FFCP PHASE1:Mm9::chr5:71487004..71487101,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=14395|HGNC=|MCL_coexpression_id=1|UniProt=P26048,Q544G1|association_with_transcript=0bp_to_ENSMUST00000000572,NM_008066,uc008xqw.1,uc012dww.1_5end|description=CAGE_peak_1_at_Gabra2_5end|id=chr5:71487004..71487101,-|ontology_enrichment_celltype=CL:0000117!8.10e-14!23;CL:0000337!8.10e-14!23;CL:0000540!1.65e-11!33;CL:0000047!1.65e-11!33;CL:0000031!1.65e-11!33;CL:0000404!1.65e-11!33;CL:0000221!2.61e-10!44;CL:0000133!2.61e-10!44;CL:0002319!3.60e-10!43;CL:0000393!7.01e-08!39;CL:0000211!7.01e-08!39;CL:0000055!7.40e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,1.20e-17,23;CL:0000337,1.20e-17,23;CL:0000540,2.97e-10,33;CL:0000047,2.97e-10,33;CL:0000031,2.97e-10,33;CL:0000404,2.97e-10,33;CL:0000221,1.63e-08,44;CL:0000133,1.63e-08,44;CL:0002319,2.48e-08,43;CL:0000393,2.29e-07,39;CL:0000211,2.29e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!4.62e-26!75;UBERON:0001016!4.62e-26!75;UBERON:0001017!1.84e-25!73;UBERON:0005743!1.84e-25!73;UBERON:0002346!1.29e-23!71;UBERON:0003075!1.29e-23!71;UBERON:0007284!1.29e-23!71;UBERON:0001049!1.46e-23!52;UBERON:0005068!1.46e-23!52;UBERON:0006241!1.46e-23!52;UBERON:0007135!1.46e-23!52;UBERON:0000033!1.56e-23!63;UBERON:0004121!9.79e-23!102;UBERON:0000924!9.79e-23!102;UBERON:0006601!9.79e-23!102;UBERON:0000955!2.10e-22!50;UBERON:0006238!2.10e-22!50;UBERON:0002616!1.22e-21!49;UBERON:0003056!9.39e-21!49;UBERON:0002020!2.49e-19!34;UBERON:0003080!4.84e-18!40;UBERON:0002780!2.10e-17!39;UBERON:0001890!2.10e-17!39;UBERON:0006240!2.10e-17!39;UBERON:0002791!5.60e-16!29;UBERON:0003528!5.60e-16!29;UBERON:0001893!5.60e-16!29;UBERON:0007811!1.38e-12!86;UBERON:0000153!2.11e-12!94;UBERON:0000956!3.10e-11!21;UBERON:0001869!3.10e-11!21;UBERON:0000203!3.10e-11!21;UBERON:0002619!1.65e-09!17;UBERON:0002021!8.99e-08!10;UBERON:0000411!8.99e-08!10;UBERON:0001950!8.99e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0002346,7.56e-29,64;UBERON:0003075,7.56e-29,64;UBERON:0007284,7.56e-29,64;UBERON:0000073,2.05e-28,54;UBERON:0001049,2.09e-26,52;UBERON:0005068,2.09e-26,52;UBERON:0006241,2.09e-26,52;UBERON:0007135,2.09e-26,52;UBERON:0001016,1.06e-24,75;UBERON:0002020,2.01e-24,34;UBERON:0001017,6.01e-24,73;UBERON:0010371,1.89e-23,73;UBERON:0004121,2.19e-23,95;UBERON:0000924,2.19e-23,95;UBERON:0006601,2.19e-23,95;UBERON:0003056,2.51e-23,49;UBERON:0000955,4.57e-22,47;UBERON:0006238,4.57e-22,47;UBERON:0002616,3.91e-21,46;UBERON:0003528,4.96e-20,29;UBERON:0002791,4.96e-20,29;UBERON:0001893,4.96e-20,29;UBERON:0003080,9.73e-20,40;UBERON:0002780,6.19e-19,39;UBERON:0001890,6.19e-19,39;UBERON:0006240,6.19e-19,39;UBERON:0010314,1.59e-15,92;UBERON:0000956,8.00e-14,21;UBERON:0001869,8.00e-14,21;UBERON:0000203,8.00e-14,21;UBERON:0002619,1.47e-11,17;UBERON:0002021,1.02e-09,10;UBERON:0000411,1.02e-09,10;UBERON:0001950,1.02e-09,10;UBERON:0002420,1.97e-07,8;UBERON:0007245,1.97e-07,8;UBERON:0010009,1.97e-07,8;UBERON:0010011,1.97e-07,8;UBERON:0000454,1.97e-07,8;UBERON:0003076,3.53e-07,12;UBERON:0003057,3.53e-07,12|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137114433605739,0,16.0731818385522,0,0,0,0.45881856213434,0,0,0,0.190023419456374,0.252030129759931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.65407546914134,0.219686182734472,1.74986909166855,0.