FFCP PHASE1:Mm9::chr11:77306813..77306837,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=216963|HGNC=|UniProt=Q68FF6|association_with_transcript=-76bp_to_NM_001004144,uc007kgy.1_5end|description=CAGE_peak_3_at_Git1_5end|id=chr11:77306813..77306837,+|ontology_enrichment_celltype=CL:0000221!8.36e-12!44;CL:0000133!8.36e-12!44;CL:0002319!2.83e-11!43;CL:0002321!6.00e-11!70;CL:0000220!6.00e-11!70;CL:0000540!4.83e-10!33;CL:0000047!4.83e-10!33;CL:0000031!4.83e-10!33;CL:0000404!4.83e-10!33;CL:0000144!3.57e-09!121;CL:0000012!3.57e-09!121;CL:0000548!4.44e-09!115;CL:0000004!4.44e-09!115;CL:0000255!4.44e-09!115;CL:0000055!1.85e-08!50;CL:0000117!2.84e-08!23;CL:0000337!2.84e-08!23;CL:0002371!3.61e-08!118;CL:0000393!9.64e-08!39;CL:0000211!9.64e-08!39|ontology_enrichment_celltype_v019_2=CL:0000221,5.87e-12,44;CL:0000133,5.87e-12,44;CL:0002319,2.00e-11,43;CL:0002321,3.38e-11,70;CL:0000540,3.98e-10,33;CL:0000047,3.98e-10,33;CL:0000031,3.98e-10,33;CL:0000404,3.98e-10,33;CL:0000117,2.33e-08,23;CL:0000337,2.33e-08,23;CL:0000393,8.29e-08,39;CL:0000211,8.29e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.31e-18!75;UBERON:0001016!1.31e-18!75;UBERON:0001017!2.79e-17!73;UBERON:0005743!2.79e-17!73;UBERON:0004121!5.33e-14!102;UBERON:0000924!5.33e-14!102;UBERON:0006601!5.33e-14!102;UBERON:0001049!2.05e-12!52;UBERON:0005068!2.05e-12!52;UBERON:0006241!2.05e-12!52;UBERON:0007135!2.05e-12!52;UBERON:0000955!3.51e-12!50;UBERON:0006238!3.51e-12!50;UBERON:0002020!6.93e-12!34;UBERON:0002616!7.01e-12!49;UBERON:0000033!2.43e-10!63;UBERON:0002791!3.18e-10!29;UBERON:0003528!3.18e-10!29;UBERON:0001893!3.18e-10!29;UBERON:0003080!2.02e-09!40;UBERON:0002780!5.68e-09!39;UBERON:0001890!5.68e-09!39;UBERON:0006240!5.68e-09!39;UBERON:0007811!2.72e-08!86;UBERON:0000064!3.77e-08!99;UBERON:0002346!9.71e-08!71;UBERON:0003075!9.71e-08!71;UBERON:0007284!9.71e-08!71;UBERON:0000956!1.78e-07!21;UBERON:0001869!1.78e-07!21;UBERON:0000203!1.78e-07!21;UBERON:0003056!1.99e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.08e-18,75;UBERON:0001017,2.31e-17,73;UBERON:0004121,5.86e-17,95;UBERON:0000924,5.86e-17,95;UBERON:0006601,5.86e-17,95;UBERON:0000073,1.31e-13,54;UBERON:0001049,2.03e-12,52;UBERON:0005068,2.03e-12,52;UBERON:0006241,2.03e-12,52;UBERON:0007135,2.03e-12,52;UBERON:0002020,5.61e-12,34;UBERON:0010371,3.88e-11,73;UBERON:0000955,1.66e-10,47;UBERON:0006238,1.66e-10,47;UBERON:0003528,2.59e-10,29;UBERON:0002791,2.59e-10,29;UBERON:0001893,2.59e-10,29;UBERON:0002346,3.11e-10,64;UBERON:0003075,3.11e-10,64;UBERON:0007284,3.11e-10,64;UBERON:0002616,3.24e-10,46;UBERON:0003080,2.01e-09,40;UBERON:0002780,5.66e-09,39;UBERON:0001890,5.66e-09,39;UBERON:0006240,5.66e-09,39;UBERON:0000956,1.47e-07,21;UBERON:0001869,1.47e-07,21;UBERON:0000203,1.47e-07,21;UBERON:0003056,2.13e-07,49;UBERON:0010314,6.16e-07,92|phase1_expression=3.84357233051505,3.48975407639361,6.3699893514535,5.74682001482977,7.01254021924886,4.02910252588535,2.10251376535973,2.06597317506522,5.63154888606667,5.14941957908386,3.4243593645101,4.3874687447435,1.71200729931206,2.09808965805594,0.999329285446988,1.41732687172878,4.89693314689703,2.05050407482854,1.64537320326887,1.69755860719212,2.72138528483423,1.68794617041505,2.61199789138935,1.59992422793407,3.21172993494038,1.72269589234506,3.87685796543167,3.66301095566