FFCP PHASE1:Mm9::chr9:123169894..123169921,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=72309|HGNC=|MCL_coexpression_id=1|UniProt=B2RTM1|association_with_transcript=0bp_to_ENSMUST00000068140,NM_001002267,uc009sgb.1_5end|description=CAGE_peak_2_at_Tmem158_5end|id=chr9:123169894..123169921,-|ontology_enrichment_celltype=CL:0002319!8.11e-17!43;CL:0000221!1.30e-16!44;CL:0000133!1.30e-16!44;CL:0000055!1.82e-15!50;CL:0000540!6.23e-14!33;CL:0000047!6.23e-14!33;CL:0000031!6.23e-14!33;CL:0000404!6.23e-14!33;CL:0000393!7.76e-13!39;CL:0000211!7.76e-13!39;CL:0000117!1.09e-11!23;CL:0000337!1.09e-11!23;CL:0002321!1.93e-09!70;CL:0000220!1.93e-09!70|ontology_enrichment_celltype_v019_2=CL:0002319,7.12e-17,43;CL:0000221,1.15e-16,44;CL:0000133,1.15e-16,44;CL:0000540,5.61e-14,33;CL:0000047,5.61e-14,33;CL:0000031,5.61e-14,33;CL:0000404,5.61e-14,33;CL:0000393,7.06e-13,39;CL:0000211,7.06e-13,39;CL:0000117,1.00e-11,23;CL:0000337,1.00e-11,23;CL:0002321,1.05e-09,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!3.87e-31!75;UBERON:0001016!3.87e-31!75;UBERON:0001017!5.32e-30!73;UBERON:0005743!5.32e-30!73;UBERON:0004121!3.18e-24!102;UBERON:0000924!3.18e-24!102;UBERON:0006601!3.18e-24!102;UBERON:0001049!2.73e-21!52;UBERON:0005068!2.73e-21!52;UBERON:0006241!2.73e-21!52;UBERON:0007135!2.73e-21!52;UBERON:0000955!3.90e-20!50;UBERON:0006238!3.90e-20!50;UBERON:0002616!1.65e-19!49;UBERON:0002346!9.66e-19!71;UBERON:0003075!9.66e-19!71;UBERON:0007284!9.66e-19!71;UBERON:0002020!1.51e-18!34;UBERON:0003080!1.13e-17!40;UBERON:0002780!3.32e-17!39;UBERON:0001890!3.32e-17!39;UBERON:0006240!3.32e-17!39;UBERON:0000033!1.67e-16!63;UBERON:0002791!9.08e-16!29;UBERON:0003528!9.08e-16!29;UBERON:0001893!9.08e-16!29;UBERON:0003056!7.03e-15!49;UBERON:0000956!1.80e-11!21;UBERON:0001869!1.80e-11!21;UBERON:0000203!1.80e-11!21;UBERON:0002619!5.00e-10!17;UBERON:0002021!7.72e-08!10;UBERON:0000411!7.72e-08!10;UBERON:0001950!7.72e-08!10;UBERON:0000153!8.20e-08!94;UBERON:0007811!2.55e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.01e-31,75;UBERON:0001017,4.18e-30,73;UBERON:0004121,1.52e-24,95;UBERON:0000924,1.52e-24,95;UBERON:0006601,1.52e-24,95;UBERON:0000073,1.69e-22,54;UBERON:0001049,2.31e-21,52;UBERON:0005068,2.31e-21,52;UBERON:0006241,2.31e-21,52;UBERON:0007135,2.31e-21,52;UBERON:0002346,2.03e-19,64;UBERON:0003075,2.03e-19,64;UBERON:0007284,2.03e-19,64;UBERON:0000955,6.48e-19,47;UBERON:0006238,6.48e-19,47;UBERON:0002020,1.30e-18,34;UBERON:0002616,2.70e-18,46;UBERON:0003080,9.83e-18,40;UBERON:0010371,1.07e-17,73;UBERON:0002780,2.90e-17,39;UBERON:0001890,2.90e-17,39;UBERON:0006240,2.90e-17,39;UBERON:0003528,8.05e-16,29;UBERON:0002791,8.05e-16,29;UBERON:0001893,8.05e-16,29;UBERON:0003056,9.51e-15,49;UBERON:0000956,1.65e-11,21;UBERON:0001869,1.65e-11,21;UBERON:0000203,1.65e-11,21;UBERON:0010314,4.07e-11,92;UBERON:0002619,4.66e-10,17;UBERON:0002021,7.32e-08,10;UBERON:0000411,7.32e-08,10;UBERON:0001950,7.32e-08,10|phase1_expression=6.56610273129655,5.23463111459042,3.18499467572675,1.20985684522732,3.50627010962443,3.69334398206158,3.50418960893289,8.00564605337773,4.08287294239834,4.21316147379588,2.22583358693156,2.71225340584144,1.02720437958723,1.04904482902797,1.33243904726265,0.404950534779652,0,0.157731082679119,0.411343300817216,0,4.08207792725135,0.893618560807968,0,0.639969691173627,2.75291137280604,3.44539178469012,1.29228598847722,3.01659725760245,0.570070258369