FFCP PHASE1:Mm9::chr6:83391668..83391678,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=194388|HGNC=|UniProt=Q8BG87|association_with_transcript=0bp_to_ENSMUST00000056191,ENSMUST00000089622,NM_183138,uc009cni.2,uc009cnl.1_5end|description=CAGE_peak_3_at_Tet3_5end|id=chr6:83391668..83391678,-|ontology_enrichment_celltype=CL:0000117!2.99e-10!23;CL:0000337!2.99e-10!23;CL:0000540!1.57e-07!33;CL:0000047!1.57e-07!33;CL:0000031!1.57e-07!33;CL:0000404!1.57e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,7.39e-18,23;CL:0000337,7.39e-18,23;CL:0000540,5.64e-12,33;CL:0000047,5.64e-12,33;CL:0000031,5.64e-12,33;CL:0000404,5.64e-12,33;CL:0002319,6.57e-10,43;CL:0000221,1.55e-09,44;CL:0000133,1.55e-09,44;CL:0000393,3.40e-09,39;CL:0000211,3.40e-09,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!3.04e-16!102;UBERON:0000924!3.04e-16!102;UBERON:0006601!3.04e-16!102;UBERON:0001017!1.89e-13!73;UBERON:0005743!1.89e-13!73;UBERON:0000073!1.26e-12!75;UBERON:0001016!1.26e-12!75;UBERON:0002346!7.27e-12!71;UBERON:0003075!7.27e-12!71;UBERON:0007284!7.27e-12!71;UBERON:0000033!2.11e-11!63;UBERON:0001049!2.74e-11!52;UBERON:0005068!2.74e-11!52;UBERON:0006241!2.74e-11!52;UBERON:0007135!2.74e-11!52;UBERON:0003056!1.77e-10!49;UBERON:0000955!9.29e-10!50;UBERON:0006238!9.29e-10!50;UBERON:0002616!3.16e-09!49;UBERON:0002020!1.10e-08!34;UBERON:0003080!1.92e-08!40;UBERON:0002780!3.36e-08!39;UBERON:0001890!3.36e-08!39;UBERON:0006240!3.36e-08!39;UBERON:0007811!7.41e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.37e-19,95;UBERON:0000924,2.37e-19,95;UBERON:0006601,2.37e-19,95;UBERON:0001017,5.59e-18,73;UBERON:0001016,3.55e-17,75;UBERON:0000073,1.30e-15,54;UBERON:0002346,1.64e-15,64;UBERON:0003075,1.64e-15,64;UBERON:0007284,1.64e-15,64;UBERON:0001049,1.46e-14,52;UBERON:0005068,1.46e-14,52;UBERON:0006241,1.46e-14,52;UBERON:0007135,1.46e-14,52;UBERON:0010371,1.79e-14,73;UBERON:0002020,1.01e-12,34;UBERON:0000955,2.34e-10,47;UBERON:0006238,2.34e-10,47;UBERON:0003056,3.47e-10,49;UBERON:0002616,1.65e-09,46;UBERON:0010314,3.33e-09,92;UBERON:0002780,1.58e-08,39;UBERON:0001890,1.58e-08,39;UBERON:0006240,1.58e-08,39;UBERON:0003076,1.95e-08,12;UBERON:0003057,1.95e-08,12;UBERON:0002240,2.05e-08,6;UBERON:0005174,2.05e-08,6;UBERON:0001137,2.05e-08,6;UBERON:0003080,3.58e-08,40;UBERON:0003528,4.38e-08,29;UBERON:0002791,4.38e-08,29;UBERON:0001893,4.38e-08,29;UBERON:0001948,1.27e-07,5;UBERON:0002315,1.27e-07,5;UBERON:0002420,4.68e-07,8;UBERON:0007245,4.68e-07,8;UBERON:0010009,4.68e-07,8;UBERON:0010011,4.68e-07,8;UBERON:0000454,4.68e-07,8|phase1_expression=0.480446541314382,0.348975407639361,0.454999239389536,0.60492842261366,2.00358291978539,0,0,0.645616617207881,0,0.234064526321993,0,0.0797721589953364,0.513602189793617,0.262261207256992,0,0.202475267389826,0,0.157731082679119,0.137114433605739,0,0.595303031057488,0.0992909512008853,0,0.159992422793407,0,0,0,0,0.190023419456374,0.252030129759931,0,0.635030673459631,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0.125896817975577,0.202753862439029,0.183546752161682,0,0,0.439372365468944,0.58328969722285,0.279972843250725,2.87505128729943,0,0.725362142011344,0.672187598284928,0.514518872071894,0.286533439938757,0.515672092277442,1.82084814773638,2.64495489636016,2.53532561402472,0.338844532069132,0.889294796111139,0,0,0,0.599200221036809,1.15265491596466,0.829516898467821,1.08004750665353,0.630