FFCP PHASE1:Mm9::chr4:137882149..137882220,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=68943|HGNC=|MCL_coexpression_id=1132|UniProt=A2AM78,Q99MQ3|association_with_transcript=0bp_to_ENSMUST00000105817,NM_026880,uc008vku.1,uc008vkv.1_5end|description=CAGE_peak_1_at_Pink1_5end|id=chr4:137882149..137882220,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004111!4.44e-13!122;UBERON:0000025!1.62e-11!114;UBERON:0000955!1.32e-10!50;UBERON:0006238!1.32e-10!50;UBERON:0001017!1.88e-10!73;UBERON:0005743!1.88e-10!73;UBERON:0000033!2.43e-10!63;UBERON:0002616!3.49e-10!49;UBERON:0001049!5.05e-10!52;UBERON:0005068!5.05e-10!52;UBERON:0006241!5.05e-10!52;UBERON:0007135!5.05e-10!52;UBERON:0004121!7.95e-10!102;UBERON:0000924!7.95e-10!102;UBERON:0006601!7.95e-10!102;UBERON:0000073!2.57e-09!75;UBERON:0001016!2.57e-09!75;UBERON:0007023!4.88e-09!51;UBERON:0002020!3.50e-08!34;UBERON:0000062!5.70e-08!269;UBERON:0002346!1.01e-07!71;UBERON:0003075!1.01e-07!71;UBERON:0007284!1.01e-07!71;UBERON:0002791!1.72e-07!29;UBERON:0003528!1.72e-07!29;UBERON:0001893!1.72e-07!29;UBERON:0000480!9.45e-07!308;UBERON:0000467!9.45e-07!308|ontology_enrichment_uberon_v019_2=UBERON:0004111,4.44e-13,122;UBERON:0000025,1.62e-11,114;UBERON:0000073,5.65e-11,54;UBERON:0001017,1.88e-10,73;UBERON:0001049,5.05e-10,52;UBERON:0005068,5.05e-10,52;UBERON:0006241,5.05e-10,52;UBERON:0007135,5.05e-10,52;UBERON:0004121,7.13e-10,95;UBERON:0000924,7.13e-10,95;UBERON:0006601,7.13e-10,95;UBERON:0010314,2.38e-09,92;UBERON:0001016,2.57e-09,75;UBERON:0000955,4.16e-09,47;UBERON:0006238,4.16e-09,47;UBERON:0007023,4.88e-09,51;UBERON:0002616,1.05e-08,46;UBERON:0002020,3.50e-08,34;UBERON:0010371,4.51e-08,73;UBERON:0002346,6.89e-08,64;UBERON:0003075,6.89e-08,64;UBERON:0007284,6.89e-08,64;UBERON:0003528,1.72e-07,29;UBERON:0002791,1.72e-07,29;UBERON:0001893,1.72e-07,29|phase1_expression=94.007373250514,202.05676102319,248.429584706687,244.693546947225,305.045499537325,68.3268636681392,61.4401244766233,39.8991069434471,21.6814632113567,11.4691617897777,8.21846247482424,3.66951931378547,63.1730693446149,35.055581370018,60.6259766504506,74.9158489342356,80.4496159847369,45.2688207289071,56.6282610791701,54.3218754301479,171.107099783952,43.3901456747869,31.8663742749501,73.4365220621737,76.852109157502,164.804573701011,125.78250287845,94.1609286837335,135.676721491851,121.226492414527,51.8849394933413,14.6057054895715,14.7615549020297,31.6963362030877,45.6385559207014,43.221007793208,44.3047503089341,139.789564666127,81.2588758304752,43.4524707498253,105.881667845583,93.5772314393071,70.8845115425484,63.451996259691,56.8724584141477,37.8106309453064,115.011527619162,114.899257412495,168.059929791871,190.541301092798,62.153971201661,113.564525848328,63.5896076958821,93.5717163194634,88.0565753753256,47.0784767945783,87.6792326212596,99.0090417172689,103.383711499254,103.682231937318,104.58218157852,47.7770790217476,39.1289710288901,92.6896708799841,95.9200371689965,88.0995342533164,205.226075705107,382.681432100268,57.4440452188966,70.3380938708108,64.1491132121715,170.533637689071,153.503635961371,70.4322095485986,58.4657373211242,74.4567217154117,441.564682807549,266.611161921872,292.927658919656,89.6826756565318,80.6921016573253,88.5552729946492,366.288094689812,340.471379069166,305.902092049174,107.244805112415,90.8331323498277,89.4717339961443,27.6400605666122,36.1987772911503,152.468721057083,217.687240876291,229.83031079322,240.707623470466,222.223534767103,201.612099193801,291.141282933122,24.8828270963964,28.5764605063156,22.9670723431721,87.4637636813186,32.0816193535795,53.5091003383956,56.8853362522665,30.9582188646036,29.1363845296363,32.8590889259609,197.423928034255,13.4647699496529,164.91921650102,34.523580026461,69.1136635768561,63.18864624816,73.8540938707851,110.88615082897,136.096918410039,119.395169415703,135.778796147797,180.460552597774,113.398561813134,165.410297326835,112.975933980507,100.651551057786,235.395760797284,256.572215846482,121.59755827929,62.7831252411022,44.3928020935122,51.2093015104451,357.999628177526,309.72790810821,125.0260803523,285.071885115333,300.465662363138,373.395116073529