FFCP PHASE1:Mm9::chr15:84818388..84818448,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=223739|HGNC=|MCL_coexpression_id=247|UniProt=Q3UE31,E9Q1W1,B1APX2|association_with_transcript=0bp_to_ENSMUST00000047144,ENSMUST00000143585,ENSMUST00000165743,NM_001033273,uc007xcr.1_5end|description=CAGE_peak_1_at_5031439G07Rik_5end|id=chr15:84818388..84818448,-|ontology_enrichment_celltype=CL:0000393!1.98e-11!39;CL:0000211!1.98e-11!39;CL:0000540!2.19e-11!33;CL:0000047!2.19e-11!33;CL:0000031!2.19e-11!33;CL:0000404!2.19e-11!33;CL:0000117!3.55e-11!23;CL:0000337!3.55e-11!23;CL:0002319!1.58e-10!43;CL:0000221!2.14e-10!44;CL:0000133!2.14e-10!44;CL:0000055!3.44e-10!50;CL:0000034!7.37e-07!97|ontology_enrichment_celltype_v019_2=CL:0000393,1.98e-11,39;CL:0000211,1.98e-11,39;CL:0000540,2.19e-11,33;CL:0000047,2.19e-11,33;CL:0000031,2.19e-11,33;CL:0000404,2.19e-11,33;CL:0000117,3.55e-11,23;CL:0000337,3.55e-11,23;CL:0002319,1.58e-10,43;CL:0000221,2.14e-10,44;CL:0000133,2.14e-10,44;CL:0000034,7.37e-07,97|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!1.01e-16!102;UBERON:0000924!1.01e-16!102;UBERON:0006601!1.01e-16!102;UBERON:0000073!5.38e-16!75;UBERON:0001016!5.38e-16!75;UBERON:0001017!8.73e-15!73;UBERON:0005743!8.73e-15!73;UBERON:0001049!3.56e-10!52;UBERON:0005068!3.56e-10!52;UBERON:0006241!3.56e-10!52;UBERON:0007135!3.56e-10!52;UBERON:0002020!6.35e-10!34;UBERON:0000033!6.38e-10!63;UBERON:0000955!1.80e-09!50;UBERON:0006238!1.80e-09!50;UBERON:0002616!2.74e-09!49;UBERON:0002346!6.51e-09!71;UBERON:0003075!6.51e-09!71;UBERON:0007284!6.51e-09!71;UBERON:0003056!4.24e-08!49;UBERON:0002791!4.69e-08!29;UBERON:0003528!4.69e-08!29;UBERON:0001893!4.69e-08!29;UBERON:0003080!3.54e-07!40|ontology_enrichment_uberon_v019_2=UBERON:0004121,8.07e-19,95;UBERON:0000924,8.07e-19,95;UBERON:0006601,8.07e-19,95;UBERON:0001016,5.38e-16,75;UBERON:0001017,8.73e-15,73;UBERON:0010371,1.80e-12,73;UBERON:0000073,4.00e-11,54;UBERON:0002346,1.10e-10,64;UBERON:0003075,1.10e-10,64;UBERON:0007284,1.10e-10,64;UBERON:0001049,3.56e-10,52;UBERON:0005068,3.56e-10,52;UBERON:0006241,3.56e-10,52;UBERON:0007135,3.56e-10,52;UBERON:0002020,6.35e-10,34;UBERON:0003056,4.24e-08,49;UBERON:0000955,4.58e-08,47;UBERON:0006238,4.58e-08,47;UBERON:0003528,4.69e-08,29;UBERON:0002791,4.69e-08,29;UBERON:0001893,4.69e-08,29;UBERON:0002616,6.89e-08,46;UBERON:0003080,3.54e-07,40|phase1_expression=18.5772662641561,30.7098358722638,30.0299497997094,42.647453794263,40.0716583957078,27.364321321638,22.660426137766,10.7172358456508,22.1038293778117,20.8317428426574,4.79410311031414,7.0199499915896,8.9024379564227,7.86783621770977,9.66018309265422,10.1237633694913,5.59649502502517,45.5842828942653,46.3446785587397,41.1657962244089,21.941168858976,34.0567962619037,27.4259778595882,14.8792953197868,18.5821517664408,35.6023817751313,29.7225777349762,28.0112602491656,16.7220609121609,11.8454160987167,21.7295900442199,20.9560122241678,15.3766196896143,0,14.731432607315,9.80784407615105,15.9252097884648,41.4346314429539,37.5040965371424,27.2232346866375,51.7643709467293,51.2284113718834,43.6959317728038,20.6470781479947,29.0951792600007,27.7155595764139,21.1245662973971,11.9913836009246,16.2567775223509,10.4992145500113,18.0582483896718,18.6878333674463,35.4021298781824,10.8804321301702,6.38578218370682,24.439646423415,23.7822755149168,21.1425557833751,41.2725580153579,65.06589045046,34.2268957893337,43.3721001048489,26.6788438833342,154.33280151376,146.352221659912,184.724829885986,67.4100248666411,60.7064922408056,36.4987435325841,40.7717933761706,43.7475919610875,50.845875223877,41