011,2.85035129184561,4.78857246543868,2.21730510655305,1.90509202037889,3.07532393792285,0,3.17736781726402,2.99222361645286,3.26670970019791,2.51118978442145,0,1.0470474879476,1.17646297606203,2.73218193983378,2.91306211818692,1.1330713617802,1.4192770370732,1.83546752161682,3.12956537739216,2.61630187656536,3.95435128922049,2.13872888981712,2.65974201088189,0,3.6912173332702,5.80289713609076,2.35265659399725,1.80081605225163,1.71920063963254,5.15672092277442,5.05791152148994,1.5869729378161,6.33831403506179,2.71075625655306,2.66788438833342,6.74924787961049,5.93319817540185,7.8152812644071,8.08920298399693,12.6792040756113,6.73982480005105,6.88530285491622,5.67877395648731,5.99867067247988,5.52171352379034,5.02212276781312,7.3801012684042,0,6.60695285996332,13.9179198512855,11.981309593987,2.76961204233407,4.7573574673253,5.2091337055676,11.4465029590566,7.87867654044352,6.57032465440283,3.53554302568401,3.98640706237488,4.47358669980721,23.4751199332871,12.0914496170857,4.63783181922684,0.860423876981386,1.3599426674155,0,0,0.448026887097336,1.26399978118577,1.02258193546835,1.81850203222008,2.47337702157238,6.90132756905734,6.41632387071589,15.2883143823987,7.11066703153331,3.46385665617943,2.28023878927589,4.54972000513305,1.37020655662872,0.517875767294343,2.9688427812965,1.21439728736295,0.304465478312141,0.691846491768175,1.65794904607885,1.76383060703557,1.88499886994513,3.46072954828123,1.59059292611903,1.76922110389975,2.58826959915855,1.76673214768315,1.45462575940567,0,1.75668478206928,4.81727425670947,2.04365644166873,3.83408398418945,2.99951365496704,3.04968544975355,6.14141621559773,2.74500361691176,6.28271760564322,11.298580812498,8.43861009190091,5.40248915854856,6.00292673350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| ||
|EntrezGene=216963 | |||
|HGNC= | |||
|UniProt=Q68FF6 | |||
|association_with_transcript=-76bp_to_NM_001004144,uc007kgy.1_5end | |||
|description=CAGE_peak_3_at_Git1_5end | |||
|id=chr11:77306813..77306837,+ | |||
|ontology_enrichment_celltype=CL:0000221!8.36e-12!44;CL:0000133!8.36e-12!44;CL:0002319!2.83e-11!43;CL:0002321!6.00e-11!70;CL:0000220!6.00e-11!70;CL:0000540!4.83e-10!33;CL:0000047!4.83e-10!33;CL:0000031!4.83e-10!33;CL:0000404!4.83e-10!33;CL:0000144!3.57e-09!121;CL:0000012!3.57e-09!121;CL:0000548!4.44e-09!115;CL:0000004!4.44e-09!115;CL:0000255!4.44e-09!115;CL:0000055!1.85e-08!50;CL:0000117!2.84e-08!23;CL:0000337!2.84e-08!23;CL:0002371!3.61e-08!118;CL:0000393!9.64e-08!39;CL:0000211!9.64e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,5.87e-12,44;CL:0000133,5.87e-12,44;CL:0002319,2.00e-11,43;CL:0002321,3.38e-11,70;CL:0000540,3.98e-10,33;CL:0000047,3.98e-10,33;CL:0000031,3.98e-10,33;CL:0000404,3.98e-10,33;CL:0000117,2.33e-08,23;CL:0000337,2.33e-08,23;CL:0000393,8.29e-08,39;CL:0000211,8.29e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.31e-18!75;UBERON:0001016!1.31e-18!75;UBERON:0001017!2.79e-17!73;UBERON:0005743!2.79e-17!73;UBERON:0004121!5.33e-14!102;UBERON:0000924!5.33e-14!102;UBERON:0006601!5.33e-14!102;UBERON:0001049!2.05e-12!52;UBERON:0005068!2.05e-12!52;UBERON:0006241!2.05e-12!52;UBERON:0007135!2.05e-12!52;UBERON:0000955!3.51e-12!50;UBERON:0006238!3.51e-12!50;UBERON:0002020!6.93e-12!34;UBERON:0002616!7.01e-12!49;UBERON:0000033!2.43e-10!63;UBERON:0002791!3.18