FFCP PHASE1:Mm9::chr5:23349903..23349969,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=66169|HGNC=|MCL_coexpression_id=809|UniProt=Q9D173|association_with_transcript=0bp_to_NM_025394,uc008wqs.2_5end|description=CAGE_peak_1_at_Tomm7_5end|id=chr5:23349903..23349969,-|ontology_enrichment_celltype=CL:0002371!3.03e-16!118;CL:0000144!9.40e-16!121;CL:0000012!9.40e-16!121;CL:0000548!3.88e-15!115;CL:0000004!3.88e-15!115;CL:0000255!3.88e-15!115;CL:0000723!2.59e-14!91;CL:0000048!2.59e-14!91;CL:0000034!3.66e-14!97;CL:0000055!1.02e-10!50;CL:0000221!1.44e-10!44;CL:0000133!1.44e-10!44;CL:0002319!2.46e-10!43;CL:0002321!3.77e-09!70;CL:0000220!3.77e-09!70;CL:0000117!1.88e-08!23;CL:0000337!1.88e-08!23;CL:0000219!5.03e-08!54;CL:0000393!9.96e-07!39;CL:0000211!9.96e-07!39|ontology_enrichment_celltype_v019_2=CL:0000723,2.59e-14,91;CL:0000048,2.59e-14,91;CL:0000034,3.66e-14,97;CL:0000221,1.44e-10,44;CL:0000133,1.44e-10,44;CL:0002319,2.46e-10,43;CL:0002321,3.77e-09,70;CL:0000117,1.88e-08,23;CL:0000337,1.88e-08,23;CL:0000219,5.03e-08,54;CL:0000393,9.96e-07,39;CL:0000211,9.96e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.46e-10!73;UBERON:0005743!1.46e-10!73;UBERON:0000073!2.68e-10!75;UBERON:0001016!2.68e-10!75;UBERON:0002020!4.58e-09!34;UBERON:0002616!3.62e-08!49;UBERON:0000955!5.23e-08!50;UBERON:0006238!5.23e-08!50;UBERON:0001049!5.39e-08!52;UBERON:0005068!5.39e-08!52;UBERON:0006241!5.39e-08!52;UBERON:0007135!5.39e-08!52;UBERON:0002791!6.71e-08!29;UBERON:0003528!6.71e-08!29;UBERON:0001893!6.71e-08!29;UBERON:0002780!7.12e-07!39;UBERON:0001890!7.12e-07!39;UBERON:0006240!7.12e-07!39;UBERON:0003080!9.73e-07!40|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.46e-10,73;UBERON:0001016,2.68e-10,75;UBERON:0000073,2.38e-09,54;UBERON:0002020,4.58e-09,34;UBERON:0001049,5.39e-08,52;UBERON:0005068,5.39e-08,52;UBERON:0006241,5.39e-08,52;UBERON:0007135,5.39e-08,52;UBERON:0003528,6.71e-08,29;UBERON:0002791,6.71e-08,29;UBERON:0001893,6.71e-08,29;UBERON:0002616,4.44e-07,46;UBERON:0000955,6.21e-07,47;UBERON:0006238,6.21e-07,47;UBERON:0002780,7.12e-07,39;UBERON:0001890,7.12e-07,39;UBERON:0006240,7.12e-07,39;UBERON:0003080,9.73e-07,40|phase1_expression=59.5753711229834,38.7362702479691,39.1299345875001,25.4069937497737,29.5528480668345,47.5098339510648,56.3006463835217,56.2977690205273,38.2945324252534,37.6843887378409,43.3181459610528,39.9658516566635,48.6210073004624,48.9554253546385,46.6353666541928,47.5816878366091,53.8662646158673,49.6852910439224,45.659106390711,70.873071850271,73.3073161102221,74.1703405470613,71.3075424349294,72.9565447937934,78.228564843905,91.8771142584032,72.7987773508836,61.4093013154784,93.3014989530796,86.9503947671761,107.982758689133,38.1018404075779,53.5106365198576,63.3926724061755,112.363280083246,123.678576146718,109.43477495663,61.1056180875885,110.168283577856,94.7577976592575,70.5877785637217,73.0858668905537,70.8845115425484,57.78663945079,60.2178971443916,67.5452