.3024171579517,35.2773501739068,35.271133334711,25.7381260250806,68.271846219621,51.713371924501,58.5240891706288,52.7545150920775,48.9458893272892,46.8822033501084,75.6585927293742,61.3411244934531,54.5489744563212,36.5339445987348,33.0302299453919,39.8894814066143,98.9741346864716,89.7790134068612,13.9134954576805,12.9063581547208,39.4383373550495,18.8896117073236,12.3457519315057,17.0250217096988,26.4035509847693,25.5645483867087,20.7828803682295,23.6737514921928,21.2673563862788,14.115912515575,10.1922095882658,14.2213340630666,9.95858788651585,10.8944742154292,6.0662933401774,23.7502469815645,15.018397251536,15.5864246018066,23.2470337866622,17.0500667854799,20.2941637585331,16.5794904607885,16.5800077061344,14.0746582289237,15.3260879995312,17.7857209011491,38.0382537338446,28.470965590744,27.3843482890888,23.2740121504907,20.5030937339934,27.2286141220739,28.4847521266299,16.0937944781413,27.9169240098794,11.9980546198682,22.1102195107133,64.4099749440738,48.952564501593,45.7381841690826,36.1554585999935,36.0558794835766,63.3753535906658,62.3006450180189,26.1727165095313,26.0010568575094,14.6579199891531,146.888415408759,17.6963802429277,25.749035696549,22.5077662256687,21.8521985861787,23.4045557080568,24.0853794135518,29.0475346135159,35.4423617912451,15.5208954911646,16.4522289746003,17.7710635405588,19.5084201860542,15.2925987074079,22.2881386574187,25.311202778177,14.7285357445685,6.31991868581911,8.74982884190032,24.43806094802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| ||
|EntrezGene=223739 | |||
|HGNC= | |||
|MCL_coexpression_id=247 | |||
|UniProt=Q3UE31,E9Q1W1,B1APX2 | |||
|association_with_transcript=0bp_to_ENSMUST00000047144,ENSMUST00000143585,ENSMUST00000165743,NM_001033273,uc007xcr.1_5end | |||
|description=CAGE_peak_1_at_5031439G07Rik_5end | |||
|id=chr15:84818388..84818448,- | |||
|ontology_enrichment_celltype=CL:0000393!1.98e-11!39;CL:0000211!1.98e-11!39;CL:0000540!2.19e-11!33;CL:0000047!2.19e-11!33;CL:0000031!2.19e-11!33;CL:0000404!2.19e-11!33;CL:0000117!3.55e-11!23;CL:0000337!3.55e-11!23;CL:0002319!1.58e-10!43;CL:0000221!2.14e-10!44;CL:0000133!2.14e-10!44;CL:0000055!3.44e-10!50;CL:0000034!7.37e-07!97 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,1.98e-11,39;CL:0000211,1.98e-11,39;CL:0000540,2.19e-11,33;CL:0000047,2.19e-11,33;CL:0000031,2.19e-11,33;CL:0000404,2.19e-11,33;CL:0000117,3.55e-11,23;CL:0000337,3.55e-11,23;CL:0002319,1.58e-10,43;CL:0000221,2.14e-10,44;CL:0000133,2.14e-10,44;CL:0000034,7.37e-07,97 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.01e-16!102;UBERON:0000924!1.01e-16!102;UBERON:0006601!1.01e-16!102;UBERON:0000073!5.38e-16!75;UBERON:0001016!5.38e-16!75;UBERON:0001017!8.73e-15!73;UBERON:0005743!8.73e-15!73;UBERON:0001049!3.56e-10!52;UBERON:0005068!3.56e-10!52;UBERON:0006241!3.56e-10!52;UBERON:0007135!3.56e-10!52;UBERON:0002020!6.35e-10!34;UBERON:0000033!6.38e-10!63;UBERON:0000955!1.80e-09!50;UBERON:0006238!1.80e-09!50;UBERON:0002616!2.74e-09!49;UBERON:0002346!6.51e-09!71;UBERON:0003075!6.51e-09!71;UBERON:0007284!6.51e-09!71;UBERON:0003056!4.24e-08!49;UBERON:0002791!4.69e-08!29;UBERON:0003528!4.69e-08!29;UBERON:0001893!4.69e-08!29;UBERON:0003080!3.54e-07!40 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,8.07e-19,95;UBERON:0000924,8.07e-19,95;UBERON:0006601,8.07e-19,95;UBERON:0001016,5.38e-16,75;UBERON:0001017,8.73e-15,73;UBERON:0010371,1.80e-12,73;UBERON:0000073,4.00e-11,54;UBERON:0002346,1.10e-10,64;UBERON:0003075,1.10e-10,64;UBERON:0007284,1.10e-10,64;UBERON:0001049,3.56e-10,52;UBERON:0005068,3.56e-10,52;UBERON:0006241,3.56e-10,52;UBERON:0007135,3.56e-10,52;UBERON:0002020,6.35e-10,34;UBERON:0003056,4.24e-08,49;UBERON:0000955,4.58e-08,47;UBERON:0006238,4.58e-08,47;UBERON:0003528,4.69e-08,29;UBERON:0002791,4.69e-08,29;UBERON:0001893,4.69e-08,29;UBERON:0002616,6.89e-08,46;UBERON:0003080,3.54e-07,40 | |||
