FFCP PHASE1:Mm9::chr5:138182337..138182413,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=243300|HGNC=|MCL_coexpression_id=22|UniProt=E9PXJ0|association_with_transcript=-7bp_to_ENSMUST00000149512_5end|description=CAGE_peak_1_at_6430598A04Rik_5end|id=chr5:138182337..138182413,-|ontology_enrichment_celltype=CL:0002319!9.80e-16!43;CL:0000221!1.43e-15!44;CL:0000133!1.43e-15!44;CL:0000117!1.86e-15!23;CL:0000337!1.86e-15!23;CL:0000540!6.50e-15!33;CL:0000047!6.50e-15!33;CL:0000031!6.50e-15!33;CL:0000404!6.50e-15!33;CL:0000055!4.13e-13!50;CL:0000393!6.47e-13!39;CL:0000211!6.47e-13!39|ontology_enrichment_celltype_v019_2=CL:0002319,1.15e-15,43;CL:0000117,1.44e-15,23;CL:0000337,1.44e-15,23;CL:0000221,1.66e-15,44;CL:0000133,1.66e-15,44;CL:0000540,5.07e-15,33;CL:0000047,5.07e-15,33;CL:0000031,5.07e-15,33;CL:0000404,5.07e-15,33;CL:0000393,5.24e-13,39;CL:0000211,5.24e-13,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.39e-32!73;UBERON:0005743!1.39e-32!73;UBERON:0000073!2.02e-31!75;UBERON:0001016!2.02e-31!75;UBERON:0002346!4.67e-28!71;UBERON:0003075!4.67e-28!71;UBERON:0007284!4.67e-28!71;UBERON:0001049!1.46e-27!52;UBERON:0005068!1.46e-27!52;UBERON:0006241!1.46e-27!52;UBERON:0007135!1.46e-27!52;UBERON:0004121!7.39e-27!102;UBERON:0000924!7.39e-27!102;UBERON:0006601!7.39e-27!102;UBERON:0000955!2.66e-25!50;UBERON:0006238!2.66e-25!50;UBERON:0002616!3.39e-25!49;UBERON:0000033!1.45e-24!63;UBERON:0007811!7.98e-24!86;UBERON:0000153!4.56e-23!94;UBERON:0003056!1.27e-22!49;UBERON:0003080!2.13e-21!40;UBERON:0002780!8.22e-21!39;UBERON:0001890!8.22e-21!39;UBERON:0006240!8.22e-21!39;UBERON:0002020!7.39e-20!34;UBERON:0002791!1.27e-16!29;UBERON:0003528!1.27e-16!29;UBERON:0001893!1.27e-16!29;UBERON:0000956!8.94e-12!21;UBERON:0001869!8.94e-12!21;UBERON:0000203!8.94e-12!21;UBERON:0000468!1.03e-09!333;UBERON:0002619!2.44e-09!17;UBERON:0000922!7.24e-08!328|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.77e-33,73;UBERON:0001016,1.87e-31,75;UBERON:0002346,1.79e-29,64;UBERON:0003075,1.79e-29,64;UBERON:0007284,1.79e-29,64;UBERON:0000073,6.37e-29,54;UBERON:0001049,8.96e-28,52;UBERON:0005068,8.96e-28,52;UBERON:0006241,8.96e-28,52;UBERON:0007135,8.96e-28,52;UBERON:0004121,5.62e-27,95;UBERON:0000924,5.62e-27,95;UBERON:0006601,5.62e-27,95;UBERON:0000955,6.86e-24,47;UBERON:0006238,6.86e-24,47;UBERON:0002616,8.66e-24,46;UBERON:0010371,1.61e-23,73;UBERON:0003056,8.56e-23,49;UBERON:0003080,1.47e-21,40;UBERON:0002780,5.74e-21,39;UBERON:0001890,5.74e-21,39;UBERON:0006240,5.74e-21,39;UBERON:0002020,5.25e-20,34;UBERON:0010314,6.96e-20,92;UBERON:0003528,9.60e-17,29;UBERON:0002791,9.60e-17,29;UBERON:0001893,9.60e-17,29;UBERON:0000956,7.39e-12,21;UBERON:0001869,7.39e-12,21;UBERON:0000203,7.39e-12,21;UBERON:0000922,2.00e-09,320;UBERON:0002619,2.11e-09,17|phase1_expression=4.00372117761985,4.53668029931169,4.54999239389536,3.62957053568196,5.50985302940982,1.84667199103079,0.467225281191051,0.516493293766305,0.422366166455,0.468129052643987,0,0.159544317990673,1.36960583944965,0.34968160967599,0.666219523631325,1.01237633694913,0,0,0.137114433605739,0,7.05859308253879,1.09220046320974,0.783599367416806,0.47997726838022,1.60586496747019,2.29692785646008,0.430761996159075,0.861884930743556,1.52018735565099,1.76421090831952,1.10865255327652,0,0,0,0,0,0,0,0,0,0,0,0,1.6366586336825,1.