FFCP PHASE1:Mm9::chr2:32208803..32208831,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=13429|HGNC=|MCL_coexpression_id=1|UniProt=E9QMG2,P39053|association_with_transcript=0bp_to_ENSMUST00000035664,ENSMUST00000091089,ENSMUST00000113350,NM_010065,uc008jfc.1,uc008jfd.1_5end|description=CAGE_peak_1_at_Dnm1_5end|id=chr2:32208803..32208831,-|ontology_enrichment_celltype=CL:0000117!9.68e-10!23;CL:0000337!9.68e-10!23|ontology_enrichment_celltype_v019_2=CL:0000117,8.66e-10,23;CL:0000337,8.66e-10,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.29e-15!52;UBERON:0005068!1.29e-15!52;UBERON:0006241!1.29e-15!52;UBERON:0007135!1.29e-15!52;UBERON:0000033!7.52e-15!63;UBERON:0000955!8.12e-15!50;UBERON:0006238!8.12e-15!50;UBERON:0002616!2.96e-14!49;UBERON:0001017!5.01e-14!73;UBERON:0005743!5.01e-14!73;UBERON:0002020!1.27e-13!34;UBERON:0002346!1.42e-13!71;UBERON:0003075!1.42e-13!71;UBERON:0007284!1.42e-13!71;UBERON:0000073!3.76e-13!75;UBERON:0001016!3.76e-13!75;UBERON:0003056!1.96e-12!49;UBERON:0004121!4.98e-12!102;UBERON:0000924!4.98e-12!102;UBERON:0006601!4.98e-12!102;UBERON:0003080!1.43e-11!40;UBERON:0002791!4.71e-11!29;UBERON:0003528!4.71e-11!29;UBERON:0001893!4.71e-11!29;UBERON:0002780!4.99e-11!39;UBERON:0001890!4.99e-11!39;UBERON:0006240!4.99e-11!39;UBERON:0002021!4.49e-08!10;UBERON:0000411!4.49e-08!10;UBERON:0001950!4.49e-08!10;UBERON:0000956!3.12e-07!21;UBERON:0001869!3.12e-07!21;UBERON:0000203!3.12e-07!21;UBERON:0002619!7.98e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0000073,9.43e-17,54;UBERON:0001049,1.73e-15,52;UBERON:0005068,1.73e-15,52;UBERON:0006241,1.73e-15,52;UBERON:0007135,1.73e-15,52;UBERON:0002346,2.50e-15,64;UBERON:0003075,2.50e-15,64;UBERON:0007284,2.50e-15,64;UBERON:0010371,3.07e-14,73;UBERON:0001017,8.52e-14,73;UBERON:0002020,1.72e-13,34;UBERON:0004121,5.26e-13,95;UBERON:0000924,5.26e-13,95;UBERON:0006601,5.26e-13,95;UBERON:0001016,6.27e-13,75;UBERON:0000955,6.30e-13,47;UBERON:0006238,6.30e-13,47;UBERON:0002616,2.20e-12,46;UBERON:0003056,2.46e-12,49;UBERON:0003080,1.85e-11,40;UBERON:0003528,6.45e-11,29;UBERON:0002791,6.45e-11,29;UBERON:0001893,6.45e-11,29;UBERON:0002780,6.47e-11,39;UBERON:0001890,6.47e-11,39;UBERON:0006240,6.47e-11,39;UBERON:0000160,8.34e-09,31;UBERON:0002021,4.11e-08,10;UBERON:0000411,4.11e-08,10;UBERON:0001950,4.11e-08,10;UBERON:0010314,4.78e-08,92;UBERON:0000956,4.31e-07,21;UBERON:0001869,4.31e-07,21;UBERON:0000203,4.31e-07,21|phase1_expression=17.6163731815273,75.7276634577414,95.5498402718026,92.55404865989,108.694373398357,35.086767829585,32.2385444021825,0,0,0,0,0,0,0.0874204024189974,0.666219523631325,0.404950534779652,0,0,0,0,58.1696104633317,0.695036658406197,0.522399578277871,25.5987876469451,22.7115188256498,57.997428375617,54.2760115160434,42.0168903737484,19.7624356234629,14.617747526076,17.2949798311138,1.27006134691926,1.23012957516914,0,8.66554859253824,8.47796691328311,11.637653306955,0,0,0,0,0,0,10.4494358919729,10.644577778049,3.67093504323363,5.47673941043627,0.218025156380447,0.439372365468944,0.58328969722285,6.57936181639204,1.43752564364972,0,0,0,1.28629718017973