|phase1_expression=18.5772662641561,30.7098358722638,30.0299497997094,42.647453794263,40.0716583957078,27.364321321638,22.660426137766,10.7172358456508,22.1038293778117,20.8317428426574,4.79410311031414,7.0199499915896,8.9024379564227,7.86783621770977,9.66018309265422,10.1237633694913,5.59649502502517,45.5842828942653,46.3446785587397,41.1657962244089,21.941168858976,34.0567962619037,27.4259778595882,14.8792953197868,18.5821517664408,35.6023817751313,29.7225777349762,28.0112602491656,16.7220609121609,11.8454160987167,21.7295900442199,20.9560122241678,15.3766196896143,0,14.731432607315,9.80784407615105,15.9252097884648,41.4346314429539,37.5040965371424,27.2232346866375,51.7643709467293,51.2284113718834,43.6959317728038,20.6470781479947,29.0951792600007,27.7155595764139,21.1245662973971,11.9913836009246,16.2567775223509,10.4992145500113,18.0582483896718,18.6878333674463,35.4021298781824,10.8804321301702,6.38578218370682,24.439646423415,23.7822755149168,21.1425557833751,41.2725580153579,65.06589045046,34.2268957893337,43.3721001048489,26.6788438833342,154.33280151376,146.352221659912,184.724829885986,67.4100248666411,60.7064922408056,36.4987435325841,40.7717933761706,43.7475919610875,50.845875223877,41.3024171579517,35.2773501739068,35.271133334711,25.7381260250806,68.271846219621,51.713371924501,58.5240891706288,52.7545150920775,48.9458893272892,46.8822033501084,75.6585927293742,61.3411244934531,54.5489744563212,36.5339445987348,33.0302299453919,39.8894814066143,98.9741346864716,89.7790134068612,13.9134954576805,12.9063581547208,39.4383373550495,18.8896117073236,12.3457519315057,17.0250217096988,26.4035509847693,25.5645483867087,20.7828803682295,23.6737514921928,21.2673563862788,14.115912515575,10.1922095882658,14.2213340630666,9.95858788651585,10.8944742154292,6.0662933401774,23.7502469815645,15.018397251536,15.5864246018066,23.2470337866622,17.0500667854799,20.2941637585331,16.5794904607885,16.5800077061344,14.0746582289237,15.3260879995312,17.7857209011491,38.0382537338446,28.470965590744,27.3843482890888,23.2740121504907,20.5030937339934,27.2286141220739,28.4847521266299,16.0937944781413,27.9169240098794,11.9980546198682,22.1102195107133,64.4099749440738,48.952564501593,45.7381841690826,36.1554585999935,36.0558794835766,63.3753535906658,62.3006450180189,26.1727165095313,26.0010568575094,14.6579199891531,146.888415408759,17.6963802429277,25.749035696549,22.5077662256687,21.8521985861787,23.4045557080568,24.0853794135518,29.0475346135159,35.4423617912451,15.5208954911646,16.4522289746003,17.7710635405588,19.5084201860542,15.2925987074079,22.2881386574187,25.311202778177,14.7285357445685,6.31991868581911,8.74982884190032,24.438060948021,10.5634143993106,12.8989332989603,11.1638478105829,9.94327889457883,9.83821158737019,10.0273623376796,7.67362017676346,14.2184902741798,10.0418194435766,13.9875872426458,12.6408947340903,13.7816976227955,18.4211984155919,18.0031094538662,16.238976670005,39.74480027862,41.4705587888516,25.7726650727362,11.9002754998595,14.0770245353254,16.0243303583703,19.0723842756698,20.7734030362043,21.7930482967973,24.158654516295,22.7773949541366,30.963403488114,25.3848560888272,24.2726895890204,25.930223586843,18.8752075817387,14.2651112917298,19.1175622324193,11.9490777600441,13.1385789501188,14