974884054146,3.14216082844184,1.32521124570968,1.10241719293459,1.53352753629178,2.75765635983006,1.10115880999389,1.0214987046815,1.0752457327937,1.45074916503213,2.01272815925301,1.56274011167028,1.95428099300967,0,1.06958773443767,2.65165726926301,1.99320353118744,2.98239113320481,0.075726193333184,0.302286240427142,0.289864488701678,0,0,0.539703191637817,0,0.448026887097336,0.280888840263504,0.511290967734173,0,0,0.422530259330042,0,2.54805239706646,0,0,0,0,0.79928715803342,0,0.29688427812965,1.04091196059682,0.913396434936424,0,0.301445281105245,0.705532242814229,0.753999547978053,0.494389935468748,0.722996784599558,0,0.647067399789637,0.883366073841574,0.484875253135222,0,2.92780797011547,5.23616767033638,0.510914110417183,0.239630249011841,0,0,0.898743836428936,1.37250180845588,1.50785222535437,0.869121600961382,0.767146371990992,1.24672826735736,0.811206315338788,0.81471491080253,0.622034853050465,0.758168275301024,1.26265113531884,0.520481771850815,0.459804208866946,1.0803727788321,0.452114453507145,1.97305847538851,0.896796041993948,1.68663104207512,1.81092359517311,0,0.378212160335639,0.703804496655795,0.657587197282725,0.556094498451196,0.696504333044333,0.823128545631774,0,0,0,0,0.621377317606506,0.469052119962192,0.180062061461015,0,0.196764231747404,0.308534225774757,0.232533944750408,0.536546802799238,0.700592054203017,0.658239399653922,0.492502392237286,0.810688095458557,0.438599962275997,0.219550115291051,0.402619256281115,0.420579897128254,0.514523061896422,1.32167513193519,0,0.639864751605702,0.464473343720877,1.03093969057675,1.00841762311671,0.22237804384487,0.380451252225118,1.42358718463353,0.494096864172033,0.5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| ||
|EntrezGene=194388 | |||
|HGNC= | |||
|UniProt=Q8BG87 | |||
|association_with_transcript=0bp_to_ENSMUST00000056191,ENSMUST00000089622,NM_183138,uc009cni.2,uc009cnl.1_5end | |||
|description=CAGE_peak_3_at_Tet3_5end | |||
|id=chr6:83391668..83391678,- | |||
|ontology_enrichment_celltype=CL:0000117!2.99e-10!23;CL:0000337!2.99e-10!23;CL:0000540!1.57e-07!33;CL:0000047!1.57e-07!33;CL:0000031!1.57e-07!33;CL:0000404!1.57e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.39e-18,23;CL:0000337,7.39e-18,23;CL:0000540,5.64e-12,33;CL:0000047,5.64e-12,33;CL:0000031,5.64e-12,33;CL:0000404,5.64e-12,33;CL:0002319,6.57e-10,43;CL:0000221,1.55e-09,44;CL:0000133,1.55e-09,44;CL:0000393,3.40e-09,39;CL:0000211,3.40e-09,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!3.04e-16!102;UBERON:0000924!3.04e-16!102;UBERON:0006601!3.04e-16!102;UBERON:0001017!1.89e-13!73;UBERON:0005743!1.89e-13!73;UBERON:0000073!1.26e-12!75;UBERON:0001016!1.26e-12!75;UBERON:0002346!7.27e-12!71;UBERON:0003075!7.27e-12!71;UBERON:0007284!7.27e-12!71;UBERON:0000033!2.11e-11!63;UBERON:0001049!2.74e-11!52;UBERON:0005068!2.74e-11!52;UBERON:0006241!2.74e-11!52;UBERON:0007135!2.74e-11!52;UBERON:0003056!1.77e-10!49;UBERON:0000955!9.29e-10!50;UBERON:0006238!9.29e-10!50;UBERON:0002616!3.16e-09!49;UBERON:0002020!1.10e-08!34;UBERON:0003080!1.92e-08!40;UBERON:0002780!3.36e-08!39;UBERON:0001890!3.36e-08!39;UBERON:0006240!3.36e-08!39;UBERON:0007811!7.41e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.37e-19,95;UBERON:0000924,2.37e-19,95;UBERON:0006601,2.37e-19,95;UBERON:0001017,5.59e-18,73;UBERON:0001016,3.55e-17,75;UBERON:0000073,1.30e-15,54;UBERON:0002346,1.64e-15,64