122,0.504060259519861,2.88249663851896,10.1604907753541,6.1506478758457,0,1.44425809875637,1.49611180822643,1.63335485009895,0,0,0,0,0,0,7.1761186246079,6.38674666682942,4.22157529971868,46.1610893165343,3.48840250208714,5.4921545683618,3.11087838518853,5.45947044338914,7.18762821824858,0.167782606057736,0.725362142011344,0,1.02903774414379,2.29226751951005,3.09403255366465,17.1968991730658,19.5726662330652,18.3811107016792,10.165335962074,8.00365316500025,1.3498495759221,3.9554654502679,1.4209602298922,10.7856039786626,8.06858441175265,6.22137673850866,9.72042755988173,5.25812403378455,15.1395021734016,17.2277461942259,11.6366259254206,7.57179221044067,18.3843757322004,5.50579404996943,11.2364857514965,11.5204899942183,14.2437190748609,11.9848813119157,15.106487746146,7.53794097303729,14.069065250792,11.9182633265912,15.6153150301044,13.810053037513,16.4031512326265,7.04253597998612,18.9684615868032,3.18850937571846,2.58127163094416,3.39985666853875,0,0.649776417447669,0,1.96622188184453,0.511290967734173,0.779358013808606,0.70667914902068,3.38024207464033,2.56652954828636,0,0,5.41227602528035,4.81383744402687,4.54972000513305,1.59857431606684,1.29468941823586,2.3750742250372,3.29622120855658,2.43572382649713,4.15107895060905,4.6724018571313,5.29149182110672,2.63899841792318,2.47194967734374,2.02439099687876,0.884610551949874,2.75003644910596,2.20841518460394,1.45462575940567,5.59175283654366,3.51336956413857,4.60782754989601,1.27728527604296,1.55759661857696,1.19980546198682,1.52484272487678,10.6351353977424,71.3700940397057,37.3193425775207,30.7669046740329,28.1287003063364,22.648896856992,31.961528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| ||
|EntrezGene=72309 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=B2RTM1 | |||
|association_with_transcript=0bp_to_ENSMUST00000068140,NM_001002267,uc009sgb.1_5end | |||
|description=CAGE_peak_2_at_Tmem158_5end | |||
|id=chr9:123169894..123169921,- | |||
|ontology_enrichment_celltype=CL:0002319!8.11e-17!43;CL:0000221!1.30e-16!44;CL:0000133!1.30e-16!44;CL:0000055!1.82e-15!50;CL:0000540!6.23e-14!33;CL:0000047!6.23e-14!33;CL:0000031!6.23e-14!33;CL:0000404!6.23e-14!33;CL:0000393!7.76e-13!39;CL:0000211!7.76e-13!39;CL:0000117!1.09e-11!23;CL:0000337!1.09e-11!23;CL:0002321!1.93e-09!70;CL:0000220!1.93e-09!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,7.12e-17,43;CL:0000221,1.15e-16,44;CL:0000133,1.15e-16,44;CL:0000540,5.61e-14,33;CL:0000047,5.61e-14,33;CL:0000031,5.61e-14,33;CL:0000404,5.61e-14,33;CL:0000393,7.06e-13,39;CL:0000211,7.06e-13,39;CL:0000117,1.00e-11,23;CL:0000337,1.00e-11,23;CL:0002321,1.05e-09,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.87e-31!75;UBERON:0001016!3.87e-31!75;UBERON:0001017!5.32e-30!73;UBERON:0005743!5.32e-30!73;UBERON:0004121!3.18e-24!102;UBERON:0000924!3.18e-24!102;UBERON:0006601!3.18e-24!102;UBERON:0001049!2.73e-21!52;UBERON:0005068!2.73e-21!52;UBERON:0006241!2.73e-21!52;UBERON:0007135!2.73e-21!52;UBERON:0000955!3.90e-20!50;UBERON:0006238!3.90e-20!50;UBERON:0002616!1.65e-19!49;UBERON:0002346!9.66e-19!71;UBERON:0003075!9.66e-19!71;UBERON:0007284!9.66e-19!71;UBERON:0002020!1.51e-18!34;UBERON:0003080!1.13e-17!40;UBERON:0002780!3.32e-17!39;UBERON:0001890!3.32e-17!39;UBERON:0006240!3.32e-17!39;UBERON:0000033!1.67e-16!63;UBERON:0002791!9.08e-16!29;UBERON:0003528!9.08e-16!29;UBERON:0001893!9.08e-16!29;UBERON:0003056!7.03e-15!49;UBERON:0