.6520056375005,14.8665469327079,12.9948166402309,17.9547698919216,17.5797573205435,12.8420828742254,18.2118524295995,22.5816809976895,28.4594522003663,3.50374722003798,7.66580080941492,8.99448449539415,8.11440485554012,12.5412123071257,13.2405442926338,8.34318798607351,13.2950885955529,7.68771956926628,12.9391385874619,22.3284568601102,19.0342980599882,22.9846778931872,15.4281775628844,23.639732546805,19.0295785871603,15.7277871769502,13.5260930446881,15.6165478913173,12.6732734075791,13.7355131102289,10.2358765580986,14.8301572371927,18.9162172927429,17.717175171902,20.8885746941308,19.99132439532,22.1036776788346,18.0811323226889,165.870412333199,135.432515270859,45.7340773907704,21.7990029580739,80.1147444039082,79.586735196106,24.0984369703713,42.1626448431303,19.5615096038079,17.9601822376454,22.1886099664783,53.5290107413717,47.6789162536323,59.4460714656548,24.6934528021686,24.5494920645502,28.4607200121497,27.3123118958536,25.9750355931132,28.1343653794263,28.830991805583,23.9206678310176,13.2745138339963,15.7807413500738,15.4185014052023,9.9960692270626,10.6308681437078,13.2197113615889,24.8091161441492,17.4496190149203,18.8943610543902,14.5376908650475,4.21674434299995,12.3762651897824,12.2558258071364,13.6846431463796,20.6973894052407,23.5770738534752,14.7192393923087,22.2961022002588,20.404078554663,18.8768268451052,51.6277757740163,40.6717576058535,9.48272111636336,35.1207718765353,24.7040572844735,31.72459851221,56.3437463694804,70.0881641911412,19.8206968908299,88.4478690590131,19.4792804109552,22.289781740028,18.5194527369712,11.8672127912955,16.403307326523,21.9627046278262,31.4460095488632,23.2319410857272,32.7533937916484,15.2747298882418,17.8729836373341,20.128627245558,16.416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| |||
|short_description=p1@5031439G07Rik | |||
}} |
Revision as of 11:27, 13 September 2013
Short description: | p1@5031439G07Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_5031439G07Rik_5end |
Coexpression cluster: | MCL_coexpression_mm9:247 |
Association with transcript: | 0bp_to_ENSMUST00000047144, ENSMUST00000143585, ENSMUST00000165743, NM_001033273, uc007xcr.1_5end |
EntrezGene: | 5031439G07Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 1.98e-11 | 39 |
electrically active cell | 1.98e-11 | 39 |
neuron | 2.19e-11 | 33 |
neuronal stem cell | 2.19e-11 | 33 |
neuroblast | 2.19e-11 | 33 |
electrically signaling cell | 2.19e-11 | 33 |
CNS neuron (sensu Vertebrata) | 3.55e-11 | 23 |
neuroblast (sensu Vertebrata) | 3.55e-11 | 23 |
neural cell | 1.58e-10 | 43 |
ectodermal cell | 2.14e-10 | 44 |
neurectodermal cell | 2.14e-10 | 44 |
stem cell | 7.37e-07 | 97 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 8.07e-19 | 95 |
ectoderm | 8.07e-19 | 95 |
presumptive ectoderm | 8.07e-19 | 95 |
nervous system | 5.38e-16 | 75 |
central nervous system | 8.73e-15 | 73 |
ecto-epithelium | 1.80e-12 | 73 |
regional part of nervous system | 4.00e-11 | 54 |
neurectoderm | 1.10e-10 | 64 |
neural plate | 1.10e-10 | 64 |
presumptive neural plate | 1.10e-10 | 64 |
neural tube | 3.56e-10 | 52 |
neural rod | 3.56e-10 | 52 |
future spinal cord | 3.56e-10 | 52 |
neural keel | 3.56e-10 | 52 |
gray matter | 6.35e-10 | 34 |
pre-chordal neural plate | 4.24e-08 | 49 |
brain | 4.58e-08 | 47 |
future brain | 4.58e-08 | 47 |
brain grey matter | 4.69e-08 | 29 |
regional part of telencephalon | 4.69e-08 | 29 |
telencephalon | 4.69e-08 | 29 |
regional part of brain | 6.89e-08 | 46 |
anterior neural tube | 3.54e-07 | 40 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.