047954988,104.840440142637,240.917797800393,125.440810341383,167.015283304809,154.824982317651,215.628846547457,56.8783034535726,71.8108520591231,58.4803210507887,45.7921796143986,54.7278870283025,73.2254371033968,60.6949382578793,62.4209355540999,84.933408069828,132.8270565711,116.497618290559,161.531999252011,127.56376077114,147.069383793843,128.528447412396,145.618737716869,71.7532117174665,106.924703158699,101.376631371366,101.40609946335,117.281195245307,88.0708846355519,100.829435511185,140.640474351333,91.3961812294926,86.6997025598425,101.073098882608,60.535806068159,63.4009370164699,64.0723445784815,151.875551456751,176.144696939916,98.4020715682657,55.6848026545232,67.4841766987748,64.6806077013793,57.2490021598871,45.0406498236442,38.5519769973231,73.9964534203992,67.3171620370673,116.036186202131,66.9269709971099,53.3151995645829,70.0817656457442,49.9360845153709,133.270220361272,76.6746876687438,70.5625533081169,38.4979432242953,33.1246811618639,7.11066703153331,199.171757730317,185.712781393247,204.231875785972,67.7110406734026,20.7150306917737,35.4776712364931,47.7084648606874,52.3680622696883,52.3497178771253,63.1527863915489,39.2746281833254,55.5446333677166,32.6297357409373,52.0557684911682,45.1151381494436,28.1474318908492,35.7763259905838,43.63877278217,52.1896931410742,51.5294202740323,39.585427587743,52.6241533729698,90.7000492509816,119.380643467688,103.562235064548,51.8275612340687,69.0825910256126,47.9999625071142,52.6687690182598,44.4944895754775,65.2454459917019,52.890651760089,46.031392460343,41.1787072719408,83.90395579998,39.3526270507706,47.3638412384242,44.6010082600937,38.3532336485394,57.7199452310789,28.3712201461037,37.9216612043155,42.7279863992363,37.7706921278963,41.8201906289714,33.6608822698718,35.7180782052816,49.3190397962043,42.5412291315165,33.7804601526502,39.7159523267331,70.4581304537466,107.438617658925,93.1599423755269,90.3639928077985,35.4185071035708,49.9540507759735,77.0665623053144,37.6424129580484,63.358082622664,68.4945981219959,85.3399577233997,73.238638582096,89.2087215685175,65.3302604156517,8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| ||
|EntrezGene=66169 | |||
|HGNC= | |||
|MCL_coexpression_id=809 | |||
|UniProt=Q9D173 | |||
|association_with_transcript=0bp_to_NM_025394,uc008wqs.2_5end | |||
|description=CAGE_peak_1_at_Tomm7_5end | |||
|id=chr5:23349903..23349969,- | |||
|ontology_enrichment_celltype=CL:0002371!3.03e-16!118;CL:0000144!9.40e-16!121;CL:0000012!9.40e-16!121;CL:0000548!3.88e-15!115;CL:0000004!3.88e-15!115;CL:0000255!3.88e-15!115;CL:0000723!2.59e-14!91;CL:0000048!2.59e-14!91;CL:0000034!3.66e-14!97;CL:0000055!1.02e-10!50;CL:0000221!1.44e-10!44;CL:0000133!1.44e-10!44;CL:0002319!2.46e-10!43;CL:0002321!3.77e-09!70;CL:0000220!3.77e-09!70;CL:0000117!1.88e-08!23;CL:0000337!1.88e-08!23;CL:0000219!5.03e-08!54;CL:0000393!9.96e-07!39;CL:0000211!9.96e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000