FFCP PHASE1:Mm9::chr2:65683890..65683907,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=77771|HGNC=|MCL_coexpression_id=1|UniProt=P59055|association_with_transcript=0bp_to_ENSMUST00000053910,ENSMUST00000139896_5end|description=CAGE_peak_1_at_Csrnp3_5end|id=chr2:65683890..65683907,+|ontology_enrichment_celltype=CL:0000117!6.65e-13!23;CL:0000337!6.65e-13!23;CL:0000540!2.65e-12!33;CL:0000047!2.65e-12!33;CL:0000031!2.65e-12!33;CL:0000404!2.65e-12!33;CL:0000393!7.77e-08!39;CL:0000211!7.77e-08!39;CL:0002319!1.40e-07!43;CL:0000221!1.70e-07!44;CL:0000133!1.70e-07!44|ontology_enrichment_celltype_v019_2=CL:0000117,4.89e-14,23;CL:0000337,4.89e-14,23;CL:0000540,7.11e-13,33;CL:0000047,7.11e-13,33;CL:0000031,7.11e-13,33;CL:0000404,7.11e-13,33;CL:0000393,8.00e-09,39;CL:0000211,8.00e-09,39;CL:0002319,7.00e-07,43;CL:0000221,8.25e-07,44;CL:0000133,8.25e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!1.53e-24!71;UBERON:0003075!1.53e-24!71;UBERON:0007284!1.53e-24!71;UBERON:0001017!3.28e-23!73;UBERON:0005743!3.28e-23!73;UBERON:0000033!1.69e-22!63;UBERON:0000073!1.73e-22!75;UBERON:0001016!1.73e-22!75;UBERON:0001049!6.77e-22!52;UBERON:0005068!6.77e-22!52;UBERON:0006241!6.77e-22!52;UBERON:0007135!6.77e-22!52;UBERON:0004121!1.99e-21!102;UBERON:0000924!1.99e-21!102;UBERON:0006601!1.99e-21!102;UBERON:0003056!5.39e-21!49;UBERON:0000955!5.76e-21!50;UBERON:0006238!5.76e-21!50;UBERON:0002616!3.36e-20!49;UBERON:0002020!7.46e-19!34;UBERON:0003080!4.46e-18!40;UBERON:0002780!2.33e-17!39;UBERON:0001890!2.33e-17!39;UBERON:0006240!2.33e-17!39;UBERON:0002791!3.99e-16!29;UBERON:0003528!3.99e-16!29;UBERON:0001893!3.99e-16!29;UBERON:0000153!2.03e-11!94;UBERON:0000956!3.09e-11!21;UBERON:0001869!3.09e-11!21;UBERON:0000203!3.09e-11!21;UBERON:0007811!4.97e-10!86;UBERON:0002619!1.21e-09!17;UBERON:0000468!2.28e-08!333;UBERON:0002021!4.25e-08!10;UBERON:0000411!4.25e-08!10;UBERON:0001950!4.25e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.97e-26,64;UBERON:0003075,2.97e-26,64;UBERON:0007284,2.97e-26,64;UBERON:0000073,1.17e-23,54;UBERON:0001017,1.35e-23,73;UBERON:0001049,2.26e-22,52;UBERON:0005068,2.26e-22,52;UBERON:0006241,2.26e-22,52;UBERON:0007135,2.26e-22,52;UBERON:0001016,3.71e-22,75;UBERON:0010371,5.49e-22,73;UBERON:0003056,1.65e-21,49;UBERON:0004121,1.66e-20,95;UBERON:0000924,1.66e-20,95;UBERON:0006601,1.66e-20,95;UBERON:0002020,1.33e-19,34;UBERON:0000955,1.68e-19,47;UBERON:0006238,1.68e-19,47;UBERON:0002616,1.08e-18,46;UBERON:0003080,2.72e-18,40;UBERON:0002780,1.61e-17,39;UBERON:0001890,1.61e-17,39;UBERON:0006240,1.61e-17,39;UBERON:0003528,1.29e-16,29;UBERON:0002791,1.29e-16,29;UBERON:0001893,1.29e-16,29;UBERON:0010314,7.32e-16,92;UBERON:0000956,2.73e-11,21;UBERON:0001869,2.73e-11,21;UBERON:0000203,2.73e-11,21;UBERON:0002619,1.57e-09,17;UBERON:0002021,9.40e-09,10;UBERON:0000411,9.40e-09,10;UBERON:0001950,9.40e-09,10|phase1_expression=5.12476310735341