000956!1.80e-11!21;UBERON:0001869!1.80e-11!21;UBERON:0000203!1.80e-11!21;UBERON:0002619!5.00e-10!17;UBERON:0002021!7.72e-08!10;UBERON:0000411!7.72e-08!10;UBERON:0001950!7.72e-08!10;UBERON:0000153!8.20e-08!94;UBERON:0007811!2.55e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.01e-31,75;UBERON:0001017,4.18e-30,73;UBERON:0004121,1.52e-24,95;UBERON:0000924,1.52e-24,95;UBERON:0006601,1.52e-24,95;UBERON:0000073,1.69e-22,54;UBERON:0001049,2.31e-21,52;UBERON:0005068,2.31e-21,52;UBERON:0006241,2.31e-21,52;UBERON:0007135,2.31e-21,52;UBERON:0002346,2.03e-19,64;UBERON:0003075,2.03e-19,64;UBERON:0007284,2.03e-19,64;UBERON:0000955,6.48e-19,47;UBERON:0006238,6.48e-19,47;UBERON:0002020,1.30e-18,34;UBERON:0002616,2.70e-18,46;UBERON:0003080,9.83e-18,40;UBERON:0010371,1.07e-17,73;UBERON:0002780,2.90e-17,39;UBERON:0001890,2.90e-17,39;UBERON:0006240,2.90e-17,39;UBERON:0003528,8.05e-16,29;UBERON:0002791,8.05e-16,29;UBERON:0001893,8.05e-16,29;UBERON:0003056,9.51e-15,49;UBERON:0000956,1.65e-11,21;UBERON:0001869,1.65e-11,21;UBERON:0000203,1.65e-11,21;UBERON:0010314,4.07e-11,92;UBERON:0002619,4.66e-10,17;UBERON:0002021,7.32e-08,10;UBERON:0000411,7.32e-08,10;UBERON:0001950,7.32e-08,10 | |||
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| |||
|short_description=p2@Tmem158 | |||
}} |
Revision as of 17:16, 14 September 2013
Short description: | p2@Tmem158 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Tmem158_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000068140, NM_001002267, uc009sgb.1_5end |
EntrezGene: | Tmem158 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 7.12e-17 | 43 |
ectodermal cell | 1.15e-16 | 44 |
neurectodermal cell | 1.15e-16 | 44 |
neuron | 5.61e-14 | 33 |
neuronal stem cell | 5.61e-14 | 33 |
neuroblast | 5.61e-14 | 33 |
electrically signaling cell | 5.61e-14 | 33 |
electrically responsive cell | 7.06e-13 | 39 |
electrically active cell | 7.06e-13 | 39 |
CNS neuron (sensu Vertebrata) | 1.00e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.00e-11 | 23 |
embryonic cell | 1.05e-09 | 70 |
Ontology term | p-value | n |
---|---|---|
nervous system | 3.01e-31 | 75 |
central nervous system | 4.18e-30 | 73 |
ectoderm-derived structure | 1.52e-24 | 95 |
ectoderm | 1.52e-24 | 95 |
presumptive ectoderm | 1.52e-24 | 95 |
regional part of nervous system | 1.69e-22 | 54 |
neural tube | 2.31e-21 | 52 |
neural rod | 2.31e-21 | 52 |
future spinal cord | 2.31e-21 | 52 |
neural keel | 2.31e-21 | 52 |
neurectoderm | 2.03e-19 | 64 |
neural plate | 2.03e-19 | 64 |
presumptive neural plate | 2.03e-19 | 64 |
brain | 6.48e-19 | 47 |
future brain | 6.48e-19 | 47 |
gray matter | 1.30e-18 | 34 |
regional part of brain | 2.70e-18 | 46 |
anterior neural tube | 9.83e-18 | 40 |
ecto-epithelium | 1.07e-17 | 73 |
regional part of forebrain | 2.90e-17 | 39 |
forebrain | 2.90e-17 | 39 |
future forebrain | 2.90e-17 | 39 |
brain grey matter | 8.05e-16 | 29 |
regional part of telencephalon | 8.05e-16 | 29 |
telencephalon | 8.05e-16 | 29 |
pre-chordal neural plate | 9.51e-15 | 49 |
cerebral cortex | 1.65e-11 | 21 |
cerebral hemisphere | 1.65e-11 | 21 |
pallium | 1.65e-11 | 21 |
structure with developmental contribution from neural crest | 4.07e-11 | 92 |
regional part of cerebral cortex | 4.66e-10 | 17 |
occipital lobe | 7.32e-08 | 10 |
visual cortex | 7.32e-08 | 10 |
neocortex | 7.32e-08 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.