;UBERON:0003075,1.64e-15,64;UBERON:0007284,1.64e-15,64;UBERON:0001049,1.46e-14,52;UBERON:0005068,1.46e-14,52;UBERON:0006241,1.46e-14,52;UBERON:0007135,1.46e-14,52;UBERON:0010371,1.79e-14,73;UBERON:0002020,1.01e-12,34;UBERON:0000955,2.34e-10,47;UBERON:0006238,2.34e-10,47;UBERON:0003056,3.47e-10,49;UBERON:0002616,1.65e-09,46;UBERON:0010314,3.33e-09,92;UBERON:0002780,1.58e-08,39;UBERON:0001890,1.58e-08,39;UBERON:0006240,1.58e-08,39;UBERON:0003076,1.95e-08,12;UBERON:0003057,1.95e-08,12;UBERON:0002240,2.05e-08,6;UBERON:0005174,2.05e-08,6;UBERON:0001137,2.05e-08,6;UBERON:0003080,3.58e-08,40;UBERON:0003528,4.38e-08,29;UBERON:0002791,4.38e-08,29;UBERON:0001893,4.38e-08,29;UBERON:0001948,1.27e-07,5;UBERON:0002315,1.27e-07,5;UBERON:0002420,4.68e-07,8;UBERON:0007245,4.68e-07,8;UBERON:0010009,4.68e-07,8;UBERON:0010011,4.68e-07,8;UBERON:0000454,4.68e-07,8 | |||
|phase1_expression=0.480446541314382,0.348975407639361,0.454999239389536,0.60492842261366,2.00358291978539,0,0,0.645616617207881,0,0.234064526321993,0,0.0797721589953364,0.513602189793617,0.262261207256992,0,0.202475267389826,0,0.157731082679119,0.137114433605739,0,0.595303031057488,0.0992909512008853,0,0.159992422793407,0,0,0,0,0.190023419456374,0.252030129759931,0,0.635030673459631,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0.125896817975577,0.202753862439029,0.183546752161682,0,0,0.439372365468944,0.58328969722285,0.279972843250725,2.87505128729943,0,0.725362142011344,0.672187598284928,0.514518872071894,0.286533439938757,0.515672092277442,1.82084814773638,2.64495489636016,2.53532561402472,0.338844532069132,0.889294796111139,0,0,0,0.599200221036809,1.15265491596466,0.829516898467821,1.08004750665353,0.630974884054146,3.14216082844184,1.32521124570968,1.10241719293459,1.53352753629178,2.75765635983006,1.10115880999389,1.0214987046815,1.0752457327937,1.45074916503213,2.01272815925301,1.56274011167028,1.95428099300967,0,1.06958773443767,2.65165726926301,1.99320353118744,2.98239113320481,0.075726193333184,0.302286240427142,0.289864488701678,0,0,0.539703191637817,0,0.448026887097336,0.280888840263504,0.511290967734173,0,0,0.422530259330042,0,2.54805239706646,0,0,0,0,0.79928715803342,0,0.29688427812965,1.04091196059682,0.913396434936424,0,0.301445281105245,0.705532242814229,0.753999547978053,0.494389935468748,0.722996784599558,0,0.647067399789637,0.883366073841574,0.484875253135222,0,2.92780797011547,5.23616767033638,0.510914110417183,0.239630249011841,0,0,0.898743836428936,1.37250180845588,1.50785222535437,0.869121600961382,0.767146371990992,1.24672826735736,0.811206315338788,0.81471491080253,0.622034853050465,0.758168275301024,1.26265113531884,0.520481771850815,0.459804208866946,1.0803727788321,0.452114453507145,1.97305847538851,0.896796041993948,1.68663104207512,1.81092359517311,0,0.378212160335639,0.703804496655795,0.657587197282725,0.556094498451196,0.696504333044333,0.823128545631774,0,0,0,0,0.621377317606506,0.469052119962192,0.180062061461015,0,0.196764231747404,0.308534225774757,0.232533944750408,0.536546802799238,0.700592054203017,0.658239399653922,0.492502392237286,0.810688095458557,0.438599962275997,0.219550115291051,0.402619256281115,0.420579897128254,0.514523061896422,1.32167513193519,0,0.639864751605702,0.464473343720877,1.03093969057675,1.00841762311671,0.22237804384487,0.380451252225118,1.42358718463353,0.494096864172033,0.502670417600539