723,2.59e-14,91;CL:0000048,2.59e-14,91;CL:0000034,3.66e-14,97;CL:0000221,1.44e-10,44;CL:0000133,1.44e-10,44;CL:0002319,2.46e-10,43;CL:0002321,3.77e-09,70;CL:0000117,1.88e-08,23;CL:0000337,1.88e-08,23;CL:0000219,5.03e-08,54;CL:0000393,9.96e-07,39;CL:0000211,9.96e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.46e-10!73;UBERON:0005743!1.46e-10!73;UBERON:0000073!2.68e-10!75;UBERON:0001016!2.68e-10!75;UBERON:0002020!4.58e-09!34;UBERON:0002616!3.62e-08!49;UBERON:0000955!5.23e-08!50;UBERON:0006238!5.23e-08!50;UBERON:0001049!5.39e-08!52;UBERON:0005068!5.39e-08!52;UBERON:0006241!5.39e-08!52;UBERON:0007135!5.39e-08!52;UBERON:0002791!6.71e-08!29;UBERON:0003528!6.71e-08!29;UBERON:0001893!6.71e-08!29;UBERON:0002780!7.12e-07!39;UBERON:0001890!7.12e-07!39;UBERON:0006240!7.12e-07!39;UBERON:0003080!9.73e-07!40 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.46e-10,73;UBERON:0001016,2.68e-10,75;UBERON:0000073,2.38e-09,54;UBERON:0002020,4.58e-09,34;UBERON:0001049,5.39e-08,52;UBERON:0005068,5.39e-08,52;UBERON:0006241,5.39e-08,52;UBERON:0007135,5.39e-08,52;UBERON:0003528,6.71e-08,29;UBERON:0002791,6.71e-08,29;UBERON:0001893,6.71e-08,29;UBERON:0002616,4.44e-07,46;UBERON:0000955,6.21e-07,47;UBERON:0006238,6.21e-07,47;UBERON:0002780,7.12e-07,39;UBERON:0001890,7.12e-07,39;UBERON:0006240,7.12e-07,39;UBERON:0003080,9.73e-07,40 | |||
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| |||
|short_description=p1@Tomm7 | |||
}} |
Revision as of 07:15, 14 September 2013
Short description: | p1@Tomm7 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Tomm7_5end |
Coexpression cluster: | MCL_coexpression_mm9:809 |
Association with transcript: | 0bp_to_NM_025394, uc008wqs.2_5end |
EntrezGene: | Tomm7 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
somatic stem cell | 2.59e-14 | 91 |
multi fate stem cell | 2.59e-14 | 91 |
stem cell | 3.66e-14 | 97 |
ectodermal cell | 1.44e-10 | 44 |
neurectodermal cell | 1.44e-10 | 44 |
neural cell | 2.46e-10 | 43 |
embryonic cell | 3.77e-09 | 70 |
CNS neuron (sensu Vertebrata) | 1.88e-08 | 23 |
neuroblast (sensu Vertebrata) | 1.88e-08 | 23 |
motile cell | 5.03e-08 | 54 |
electrically responsive cell | 9.96e-07 | 39 |
electrically active cell | 9.96e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.46e-10 | 73 |
nervous system | 2.68e-10 | 75 |
regional part of nervous system | 2.38e-09 | 54 |
gray matter | 4.58e-09 | 34 |
neural tube | 5.39e-08 | 52 |
neural rod | 5.39e-08 | 52 |
future spinal cord | 5.39e-08 | 52 |
neural keel | 5.39e-08 | 52 |
brain grey matter | 6.71e-08 | 29 |
regional part of telencephalon | 6.71e-08 | 29 |
telencephalon | 6.71e-08 | 29 |
regional part of brain | 4.44e-07 | 46 |
brain | 6.21e-07 | 47 |
future brain | 6.21e-07 | 47 |
regional part of forebrain | 7.12e-07 | 39 |
forebrain | 7.12e-07 | 39 |
future forebrain | 7.12e-07 | 39 |
anterior neural tube | 9.73e-07 | 40 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.