139986421625363,1.43752564364972,0,0,0,0,0.286533439938757,0,14.566785181891,19.5726662330652,16.4796164911607,0,0,0,0,0,0.599200221036809,0,8.91730665852908,7.56033254657468,7.78202357000113,39.4198358477249,27.6085676189517,10.4117179332711,3.54628242767475,8.27296907949019,63.8672109796454,79.6768989651571,92.3175264870023,18.3321939944969,19.212405156506,24.4829284161677,34.0603258781685,70.9080888639917,93.8181241349614,96.0489188644157,112.473627831291,21.063137378259,1.66597625333005,5.66786700800891,0,0,0,0.539703191637817,0,0,4.63466586434781,0,0,0,1.40843419776681,0,0,0,0,0,0,3.65388415100992,3.10725460376606,0,0.346970653532272,0,0.461230994512117,0.150722640552623,0.587943535678524,0.251333182659351,0,0.144599356919912,0,0.323533699894818,0,0,0,27.2286141220739,19.0596503200244,0,0,0,0,36.5489160147767,37.972550033946,10.6806199295935,32.678972196148,31.1972857943003,34.0772393077679,35.3685953487712,2.85150218780886,0,0.252722758433675,2.94618598241064,2.21204753036596,1.37941262660084,1.80062129805349,5.42537344208574,5.51095643125756,14.3487366719032,8.33945348581587,10.3481348295606,0.215567992932842,0.378212160335639,0.879755620819744,0.43839146485515,0.278047249225598,0,0.823128545631774,1.39323986772945,0,0,0,0.207125772535502,0.234526059981096,1.44049649168812,1.18372367792605,0.196764231747404,0.462801338662135,0,0.268273401399619,0,0,0,0,0.146199987425332,0,0,59.9326353407763,48.0564539811258,0,0,0.853153002140936,2.32236671860439,2.83508414908605,1.00841762311671,3.33567065767305,1.33157938278791,0,0.329397909448022,0.251335208800269,0,0.19496408711912,0.898819408654221,0,0,0.189667900953082,1.37098215131675,2.25415471346161,1.62921062276251,2.13347735884388,0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| ||
|EntrezGene=14395 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=P26048,Q544G1 | |||
|association_with_transcript=0bp_to_ENSMUST00000000572,NM_008066,uc008xqw.1,uc012dww.1_5end | |||
|description=CAGE_peak_1_at_Gabra2_5end | |||
|id=chr5:71487004..71487101,- | |||
|ontology_enrichment_celltype=CL:0000117!8.10e-14!23;CL:0000337!8.10e-14!23;CL:0000540!1.65e-11!33;CL:0000047!1.65e-11!33;CL:0000031!1.65e-11!33;CL:0000404!1.65e-11!33;CL:0000221!2.61e-10!44;CL:0000133!2.61e-10!44;CL:0002319!3.60e-10!43;CL:0000393!7.01e-08!39;CL:0000211!7.01e-08!39;CL:0000055!7.40e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.20e-17,23;CL:0000337,1.20e-17,23;CL:0000540,2.97e-10,33;CL:0000047,2.97e-10,33;CL:0000031,2.97e-10,33;CL:0000404,2.97e-10,33;CL:0000221,1.63e-08,44;CL:0000133,1.63e-08,44;CL:0002319,2.48e-08,43;CL:0000393,2.29e-07,39;CL:0000211,2.29e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.62e-26!75;UBERON:0001016!4.62e-26!75;UBERON:0001017!1.84e-25!73;UBERON:0005743!1.84e-25!73;UBERON:0002346!1.29e-23!71;UBERON:0003075!1.29e-23!71;UBERON:0007284!1.29e-23!71;UBERON:0001049!1.46e-23!52;UBERON:0005068!1.46e-23!52;UBERON:0006241!1.46e-23!52;UBERON:0007135!1.46e-23!52;UBERON:0000033!1.56e-23!63;UBERON:0004121!9.79e-23!102;UBERON:0000924!9.79e-23!102;UBERON:0006601!9.79e-23!102;UBERON:0000955!2.10e-22!50;UBERON:0006238!2.10e-22!50;UBERON:0002616!1.22e-21!49;UBERON:0003056!9.39e-21!49;UBERON:0002020!2.49e-19!34;UBERON:0003080!4.84e-18!40;UBERON:0002780!2.10e-17!39;UBERON:0001890!2.10e-17!39;UBERON:0006240!2.10e-17