e-10!29;UBERON:0003528!3.18e-10!29;UBERON:0001893!3.18e-10!29;UBERON:0003080!2.02e-09!40;UBERON:0002780!5.68e-09!39;UBERON:0001890!5.68e-09!39;UBERON:0006240!5.68e-09!39;UBERON:0007811!2.72e-08!86;UBERON:0000064!3.77e-08!99;UBERON:0002346!9.71e-08!71;UBERON:0003075!9.71e-08!71;UBERON:0007284!9.71e-08!71;UBERON:0000956!1.78e-07!21;UBERON:0001869!1.78e-07!21;UBERON:0000203!1.78e-07!21;UBERON:0003056!1.99e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.08e-18,75;UBERON:0001017,2.31e-17,73;UBERON:0004121,5.86e-17,95;UBERON:0000924,5.86e-17,95;UBERON:0006601,5.86e-17,95;UBERON:0000073,1.31e-13,54;UBERON:0001049,2.03e-12,52;UBERON:0005068,2.03e-12,52;UBERON:0006241,2.03e-12,52;UBERON:0007135,2.03e-12,52;UBERON:0002020,5.61e-12,34;UBERON:0010371,3.88e-11,73;UBERON:0000955,1.66e-10,47;UBERON:0006238,1.66e-10,47;UBERON:0003528,2.59e-10,29;UBERON:0002791,2.59e-10,29;UBERON:0001893,2.59e-10,29;UBERON:0002346,3.11e-10,64;UBERON:0003075,3.11e-10,64;UBERON:0007284,3.11e-10,64;UBERON:0002616,3.24e-10,46;UBERON:0003080,2.01e-09,40;UBERON:0002780,5.66e-09,39;UBERON:0001890,5.66e-09,39;UBERON:0006240,5.66e-09,39;UBERON:0000956,1.47e-07,21;UBERON:0001869,1.47e-07,21;UBERON:0000203,1.47e-07,21;UBERON:0003056,2.13e-07,49;UBERON:0010314,6.16e-07,92 | |||
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| |||
|short_description=p3@Git1 | |||
}} |
Revision as of 20:59, 12 September 2013
Short description: | p3@Git1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Git1_5end |
Coexpression cluster: | NA |
Association with transcript: | -76bp_to_NM_001004144, uc007kgy.1_5end |
EntrezGene: | Git1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 5.87e-12 | 44 |
neurectodermal cell | 5.87e-12 | 44 |
neural cell | 2.00e-11 | 43 |
embryonic cell | 3.38e-11 | 70 |
neuron | 3.98e-10 | 33 |
neuronal stem cell | 3.98e-10 | 33 |
neuroblast | 3.98e-10 | 33 |
electrically signaling cell | 3.98e-10 | 33 |
CNS neuron (sensu Vertebrata) | 2.33e-08 | 23 |
neuroblast (sensu Vertebrata) | 2.33e-08 | 23 |
electrically responsive cell | 8.29e-08 | 39 |
electrically active cell | 8.29e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.08e-18 | 75 |
central nervous system | 2.31e-17 | 73 |
ectoderm-derived structure | 5.86e-17 | 95 |
ectoderm | 5.86e-17 | 95 |
presumptive ectoderm | 5.86e-17 | 95 |
regional part of nervous system | 1.31e-13 | 54 |
neural tube | 2.03e-12 | 52 |
neural rod | 2.03e-12 | 52 |
future spinal cord | 2.03e-12 | 52 |
neural keel | 2.03e-12 | 52 |
gray matter | 5.61e-12 | 34 |
ecto-epithelium | 3.88e-11 | 73 |
brain | 1.66e-10 | 47 |
future brain | 1.66e-10 | 47 |
brain grey matter | 2.59e-10 | 29 |
regional part of telencephalon | 2.59e-10 | 29 |
telencephalon | 2.59e-10 | 29 |
neurectoderm | 3.11e-10 | 64 |
neural plate | 3.11e-10 | 64 |
presumptive neural plate | 3.11e-10 | 64 |
regional part of brain | 3.24e-10 | 46 |
anterior neural tube | 2.01e-09 | 40 |
regional part of forebrain | 5.66e-09 | 39 |
forebrain | 5.66e-09 | 39 |
future forebrain | 5.66e-09 | 39 |
cerebral cortex | 1.47e-07 | 21 |
cerebral hemisphere | 1.47e-07 | 21 |
pallium | 1.47e-07 | 21 |
pre-chordal neural plate | 2.13e-07 | 49 |
structure with developmental contribution from neural crest | 6.16e-07 | 92 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.