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.2902381082794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0.439372365468944,0.388859798148567,0,0,0,0,0,0,0,0,34.5961148069912,38.6163414868584,27.8885817542719,0,0,0,0,0,0,0.384218305321555,17.5235444801327,11.8805225731888,16.8259969081106,19.1386159550548,18.3320888989839,41.5243809338694,31.0539326099086,21.1420320920305,31.9336054898227,28.3465890549117,36.2511418484735,42.863043512313,44.9204330087831,55.2168172790166,19.5428099300967,43.3327209724394,37.1299742097649,37.4178303551558,45.2741944941147,36.7206908275842,0.151452386666368,0.68014404096107,0,0,0,0,0,0,1.26399978118577,0,0,0,1.12674735821344,0,0,0,0,0,0,1.59857431606684,0,0.148442139064825,4.51061849591953,2.74018930480927,2.30615497256059,2.26083960828934,3.52766121407114,0.251333182659351,0,0.289198713839823,0,5.50007289821191,4.19598885074748,8.727754556434,0,19.6163133997737,15.7085030110091,0.255457055208591,0,0,0,62.0133247135966,59.0175777636028,76.2721917325087,58.0573229442203,57.5359778993244,48.6224024269371,56.4599595475797,2.54598409625791,5.22509276562391,0.252722758433675,6.73413938836717,11.0602376518298,6.20735681970377,9.72335500948886,12.3577950625286,19.0502197623718,20.3700815252911,19.6773621575431,19.1440494346872,11.6406716183735,25.15110866232,17.067259043903,4.82230611340665,12.7901734643775,8.00979983000983,8.23128545631774,9.15557627365069,0,0,0,1.86413195281952,2.11073453982987,1.08037236876609,0.473489471170421,0.590292695242212,1.07986979021165,0.465067889500816,1.07309360559848,0.233530684734339,0,0,0.0810688095458557,0.146199987425332,0,0,58.2503157522632,63.9037642875356,0,0.264450566663544,9.81125952462076,10.4506502337197,4.63922860759536,1.61346819698674,2.44615848229357,1.33157938278791,0.474529061544512,0.823494773620054,1.50801125280162,1.1937388322469,1.55971269695296,0.898819408654221,0.216138049874694,0.199141273254367,1.32767530667157,5.02693455482807,2.25415471346161,3.66572390121566,3.10323979468201,2.94570443539338,2.90888070771584,0,0.470996183524124,0.246794327843601,0,0.83422552858047,0.982794975566015,0,0.40572024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| ||
|EntrezGene=77771 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=P59055 | |||
|association_with_transcript=0bp_to_ENSMUST00000053910,ENSMUST00000139896_5end | |||
|description=CAGE_peak_1_at_Csrnp3_5end | |||
|id=chr2:65683890..65683907,+ | |||
|ontology_enrichment_celltype=CL:0000117!6.65e-13!23;CL:0000337!6.65e-13!23;CL:0000540!2.65e-12!33;CL:0000047!2.65e-12!33;CL:0000031!2.65e-12!33;CL:0000404!2.65e-12!33;CL:0000393!7.77e-08!39;CL:0000211!7.77e-08!39;CL:0002319!1.40e-07!43;CL:0000221!1.70e-07!44;CL:0000133!1.70e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.89e-14,23;CL:0000337,4.89e-14,23;CL:0000540,7.11e-13,33;CL:0000047,7.11e-13,33;CL:0000031,7.11e-13,33;CL:0000404,7.11e-13,33;CL:0000393,8.00e-09,39;CL:0000