4192770370732,2.56965453026354,14.0830441982647,14.6076854774899,23.5064215525885,24.3037373842854,9.93903593540074,12.9377307928474,0.167782606057736,0,0,7.97504251711436,4.87106847895886,9.28209766099396,113.297218081375,79.3486468908049,104.58218157852,6.77689064138264,4.4464739805557,0.449949858640699,0.988866362566974,1.4209602298922,7.19040265244171,10.7581125490035,94.5649264253316,103.144536885412,99.0630567965009,52.5597811302999,49.2536846322098,80.2314734857949,78.8808226480085,91.0026598743921,16.5173821499083,30.1342117881043,28.417208652405,139.008147267624,146.837667981867,138.562956568098,32.1060448851588,29.2636557216474,34.0740092542287,56.8633169964179,53.5317519804627,82.2021556089576,0.908714319998209,4.83657984683427,0.579728977403356,0,0,0,0,0.448026887097336,1.26399978118577,1.1930122580464,1.81850203222008,1.41335829804136,4.78867627240714,1.28326477414318,10.1922095882658,7.11066703153331,2.38140145112336,2.78695852022608,2.02209778005913,1.48439043634778,0.776813650941515,3.71105347662062,6.7659277438793,10.3518262626128,5.07354093963329,6.48107354376277,8.23120949949934,1.13099932196708,6.17987419335935,1.59059292611903,0.884610551949874,2.75003644910596,1.54589062922275,1.93950101254089,0,15.2246014446005,20.3163305609051,2.29911349687732,0.11981512450592,0,0.254140454146129,29.0593840445356,16.0125210986519,95.497307605777,26.0736480288415,24.8043993610421,27.8435979709811,30.0146336675352,4.48093200941392,1.61729061793121,1.0108910337347,2.73574412652416,10.1493945510909,12.4147136394075,23.9482632641114,16.2761203262572,18.8461102649178,11.2740073850668,12.1812241927647,8.01980449290949,8.40715172438085,4.34943984385984,7.9178005873777,4.82230611340665,4.4487559876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| ||
|EntrezGene=243300 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|UniProt=E9PXJ0 | |||
|association_with_transcript=-7bp_to_ENSMUST00000149512_5end | |||
|description=CAGE_peak_1_at_6430598A04Rik_5end | |||
|id=chr5:138182337..138182413,- | |||
|ontology_enrichment_celltype=CL:0002319!9.80e-16!43;CL:0000221!1.43e-15!44;CL:0000133!1.43e-15!44;CL:0000117!1.86e-15!23;CL:0000337!1.86e-15!23;CL:0000540!6.50e-15!33;CL:0000047!6.50e-15!33;CL:0000031!6.50e-15!33;CL:0000404!6.50e-15!33;CL:0000055!4.13e-13!50;CL:0000393!6.47e-13!39;CL:0000211!6.47e-13!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.15e-15,43;CL:0000117,1.44e-15,23;CL:0000337,1.44e-15,23;CL:0000221,1.66e-15,44;CL:0000133,1.66e-15,44;CL:0000540,5.07e-15,33;CL:0000047,5.07e-15,33;CL:0000031,5.07e-15,33;CL:0000404,5.07e-15,33;CL:0000393,5.24e-13,39;CL:0000211,5.24e-13,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.39e-32!73;UBERON:0005743!1.39e-32!73;UBERON:0000073!2.02e-31!75;UBERON:0001016!2.02e-31!75;UBERON:0002346!4.67e-28!71;UBERON:0003075!4.67e-28!71;UBERON:0007284!4.67e-28!71;UBERON:0001049!1.46e-27!52;UBERON:0005068!1.46e-27!52;UBERON:0006241!1.46e-27!52;UBERON:0007135!1.46e-27!52;UBERON:0004121!7.39e-27!102;UBERON:0000924!7.39e-27!102;UBERON:0006601!7.39e-27!102;UBERON:0000955!2.66e-25!50;UBERON:0006238!2.66e-25!50;UBERON:0002616!3.39e-25!49;UBERON:0000033!1.45e-24!63;UBERON:0007811!7.98e-24!86;UBERON:0000153!4.56e-23!94;UBERON:0003056!1.27e-22!49;UBERON:0003080!2.13e-21!40;UBERON:0002780!8.22e-21!39;UBERON:0001890!8.22e-21!39;UBERON:0006240!8.22e-21!39;UBERON:0002020!7.39e-20!34;UBERON:0002791!1.27e-16!29;UBERON:0003528!1.27e-16!29;UBERON:0001893!1.27e-16!29;UBERON:0000956!8.94e-12!21;UBERON:0001869!8.94e-12!21;UBERON:0000203!8.94e-12!21;UBERON:0000468!1.03e-09!333;UBERON:0002619!2.44e-09!17;UBERON:0000922!7.24e-08!