!39;UBERON:0002791!5.60e-16!29;UBERON:0003528!5.60e-16!29;UBERON:0001893!5.60e-16!29;UBERON:0007811!1.38e-12!86;UBERON:0000153!2.11e-12!94;UBERON:0000956!3.10e-11!21;UBERON:0001869!3.10e-11!21;UBERON:0000203!3.10e-11!21;UBERON:0002619!1.65e-09!17;UBERON:0002021!8.99e-08!10;UBERON:0000411!8.99e-08!10;UBERON:0001950!8.99e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,7.56e-29,64;UBERON:0003075,7.56e-29,64;UBERON:0007284,7.56e-29,64;UBERON:0000073,2.05e-28,54;UBERON:0001049,2.09e-26,52;UBERON:0005068,2.09e-26,52;UBERON:0006241,2.09e-26,52;UBERON:0007135,2.09e-26,52;UBERON:0001016,1.06e-24,75;UBERON:0002020,2.01e-24,34;UBERON:0001017,6.01e-24,73;UBERON:0010371,1.89e-23,73;UBERON:0004121,2.19e-23,95;UBERON:0000924,2.19e-23,95;UBERON:0006601,2.19e-23,95;UBERON:0003056,2.51e-23,49;UBERON:0000955,4.57e-22,47;UBERON:0006238,4.57e-22,47;UBERON:0002616,3.91e-21,46;UBERON:0003528,4.96e-20,29;UBERON:0002791,4.96e-20,29;UBERON:0001893,4.96e-20,29;UBERON:0003080,9.73e-20,40;UBERON:0002780,6.19e-19,39;UBERON:0001890,6.19e-19,39;UBERON:0006240,6.19e-19,39;UBERON:0010314,1.59e-15,92;UBERON:0000956,8.00e-14,21;UBERON:0001869,8.00e-14,21;UBERON:0000203,8.00e-14,21;UBERON:0002619,1.47e-11,17;UBERON:0002021,1.02e-09,10;UBERON:0000411,1.02e-09,10;UBERON:0001950,1.02e-09,10;UBERON:0002420,1.97e-07,8;UBERON:0007245,1.97e-07,8;UBERON:0010009,1.97e-07,8;UBERON:0010011,1.97e-07,8;UBERON:0000454,1.97e-07,8;UBERON:0003076,3.53e-07,12;UBERON:0003057,3.53e-07,12 | |||
|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137114433605739,0,16.0731818385522,0,0,0,0.45881856213434,0,0,0,0.190023419456374,0.252030129759931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.65407546914134,0.219686182734472,1.74986909166855,0.139986421625363,1.43752564364972,0,0,0,0,0.286533439938757,0,14.566785181891,19.5726662330652,16.4796164911607,0,0,0,0,0,0.599200221036809,0,8.91730665852908,7.56033254657468,7.78202357000113,39.4198358477249,27.6085676189517,10.4117179332711,3.54628242767475,8.27296907949019,63.8672109796454,79.6768989651571,92.3175264870023,18.3321939944969,19.212405156506,24.4829284161677,34.0603258781685,70.9080888639917,93.8181241349614,96.0489188644157,112.473627831291,21.063137378259,1.66597625333005,5.66786700800891,0,0,0,0.539703191637817,0,0,4.63466586434781,0,0,0,1.40843419776681,0,0,0,0,0,0,3.65388415100992,3.10725460376606,0,0.346970653532272,0,0.461230994512117,0.150722640552623,0.587943535678524,0.251333182659351,0,0.144599356919912,0,0.323533699894818,0,0,0,27.2286141220739,19.0596503200244,0,0,0,0,36.5489160147767,37.972550033946,10.6806199295935,32.678972196148,31.1972857943003,34.0772393077679,35.3685953487712,2.85150218780886,0,0.252722758433675,2.94618598241064,2.21204753036596,1.37941262660084,1.80062129805349,5.42537344208574,5.51095643125756,14.3487366719032,8.33945348581587,10.3481348295606,0.215567992932842,0.378212160335639,0.879755620819744,0.43839146485515,0.278047249225598,0,0.823128545631774,1.39323986772945,0,0,0,0.207125772535502,0.234526059981096,1.44049649168812,1.18372367792605,0.196764231747404,0.462801338662135,0,0.268273401399619,0,0,0,0,0.146199987425332,0,0,59.9326353407763,48.0564539811258,0,0,0.853153002140936,2.32236671860439,2.83508414908605,1.00841762311671,3.33567065767305,1.33157938278791,0,0.329397909448022,0.251335208800269