211,8.00e-09,39;CL:0002319,7.00e-07,43;CL:0000221,8.25e-07,44;CL:0000133,8.25e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.53e-24!71;UBERON:0003075!1.53e-24!71;UBERON:0007284!1.53e-24!71;UBERON:0001017!3.28e-23!73;UBERON:0005743!3.28e-23!73;UBERON:0000033!1.69e-22!63;UBERON:0000073!1.73e-22!75;UBERON:0001016!1.73e-22!75;UBERON:0001049!6.77e-22!52;UBERON:0005068!6.77e-22!52;UBERON:0006241!6.77e-22!52;UBERON:0007135!6.77e-22!52;UBERON:0004121!1.99e-21!102;UBERON:0000924!1.99e-21!102;UBERON:0006601!1.99e-21!102;UBERON:0003056!5.39e-21!49;UBERON:0000955!5.76e-21!50;UBERON:0006238!5.76e-21!50;UBERON:0002616!3.36e-20!49;UBERON:0002020!7.46e-19!34;UBERON:0003080!4.46e-18!40;UBERON:0002780!2.33e-17!39;UBERON:0001890!2.33e-17!39;UBERON:0006240!2.33e-17!39;UBERON:0002791!3.99e-16!29;UBERON:0003528!3.99e-16!29;UBERON:0001893!3.99e-16!29;UBERON:0000153!2.03e-11!94;UBERON:0000956!3.09e-11!21;UBERON:0001869!3.09e-11!21;UBERON:0000203!3.09e-11!21;UBERON:0007811!4.97e-10!86;UBERON:0002619!1.21e-09!17;UBERON:0000468!2.28e-08!333;UBERON:0002021!4.25e-08!10;UBERON:0000411!4.25e-08!10;UBERON:0001950!4.25e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.97e-26,64;UBERON:0003075,2.97e-26,64;UBERON:0007284,2.97e-26,64;UBERON:0000073,1.17e-23,54;UBERON:0001017,1.35e-23,73;UBERON:0001049,2.26e-22,52;UBERON:0005068,2.26e-22,52;UBERON:0006241,2.26e-22,52;UBERON:0007135,2.26e-22,52;UBERON:0001016,3.71e-22,75;UBERON:0010371,5.49e-22,73;UBERON:0003056,1.65e-21,49;UBERON:0004121,1.66e-20,95;UBERON:0000924,1.66e-20,95;UBERON:0006601,1.66e-20,95;UBERON:0002020,1.33e-19,34;UBERON:0000955,1.68e-19,47;UBERON:0006238,1.68e-19,47;UBERON:0002616,1.08e-18,46;UBERON:0003080,2.72e-18,40;UBERON:0002780,1.61e-17,39;UBERON:0001890,1.61e-17,39;UBERON:0006240,1.61e-17,39;UBERON:0003528,1.29e-16,29;UBERON:0002791,1.29e-16,29;UBERON:0001893,1.29e-16,29;UBERON:0010314,7.32e-16,92;UBERON:0000956,2.73e-11,21;UBERON:0001869,2.73e-11,21;UBERON:0000203,2.73e-11,21;UBERON:0002619,1.57e-09,17;UBERON:0002021,9.40e-09,10;UBERON:0000411,9.40e-09,10;UBERON:0001950,9.40e-09,10 | |||
|phase1_expression=5.12476310735341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.2902381082794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0.439372365468944,0.388859798148567,0,0,0,0,0,0,0,0,34.5961148069912,38.6163414868584,27.8885817542719,0,0,0,0,0,0,0.384218305321555,17.5235444801327,11.8805225731888,16.8259969081106,19.1386159550548,18.3320888989839,41.5243809338694,31.0539326099086,21.1420320920305,31.9336054898227,28.3465890549117,36.2511418484735,42.863043512313,44.9204330087831,55.2168172790166,19.5428099300967,43.3327209724394,37.1299742097649,37.4178303551558,45.2741944941147,36.7206908275842,0.151452386666368,0.68014404096107,0,0,0,0,0,0,1.26399978118577,0,0,0,1.12674735821344,0,0,0,0,0,0,1.59857431606684,0,0.148442139064825,4.51061849591953,2.74018930480927,2.30615497256059,2.26083960828934