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.77e-33,73;UBERON:0001016,1.87e-31,75;UBERON:0002346,1.79e-29,64;UBERON:0003075,1.79e-29,64;UBERON:0007284,1.79e-29,64;UBERON:0000073,6.37e-29,54;UBERON:0001049,8.96e-28,52;UBERON:0005068,8.96e-28,52;UBERON:0006241,8.96e-28,52;UBERON:0007135,8.96e-28,52;UBERON:0004121,5.62e-27,95;UBERON:0000924,5.62e-27,95;UBERON:0006601,5.62e-27,95;UBERON:0000955,6.86e-24,47;UBERON:0006238,6.86e-24,47;UBERON:0002616,8.66e-24,46;UBERON:0010371,1.61e-23,73;UBERON:0003056,8.56e-23,49;UBERON:0003080,1.47e-21,40;UBERON:0002780,5.74e-21,39;UBERON:0001890,5.74e-21,39;UBERON:0006240,5.74e-21,39;UBERON:0002020,5.25e-20,34;UBERON:0010314,6.96e-20,92;UBERON:0003528,9.60e-17,29;UBERON:0002791,9.60e-17,29;UBERON:0001893,9.60e-17,29;UBERON:0000956,7.39e-12,21;UBERON:0001869,7.39e-12,21;UBERON:0000203,7.39e-12,21;UBERON:0000922,2.00e-09,320;UBERON:0002619,2.11e-09,17 | |||
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| |||
|short_description=p1@6430598A04Rik | |||
}} |
Revision as of 06:47, 14 September 2013
Short description: | p1@6430598A04Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_6430598A04Rik_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | -7bp_to_ENSMUST00000149512_5end |
EntrezGene: | 6430598A04Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.15e-15 | 43 |
CNS neuron (sensu Vertebrata) | 1.44e-15 | 23 |
neuroblast (sensu Vertebrata) | 1.44e-15 | 23 |
ectodermal cell | 1.66e-15 | 44 |
neurectodermal cell | 1.66e-15 | 44 |
neuron | 5.07e-15 | 33 |
neuronal stem cell | 5.07e-15 | 33 |
neuroblast | 5.07e-15 | 33 |
electrically signaling cell | 5.07e-15 | 33 |
electrically responsive cell | 5.24e-13 | 39 |
electrically active cell | 5.24e-13 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 7.77e-33 | 73 |
nervous system | 1.87e-31 | 75 |
neurectoderm | 1.79e-29 | 64 |
neural plate | 1.79e-29 | 64 |
presumptive neural plate | 1.79e-29 | 64 |
regional part of nervous system | 6.37e-29 | 54 |
neural tube | 8.96e-28 | 52 |
neural rod | 8.96e-28 | 52 |
future spinal cord | 8.96e-28 | 52 |
neural keel | 8.96e-28 | 52 |
ectoderm-derived structure | 5.62e-27 | 95 |
ectoderm | 5.62e-27 | 95 |
presumptive ectoderm | 5.62e-27 | 95 |
brain | 6.86e-24 | 47 |
future brain | 6.86e-24 | 47 |
regional part of brain | 8.66e-24 | 46 |
ecto-epithelium | 1.61e-23 | 73 |
pre-chordal neural plate | 8.56e-23 | 49 |
anterior neural tube | 1.47e-21 | 40 |
regional part of forebrain | 5.74e-21 | 39 |
forebrain | 5.74e-21 | 39 |
future forebrain | 5.74e-21 | 39 |
gray matter | 5.25e-20 | 34 |
structure with developmental contribution from neural crest | 6.96e-20 | 92 |
brain grey matter | 9.60e-17 | 29 |
regional part of telencephalon | 9.60e-17 | 29 |
telencephalon | 9.60e-17 | 29 |
cerebral cortex | 7.39e-12 | 21 |
cerebral hemisphere | 7.39e-12 | 21 |
pallium | 7.39e-12 | 21 |
embryo | 2.00e-09 | 320 |
regional part of cerebral cortex | 2.11e-09 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.