,2.0057340795713,4.64104883049698,49.9721658323206,70.3558002431804,55.1433321050376,4.40497891689872,4.4464739805557,0.899899717281399,0.988866362566974,0,5.09320187881288,1.92109152660777,11.3021677416241,12.8255641415106,11.567872874326,142.254190233094,115.293378376742,17.3936934885235,18.8815577905926,20.2228133054205,236.749144148686,242.222880347601,245.924059743246,52.2269699411568,55.7159749538675,40.1103295328705,235.630451157166,164.326682129251,226.447003205233,119.913834287783,110.907539342501,64.6806077013793,1.8931548333296,3.6274348851257,0.869593466105033,0,0,0,0,0,16.2915527352832,9.71452838694929,8.83272415649754,9.18682893726885,5.49289337129054,15.3991772897181,7.64415719119937,14.2213340630666,0.216491041011214,0.253359865475099,0,10.5049169341535,2.84831672011889,5.49235914539852,7.98032503124225,3.65358573974569,3.92046345335299,5.27529241934179,9.05433044944927,3.89566433121994,14.8316980640624,4.48258006451726,2.65383165584962,20.0590893934787,6.8460870722722,11.1521308221101,11.1835056730873,168.056177484628,190.805949907058,28.6111901833622,0.11981512450592,0,0,226.034074861877,200.385264034558,62.4502130000936,344.172153980707,396.614674319343,206.333528247643,245.957754810721,15.9887801244997,9.08170885453679,2.0217820674694,27.7783249770146,14.3132487258974,9.19608417733892,11.7040384373477,13.2620239695429,14.2196283226275,12.5551445879153,15.7418897260344,62.6062157188418,16.1675994699632,31.0133971475224,38.3573450677409,22.3579647076126,29.4730084179134,32.7357036530837,26.9574598694406,17.7140497468459,0,0,0,3.52113813310353,4.69052119962192,2.34080679899319,4.49814997611899,1.77087808572663,2.46827380619805,2.55787339225449,1.60964040839772,2.6856028744449,3.94943639792353,4.92502392237286,4.37771571547621,4.38599962275997,4.61055242111206,4.69722465661301,357.282622610452,33.0323805737503,53.1974240603915,33.5852219662701,7.03851226766272,9.75394021813842,18.0414445850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| ||
|EntrezGene=13429 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=E9QMG2,P39053 | |||
|association_with_transcript=0bp_to_ENSMUST00000035664,ENSMUST00000091089,ENSMUST00000113350,NM_010065,uc008jfc.1,uc008jfd.1_5end | |||
|description=CAGE_peak_1_at_Dnm1_5end | |||
|id=chr2:32208803..32208831,- | |||
|ontology_enrichment_celltype=CL:0000117!9.68e-10!23;CL:0000337!9.68e-10!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.66e-10,23;CL:0000337,8.66e-10,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.29e-15!52;UBERON:0005068!1.29e-15!52;UBERON:0006241!1.29e-15!52;UBERON:0007135!1.29e-15!52;UBERON:0000033!7.52e-15!63;UBERON:0000955!8.12e-15!50;UBERON:0006238!8.12e-15!50;UBERON:0002616!2.96e-14!49;UBERON:0001017!5.01e-14!73;UBERON:0005743!5.01e-14!73;UBERON:0002020!1.27e-13!34;UBERON:0002346!1.42e-13!71;UBERON:0003075!1.42e-13!71;UBERON:0007284!1.42e-13!71;UBERON:0000073!3.76e-13!75;UBERON:0001016!3.76e-13!75;UBERON:0003056!1.96e-12!49;UBERON:0004121!4.98e-12!102;UBERON:0000924!4.98e-12!102;UBERON:0006601!4.98e-12!102;UBERON:0003080!1.43e-11!40;UBERON:0002791