,+p1@Rp2h


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
endoderm-derived structure2.17e-15118
endoderm2.17e-15118
presumptive endoderm2.17e-15118
digestive system1.60e-14116
digestive tract1.60e-14116
primitive gut1.60e-14116
gastrointestinal system1.33e-1347
subdivision of digestive tract1.66e-13114
intestine1.83e-1231
organ component layer2.05e-1124
mucosa5.16e-0915
intestinal mucosa7.48e-0813
anatomical wall7.48e-0813
wall of intestine7.48e-0813
gastrointestinal system mucosa7.48e-0813


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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