,3.52766121407114,0.251333182659351,0,0.289198713839823,0,5.50007289821191,4.19598885074748,8.727754556434,0,19.6163133997737,15.7085030110091,0.255457055208591,0,0,0,62.0133247135966,59.0175777636028,76.2721917325087,58.0573229442203,57.5359778993244,48.6224024269371,56.4599595475797,2.54598409625791,5.22509276562391,0.252722758433675,6.73413938836717,11.0602376518298,6.20735681970377,9.72335500948886,12.3577950625286,19.0502197623718,20.3700815252911,19.6773621575431,19.1440494346872,11.6406716183735,25.15110866232,17.067259043903,4.82230611340665,12.7901734643775,8.00979983000983,8.23128545631774,9.15557627365069,0,0,0,1.86413195281952,2.11073453982987,1.08037236876609,0.473489471170421,0.590292695242212,1.07986979021165,0.465067889500816,1.07309360559848,0.233530684734339,0,0,0.0810688095458557,0.146199987425332,0,0,58.2503157522632,63.9037642875356,0,0.264450566663544,9.81125952462076,10.4506502337197,4.63922860759536,1.61346819698674,2.44615848229357,1.33157938278791,0.474529061544512,0.823494773620054,1.50801125280162,1.1937388322469,1.55971269695296,0.898819408654221,0.216138049874694,0.199141273254367,1.32767530667157,5.02693455482807,2.25415471346161,3.66572390121566,3.10323979468201,2.94570443539338,2.90888070771584,0,0.470996183524124,0.246794327843601,0,0.83422552858047,0.982794975566015,0,0.405720242777006,0,0.25462585178142,0,0,0,0,0,0,0,0,0,0,1.89491411770485,1.62964976442026,0.848725428875941,0.469380496577004,0.335012514883631,0.238043640886014,0.390267295715598,0.472905432318573,0,0,0.163863314715738,0.172684981865896,0,0,0,0,0,32.1101179975584,36.4528345301752,0,2.01976741763498,4.41711507182759,3.90438744296638,7.97066571611356,1.43381278771531,2.00518806674155,2.83076530788832,0.809621403349789,3.79932615284705,3.95287777946523,82.9008996368262,7.80670468645477,1.6025904330053,4.56083486190013,7.4236555337641,0,2.91336763385978,1.209294227859,1.32023555829129,0.590603785761546,2.15204603560749,1.80899805217755,1.09060118843252,0.356497378384721,0.948110273807448,0,0,26.5542892487955,7.92268813737765,0.776152102696527,3.64372959553707,3.54680467284547,3.0322698992352,6.41741180348272,1.522324745573,0.23467170806371,0,0,0.49465875882444,1.45317984026315,1.26657142349127,0.477489376012546,0.656563598980245,0.874442509889552,30.5951748317341,0,1.03193433981611,0.370389054739423,0,0,0,0,0,0,0,7.27572785236611,4.47302827679067,2.80813886136683,2.29997125615916,2.40198820120795,1.21377911746339,0.826534557253359,0.785267825952089,0.648074866458964,0,0,1.79419855252775,1.65458490457098,1.94451188344048,1.6790777052105,1.520605129417,3.0512882047896,1.43224823328345,0.524296722128554,0,0,0,0.405450430580328,1.33524244314275,0.25984164595559,0.179026695667481,0.198681354781265,0.120195449519969,0,0,0.0762068066549998,0,0,0,0,0.226730383615211,0,0,0,0,2.62755465631655,15.0184331899157,0.428736758158132,1.50471631210609,80.7595134942405,53