!4.71e-11!29;UBERON:0003528!4.71e-11!29;UBERON:0001893!4.71e-11!29;UBERON:0002780!4.99e-11!39;UBERON:0001890!4.99e-11!39;UBERON:0006240!4.99e-11!39;UBERON:0002021!4.49e-08!10;UBERON:0000411!4.49e-08!10;UBERON:0001950!4.49e-08!10;UBERON:0000956!3.12e-07!21;UBERON:0001869!3.12e-07!21;UBERON:0000203!3.12e-07!21;UBERON:0002619!7.98e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,9.43e-17,54;UBERON:0001049,1.73e-15,52;UBERON:0005068,1.73e-15,52;UBERON:0006241,1.73e-15,52;UBERON:0007135,1.73e-15,52;UBERON:0002346,2.50e-15,64;UBERON:0003075,2.50e-15,64;UBERON:0007284,2.50e-15,64;UBERON:0010371,3.07e-14,73;UBERON:0001017,8.52e-14,73;UBERON:0002020,1.72e-13,34;UBERON:0004121,5.26e-13,95;UBERON:0000924,5.26e-13,95;UBERON:0006601,5.26e-13,95;UBERON:0001016,6.27e-13,75;UBERON:0000955,6.30e-13,47;UBERON:0006238,6.30e-13,47;UBERON:0002616,2.20e-12,46;UBERON:0003056,2.46e-12,49;UBERON:0003080,1.85e-11,40;UBERON:0003528,6.45e-11,29;UBERON:0002791,6.45e-11,29;UBERON:0001893,6.45e-11,29;UBERON:0002780,6.47e-11,39;UBERON:0001890,6.47e-11,39;UBERON:0006240,6.47e-11,39;UBERON:0000160,8.34e-09,31;UBERON:0002021,4.11e-08,10;UBERON:0000411,4.11e-08,10;UBERON:0001950,4.11e-08,10;UBERON:0010314,4.78e-08,92;UBERON:0000956,4.31e-07,21;UBERON:0001869,4.31e-07,21;UBERON:0000203,4.31e-07,21 | |||
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| |||
|short_description=p1@Dnm1 | |||
}} |
Revision as of 23:47, 13 September 2013
Short description: | p1@Dnm1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Dnm1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000035664, ENSMUST00000091089, ENSMUST00000113350, NM_010065, uc008jfc.1, uc008jfd.1_5end |
EntrezGene: | Dnm1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.66e-10 | 23 |
neuroblast (sensu Vertebrata) | 8.66e-10 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 9.43e-17 | 54 |
neural tube | 1.73e-15 | 52 |
neural rod | 1.73e-15 | 52 |
future spinal cord | 1.73e-15 | 52 |
neural keel | 1.73e-15 | 52 |
neurectoderm | 2.50e-15 | 64 |
neural plate | 2.50e-15 | 64 |
presumptive neural plate | 2.50e-15 | 64 |
ecto-epithelium | 3.07e-14 | 73 |
central nervous system | 8.52e-14 | 73 |
gray matter | 1.72e-13 | 34 |
ectoderm-derived structure | 5.26e-13 | 95 |
ectoderm | 5.26e-13 | 95 |
presumptive ectoderm | 5.26e-13 | 95 |
nervous system | 6.27e-13 | 75 |
brain | 6.30e-13 | 47 |
future brain | 6.30e-13 | 47 |
regional part of brain | 2.20e-12 | 46 |
pre-chordal neural plate | 2.46e-12 | 49 |
anterior neural tube | 1.85e-11 | 40 |
brain grey matter | 6.45e-11 | 29 |
regional part of telencephalon | 6.45e-11 | 29 |
telencephalon | 6.45e-11 | 29 |
regional part of forebrain | 6.47e-11 | 39 |
forebrain | 6.47e-11 | 39 |
future forebrain | 6.47e-11 | 39 |
intestine | 8.34e-09 | 31 |
occipital lobe | 4.11e-08 | 10 |
visual cortex | 4.11e-08 | 10 |
neocortex | 4.11e-08 | 10 |
structure with developmental contribution from neural crest | 4.78e-08 | 92 |
cerebral cortex | 4.31e-07 | 21 |
cerebral hemisphere | 4.31e-07 | 21 |
pallium | 4.31e-07 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.