FFCP PHASE1:Mm9::chr12:28022352..28022363,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=100|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr12:28022352..28022363,-|id=chr12:28022352..28022363,-|ontology_enrichment_celltype=CL:0000117!4.37e-09!23;CL:0000337!4.37e-09!23;CL:0002609!2.26e-07!6|ontology_enrichment_celltype_v019_2=CL:0002609,4.13e-46,6;CL:0000117,2.34e-23,23;CL:0000337,2.34e-23,23;CL:0000540,2.59e-16,33;CL:0000047,2.59e-16,33;CL:0000031,2.59e-16,33;CL:0000404,2.59e-16,33;CL:0002608,1.04e-15,3;CL:0000120,2.85e-15,3;CL:0000393,8.25e-14,39;CL:0000211,8.25e-14,39;CL:0002319,1.59e-12,43;CL:0000221,3.05e-12,44;CL:0000133,3.05e-12,44;CL:0002321,1.15e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003056!1.34e-07!49;UBERON:0002346!6.97e-07!71;UBERON:0003075!6.97e-07!71;UBERON:0007284!6.97e-07!71|ontology_enrichment_uberon_v019_2=UBERON:0000956,1.93e-13,21;UBERON:0001869,1.93e-13,21;UBERON:0000203,1.93e-13,21;UBERON:0003528,8.56e-10,29;UBERON:0002791,8.56e-10,29;UBERON:0001893,8.56e-10,29;UBERON:0002020,2.23e-08,34;UBERON:0001017,2.40e-07,73;UBERON:0002780,2.54e-07,39;UBERON:0001890,2.54e-07,39;UBERON:0006240,2.54e-07,39;UBERON:0001954,2.84e-07,7;UBERON:0003022,2.84e-07,7;UBERON:0002421,2.84e-07,7;UBERON:0000349,2.84e-07,7;UBERON:0002600,2.84e-07,7;UBERON:0001016,3.81e-07,75;UBERON:0003080,3.85e-07,40|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01158230429799,1.05798195854407,0,0,0,0,0,0,0,0,2.59224030771194,2.56511282830212,1.05162480675691,0,0.220868540951614,1.34739879136449,2.30029130443767,0,0,0,0,0.659431438650969,0.914876436024097,0.52091337055676,0,0,0,0,0.569486723196412,0.186399445825301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253359865475099,0,0,0,0,0,0.304465478312141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125654352112864,0,0,0,0,0,0,0,0,0,0,0.360124259610698,0.150704817835715,0.136072998302656,0.2562274405697,0.0937017245597288,0,0,0.189106080167819,0.175951124163949,0.219195732427575,0,0,0,0,0,0,0,0,0.234526059981096,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.617427674275707,0,0,0,0.232236671860439,0,0,0,0,0,0,0,0,0.19496408711912,0,0,0,0.189667900953082,0.342745537829186,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430846795465598,0,0,0,0,0,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0.356497378384721,0,0,0,0,0.36012218806262,0.258717367565509,0.214337035031592,0.177340233642274,0.178368817602071,0,0,0,0.21183207086382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0.209088296014469,0,0,0,0,0,0,0,0.149516546043979,0,0,0.129159823477731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0,0,0,0,0,0,0,0,0,1.03787347584177,0,0.170733605754134,0,0,0,0.222246727801615,0.206035057238894,0.64183841918363,0.252697211763798,0.25347929989024,0.188626341386076,0.0936415074698824,0.0640251524048693,0.287177344778066,0,0.231768651889711,0.38581844092741,0.412085900803307,0.147198920134397,0,0.177475806159338,0,0,0,0.0846146078916765,0.182927972872773,0.263069711437843,0.135804113845862,0.561142271657738,0,0,0.818462086339379,0,0.192906610981141,0.249810577937946,0,0,0,0,0|short_description=p@chr12:28022352..28022363,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=100 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr12:28022352..28022363,- | |||
|id=chr12:28022352..28022363,- | |||
|ontology_enrichment_celltype=CL:0000117!4.37e-09!23;CL:0000337!4.37e-09!23;CL:0002609!2.26e-07!