.3977274348325,60.726924424576,49.6655696973257,60.2872617398165,51.3667850224996,60.7520250208625,62.5946472481666,65.2525068937255,54.8825930456929,6.84996494055566,15.5619700626402,18.2684958156924,12.8846560046196,10.4806581313991,11.0306105070008,16.4462578573195,15.658664350156,18.2923949467335,14.9091354940641,17.997030292207,16.4104917005886,12.9225280308438,15.6221371867881,14.7609155215926,17.6228665774737,16.2238056322798,14.0823730938505,13.5988347265091,16.1918812147837,11.6575545811041,15.6178709420217,13.5908628269973,16.1334522461885,14.5869539643762,17.7690676572521,16.097661612804,12.8904158604543,14.1236278399696,17.9565526930476,13.4057570480317,11.3280154731898,12.2769312950907,13.789378865551,11.3814900478873,25.2308683717325,13.3341016813883,12.4625211348013,9.75570493551101,3.30887128679273,5.79669589051054 | |||
|short_description=p1@Csrnp3 | |||
}} |
Revision as of 00:18, 14 September 2013
Short description: | p1@Csrnp3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Csrnp3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000053910, ENSMUST00000139896_5end |
EntrezGene: | Csrnp3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.89e-14 | 23 |
neuroblast (sensu Vertebrata) | 4.89e-14 | 23 |
neuron | 7.11e-13 | 33 |
neuronal stem cell | 7.11e-13 | 33 |
neuroblast | 7.11e-13 | 33 |
electrically signaling cell | 7.11e-13 | 33 |
electrically responsive cell | 8.00e-09 | 39 |
electrically active cell | 8.00e-09 | 39 |
neural cell | 7.00e-07 | 43 |
ectodermal cell | 8.25e-07 | 44 |
neurectodermal cell | 8.25e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 2.97e-26 | 64 |
neural plate | 2.97e-26 | 64 |
presumptive neural plate | 2.97e-26 | 64 |
regional part of nervous system | 1.17e-23 | 54 |
central nervous system | 1.35e-23 | 73 |
neural tube | 2.26e-22 | 52 |
neural rod | 2.26e-22 | 52 |
future spinal cord | 2.26e-22 | 52 |
neural keel | 2.26e-22 | 52 |
nervous system | 3.71e-22 | 75 |
ecto-epithelium | 5.49e-22 | 73 |
pre-chordal neural plate | 1.65e-21 | 49 |
ectoderm-derived structure | 1.66e-20 | 95 |
ectoderm | 1.66e-20 | 95 |
presumptive ectoderm | 1.66e-20 | 95 |
gray matter | 1.33e-19 | 34 |
brain | 1.68e-19 | 47 |
future brain | 1.68e-19 | 47 |
regional part of brain | 1.08e-18 | 46 |
anterior neural tube | 2.72e-18 | 40 |
regional part of forebrain | 1.61e-17 | 39 |
forebrain | 1.61e-17 | 39 |
future forebrain | 1.61e-17 | 39 |
brain grey matter | 1.29e-16 | 29 |
regional part of telencephalon | 1.29e-16 | 29 |
telencephalon | 1.29e-16 | 29 |
structure with developmental contribution from neural crest | 7.32e-16 | 92 |
cerebral cortex | 2.73e-11 | 21 |
cerebral hemisphere | 2.73e-11 | 21 |
pallium | 2.73e-11 | 21 |
regional part of cerebral cortex | 1.57e-09 | 17 |
occipital lobe | 9.40e-09 | 10 |
visual cortex | 9.40e-09 | 10 |
neocortex | 9.40e-09 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.