,263.642052485106,105.200062857377,149.412771702722,141.777467481292,211.28362331002,31.4891471969743,48.0495398265958,45.0155324513373,52.1438669711574,107.905887654006,82.5052358634433,113.191683268152,165.311453902231,29.9639510176651,29.6896545863476,35.1902248327898,47.1270824719286,41.1509928853885,48.058798980059,52.4744447840256,41.2000932314281,34.4084461783485,34.2272716462571,48.5919583966463,40.3895256444229,54.1755198556332,56.1793631758366,62.2638654589103,67.2933672576121,63.5580505095998,83.4796861653964,87.7254022576755,175.615074920223,117.495732838225,206.194334883344,348.839087475817,443.863161823309,342.059079623457,516.560505808671,258.656636733876,87.9834435842882,141.749657900049,37.8164310328868,21.9686898051291,26.0105072483691,20.4899263502128,31.6643133658648,37.5818894097831,55.7361084509798,100.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| ||
|EntrezGene=68943 | |||
|HGNC= | |||
|MCL_coexpression_id=1132 | |||
|UniProt=A2AM78,Q99MQ3 | |||
|association_with_transcript=0bp_to_ENSMUST00000105817,NM_026880,uc008vku.1,uc008vkv.1_5end | |||
|description=CAGE_peak_1_at_Pink1_5end | |||
|id=chr4:137882149..137882220,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004111!4.44e-13!122;UBERON:0000025!1.62e-11!114;UBERON:0000955!1.32e-10!50;UBERON:0006238!1.32e-10!50;UBERON:0001017!1.88e-10!73;UBERON:0005743!1.88e-10!73;UBERON:0000033!2.43e-10!63;UBERON:0002616!3.49e-10!49;UBERON:0001049!5.05e-10!52;UBERON:0005068!5.05e-10!52;UBERON:0006241!5.05e-10!52;UBERON:0007135!5.05e-10!52;UBERON:0004121!7.95e-10!102;UBERON:0000924!7.95e-10!102;UBERON:0006601!7.95e-10!102;UBERON:0000073!2.57e-09!75;UBERON:0001016!2.57e-09!75;UBERON:0007023!4.88e-09!51;UBERON:0002020!3.50e-08!34;UBERON:0000062!5.70e-08!269;UBERON:0002346!1.01e-07!71;UBERON:0003075!1.01e-07!71;UBERON:0007284!1.01e-07!71;UBERON:0002791!1.72e-07!29;UBERON:0003528!1.72e-07!29;UBERON:0001893!1.72e-07!29;UBERON:0000480!9.45e-07!308;UBERON:0000467!9.45e-07!308 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004111,4.44e-13,122;UBERON:0000025,1.62e-11,114;UBERON:0000073,5.65e-11,54;UBERON:0001017,1.88e-10,73;UBERON:0001049,5.05e-10,52;UBERON:0005068,5.05e-10,52;UBERON:0006241,5.05e-10,52;UBERON:0007135,5.05e-10,52;UBERON:0004121,7.13e-10,95;UBERON:0000924,7.13e-10,95;UBERON:0006601,7.13e-10,95;UBERON:0010314,2.38e-09,92;UBERON:0001016,2.57e-09,75;UBERON:0000955,4.16e-09,47;UBERON:0006238,4.16e-09,47;UBERON:0007023,4.88e-09,51;UBERON:0002616,1.05e-08,46;UBERON:0002020,3.50e-08,34;UBERON:0010371,4.51e-08,73;UBERON:0002346,6.89e-08,64;UBERON:0003075,6.89e-08,64;UBERON:0007284,6.89e-08,64;UBERON:0003528,1.72e-07,29;UBERON:0002791,1.72e-07,29;UBERON:0001893,1.72e-07,29 | |||
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| |||
|short_description=p1@Pink1 | |||
}} |
Revision as of 04:13, 14 September 2013
Short description: | p1@Pink1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Pink1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1132 |
Association with transcript: | 0bp_to_ENSMUST00000105817, NM_026880, uc008vku.1, uc008vkv.1_5end |
EntrezGene: | Pink1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
anatomical conduit | 4.44e-13 | 122 |
tube | 1.62e-11 | 114 |
regional part of nervous system | 5.65e-11 | 54 |
central nervous system | 1.88e-10 | 73 |
neural tube | 5.05e-10 | 52 |
neural rod | 5.05e-10 | 52 |
future spinal cord | 5.05e-10 | 52 |
neural keel | 5.05e-10 | 52 |
ectoderm-derived structure | 7.13e-10 | 95 |
ectoderm | 7.13e-10 | 95 |
presumptive ectoderm | 7.13e-10 | 95 |
structure with developmental contribution from neural crest | 2.38e-09 | 92 |
nervous system | 2.57e-09 | 75 |
brain | 4.16e-09 | 47 |
future brain | 4.16e-09 | 47 |
adult organism | 4.88e-09 | 51 |
regional part of brain | 1.05e-08 | 46 |
gray matter | 3.50e-08 | 34 |
ecto-epithelium | 4.51e-08 | 73 |
neurectoderm | 6.89e-08 | 64 |
neural plate | 6.89e-08 | 64 |
presumptive neural plate | 6.89e-08 | 64 |
brain grey matter | 1.72e-07 | 29 |
regional part of telencephalon | 1.72e-07 | 29 |
telencephalon | 1.72e-07 | 29 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.