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002609,4.13e-46,6;CL:0000117,2.34e-23,23;CL:0000337,2.34e-23,23;CL:0000540,2.59e-16,33;CL:0000047,2.59e-16,33;CL:0000031,2.59e-16,33;CL:0000404,2.59e-16,33;CL:0002608,1.04e-15,3;CL:0000120,2.85e-15,3;CL:0000393,8.25e-14,39;CL:0000211,8.25e-14,39;CL:0002319,1.59e-12,43;CL:0000221,3.05e-12,44;CL:0000133,3.05e-12,44;CL:0002321,1.15e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003056!1.34e-07!49;UBERON:0002346!6.97e-07!71;UBERON:0003075!6.97e-07!71;UBERON:0007284!6.97e-07!71 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000956,1.93e-13,21;UBERON:0001869,1.93e-13,21;UBERON:0000203,1.93e-13,21;UBERON:0003528,8.56e-10,29;UBERON:0002791,8.56e-10,29;UBERON:0001893,8.56e-10,29;UBERON:0002020,2.23e-08,34;UBERON:0001017,2.40e-07,73;UBERON:0002780,2.54e-07,39;UBERON:0001890,2.54e-07,39;UBERON:0006240,2.54e-07,39;UBERON:0001954,2.84e-07,7;UBERON:0003022,2.84e-07,7;UBERON:0002421,2.84e-07,7;UBERON:0000349,2.84e-07,7;UBERON:0002600,2.84e-07,7;UBERON:0001016,3.81e-07,75;UBERON:0003080,3.85e-07,40 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01158230429799,1.05798195854407,0,0,0,0,0,0,0,0,2.59224030771194,2.56511282830212,1.05162480675691,0,0.220868540951614,1.34739879136449,2.30029130443767,0,0,0,0,0.659431438650969,0.914876436024097,0.52091337055676,0,0,0,0,0.569486723196412,0.186399445825301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253359865475099,0,0,0,0,0,0.304465478312141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125654352112864,0,0,0,0,0,0,0,0,0,0,0.360124259610698,0.150704817835715,0.136072998302656,0.2562274405697,0.0937017245597288,0,0,0.189106080167819,0.175951124163949,0.219195732427575,0,0,0,0,0,0,0,0,0.234526059981096,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.617427674275707,0,0,0,0.232236671860439,0,0,0,0,0,0,0,0,0.19496408711912,0,0,0,0.189667900953082,0.342745537829186,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430846795465598,0,0,0,0,0,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0.356497378384721,0,0,0,0,0.36012218806262,0.258717367565509,0.214337035031592,0.177340233642274,0.178368817602071,0,0,0,0.21183207086382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0.209088296014469,0,0,0,0,0,0,0,0.149516546043979,0,0,0.129159823477731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0,0,0,0,0,0,0,0,0,1.03787347584177,0,0.170733605754134,0,0,0,0.222246727801615,0.206035057238894,0.64183841918363,0.252697211763798,0.25347929989024,0.188626341386076,0.0936415074698824,0.0640251524048693,0.287177344778066,0,0.231768651889711,0.38581844092741,0.412085900803307,0.147198920134397,0,0.177475806159338,0,0,0,0.0846146078916765,0.182927972872773,0.263069711437843,0.135804113845862,0.561142271657738,0,0,0.818462086339379,0,0.192906610981141,0.249810577937946,0,0,0,0,0 | |||
|short_description=p@chr12:28022352..28022363,- | |||
}} |
Revision as of 22:39, 12 September 2013
Short description: | p@chr12:28022352..28022363, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:28022352..28022363, - |
Coexpression cluster: | MCL_coexpression_mm9:100 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of cerebral cortex | 4.13e-46 | 6 |
CNS neuron (sensu Vertebrata) | 2.34e-23 | 23 |
neuroblast (sensu Vertebrata) | 2.34e-23 | 23 |
neuron | 2.59e-16 | 33 |
neuronal stem cell | 2.59e-16 | 33 |
neuroblast | 2.59e-16 | 33 |
electrically signaling cell | 2.59e-16 | 33 |
hippocampal neuron | 1.04e-15 | 3 |
granule cell | 2.85e-15 | 3 |
electrically responsive cell | 8.25e-14 | 39 |
electrically active cell | 8.25e-14 | 39 |
neural cell | 1.59e-12 | 43 |
ectodermal cell | 3.05e-12 | 44 |
neurectodermal cell | 3.05e-12 | 44 |
embryonic cell | 1.15e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
cerebral cortex | 1.93e-13 | 21 |
cerebral hemisphere | 1.93e-13 | 21 |
pallium | 1.93e-13 | 21 |
brain grey matter | 8.56e-10 | 29 |
regional part of telencephalon | 8.56e-10 | 29 |
telencephalon | 8.56e-10 | 29 |
gray matter | 2.23e-08 | 34 |
central nervous system | 2.40e-07 | 73 |
regional part of forebrain | 2.54e-07 | 39 |
forebrain | 2.54e-07 | 39 |
future forebrain | 2.54e-07 | 39 |
Ammon's horn | 2.84e-07 | 7 |
lobe parts of cerebral cortex | 2.84e-07 | 7 |
hippocampal formation | 2.84e-07 | 7 |
limbic system | 2.84e-07 | 7 |
limbic lobe | 2.84e-07 | 7 |
nervous system | 3.81e-07 | 75 |
anterior neural tube | 3.85e-07 | 40 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.