,0.397912944082302,1.16978452271472,0,0.432276099749388,0.398282546508734,1.13800740571849,0.342745537829186,1.1270773567308,0.814605311381257,0.775809948670503,0.771494018793504,0.758838445491087,0.738050739898011,0.31399745568275,0.616985819609003,0.592905254174298,0.166845105716094,0.196558995113203,0.224862112384854,0.405720242777006,0.72353147925725,0,0,0.324270453550071,0,0,1.11642284300551,0.936113019343682,0.252578877947112,0,0,0.369506380333209,0.757965647081939,0.162964976442026,0.169745085775188,0.938760993154008,1.00503754465089,0.238043640886014,0.195133647857799,0.630540576424764,0.664394068946325,0.797273843287435,0,0.345369963731791,1.15719246865209,0,0,0.983528546038072,0.827810238914197,0.321101179975584,1.40654023910644,0,0.252470927204373,0,0.390438744296638,0.430846795465598,0.477937595905104,0.222798674082394,0.283076530788832,0.404810701674894,0.876767573733936,1.58115111178609,2.57057053137446,0.283880170416537,0.35613120733451,0.325773918707152,0.164970122972535,1.32745138339963,0.242780636154981,0.302323556964751,0,0.295301892880773,0.307435147943927,0.258428293168221,0.363533729477506,0.356497378384721,0.632073515871632,0,0,2.04263763452273,0.36012218806262,0.905510786479282,1.07168517515796,2.30542303734956,0.713475270408282,0.822745103010605,0.608929898229199,0.469343416127421,0.42366414172764,0,0.8244312647074,0.322928853391811,1.5078231232039,0.954978752025092,1.64140899745061,0.874442509889552,1.29797711407357,0.341741761595705,0.206386867963223,0.185194527369712,0.753473828018764,0.683471138605126,0.228778173206523,0.169978429993855,0,0.138199973804424,0,0.316335993581135,0.813277868507395,0.540026704109006,1.04544148007234,0.436725127492355,0.134864346384821,0.661227645802687,0.26175594198403,0.648074866458964,0,0,0.448549638131936,0.496375471371293,0.388902376688095,0.258319646955462,0.337912250981556,0.821500670520278,1.69265700297135,0.629156066554265,0.241584120826006,0,0.632022241256357,0.202725215290164,0.205421914329655,0.25984164595559,0.895133478337407,1.19208812868759,0.721172697119813,0.295379054349154,0.201932899896295,0.533447646584999,0.100826185136841,0.292373642219257,0.288635524920988,0.233753804363138,2.49403421976732,0.443971906748129,0.269141569828427,0.167884616364078,0.772758376128762,0,0.549454872801795,1.2862102744744,0.501572104035363,0.564751842617067,0.920650473014354,1.14579102687879,1.71853182343688,0,0,1.35004500046361,2.2516060161211,1.35942722695261,1.03552062350364,0.103787347584177,0,0.5122008172624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| |||
|short_description=p3@Tet3 | |||
}} |
Revision as of 10:44, 14 September 2013
Short description: | p3@Tet3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Tet3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000056191, ENSMUST00000089622, NM_183138, uc009cni.2, uc009cnl.1_5end |
EntrezGene: | Tet3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.39e-18 | 23 |
neuroblast (sensu Vertebrata) | 7.39e-18 | 23 |
neuron | 5.64e-12 | 33 |
neuronal stem cell | 5.64e-12 | 33 |
neuroblast | 5.64e-12 | 33 |
electrically signaling cell | 5.64e-12 | 33 |
neural cell | 6.57e-10 | 43 |
ectodermal cell | 1.55e-09 | 44 |
neurectodermal cell | 1.55e-09 | 44 |
electrically responsive cell | 3.40e-09 | 39 |
electrically active cell | 3.40e-09 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.