,0,0.19496408711912,0.898819408654221,0,0,0.189667900953082,1.37098215131675,2.25415471346161,1.62921062276251,2.13347735884388,0.98190147846446,0.316182685621286,0.147610147979602,0,0,0,0.500535317148282,0.196558995113203,0.224862112384854,0.202860121388503,0,0,0,0,0.274561413188081,0,0,0,0.252578877947112,0,0,0,0.37898282354097,0,0.339490171550376,0,0,0,0.195133647857799,0,0.44292937929755,0.159454768657487,0,0.172684981865896,0,1.50791283939272,0,0,0,42.2248051667893,32.4676371860403,0,0,0.631016438832513,0.390438744296638,1.50796378412959,0,0.445597348164788,0.283076530788832,0.404810701674894,0.876767573733936,0.395287777946524,71.9759748784848,0.567760340833074,1.24645922567079,2.28041743095006,0.329940245945071,0,0,0.302323556964751,0,0.295301892880773,0,0.516856586336442,0,0.712994756769443,0,0,0,21.7881347682424,0.720244376125241,0.258717367565509,0.857348140126369,1.59606210278046,1.24858172321449,2.30368628842969,0.608929898229199,0.469343416127421,0,0.661585194164886,0,0.968786560175433,0.72375509913787,0.119372344003136,0.328281799490123,0,62.8591773815628,0,0.412773735926445,0,0,0,0,0,0,0,0,0.790839983952838,1.62655573701479,1.18805874903981,0.836353184057875,0.436725127492355,0.674321731924103,0.330613822901344,0.26175594198403,0,0,0,0.149516546043979,0.496375471371293,0.583353565032143,0,0.506868376472335,0.234714477291508,1.17183946359555,0.104859344425711,0,0,0,0.608175645870493,0.308132871494482,0.129920822977795,0.179026695667481,0,0.240390899039938,0.147689527174577,0,0,0.100826185136841,0.194915761479505,0.192423683280659,0.233753804363138,0,0.221985953374065,0,0,0.386379188064381,0,0.183151624267265,0,0,54.2161768912384,31.7624413189952,40.6755814541972,53.9618992559179,50.0110239432569,62.6976934833451,24.9758325085768,55.3895079965791,54.8302314870888,51.2582708634302,1.14166082342594,5.98537310101547,4.95127456686989,3.64660075602441,2.51535795153579,4.59608771125035,6.00066165064361,10.0957178047058,9.30665707816264,7.07552192938633,8.61829619626815,6.22466926574051,6.9294715527713,7.55496798377458,7.00712721258482,13.8125170472091,5.91010062318763,5.20854895252004,6.59337441285291,8.09594060739185,10.6289468239479,7.27650805253284,5.48403236878838,8.72078499793971,7.24642229198046,7.95377314181759,6.95126296916536,9.99664903463803,7.06181391998481,10.1005608898393,7.23673610557462,5.61475549540712,6.13846564754534,7.7468420592983,4.24394544158511,5.49583271463481,4.21076895201735,3.86767897286937,1.3390183244819,1.54413993383661,2.31867835620421 | |||
|short_description=p1@Gabra2 | |||
}} |
Revision as of 07:57, 14 September 2013
Short description: | p1@Gabra2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Gabra2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000000572, NM_008066, uc008xqw.1, uc012dww.1_5end |
EntrezGene: | Gabra2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.20e-17 | 23 |
neuroblast (sensu Vertebrata) | 1.20e-17 | 23 |
neuron | 2.97e-10 | 33 |
neuronal stem cell | 2.97e-10 | 33 |
neuroblast | 2.97e-10 | 33 |
electrically signaling cell | 2.97e-10 | 33 |
ectodermal cell | 1.63e-08 | 44 |
neurectodermal cell | 1.63e-08 | 44 |
neural cell | 2.48e-08 | 43 |
electrically responsive cell | 2.29e-07 | 39 |
electrically active cell | 2.29e-07 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.