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Coexpression cluster:C49: Difference between revisions

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|tfbs_overrepresentation_for_novel_motifs=0.391923,0.360497,0.506584,0.177397,0.10926,0.122482,0.730428,0.0163347,0.343653,0.589432,0.777975,0.0649704,0.0582176,0.229501,0.0179066,0.108102,0.628111,1.90412,0.479162,0.0704948,0.129944,0.194542,0.0718018,0.0238293,2.39356,0.0537966,1.06449,0.55364,0.197849,0.635263,0.135687,0.0224371,0.175641,0.40996,0.00724353,3.09798,0.343906,0.239431,0.0957929,0.583421,0.999165,0.0286198,0.164049,0.133403,0.207576,0.467834,0.737816,0.963489,0.0446352,1.36524,0.171998,0.226021,0.0254283,0.504218,0.548385,0.0453233,0.57271,0.88364,0.779985,0.207716,0.0371725,0.915887,0.17064,1.34797,0.119368,0.272781,0.539861,0.354722,0.267999,0.425453,0.979332,0.311236,0.482083,0.542875,0.332256,0.0815813,0.328414,0.0178468,0.0452778,0.0643083,0.220833,0.251059,0.250151,0.199528,0.617067,0.271823,0.000931116,1.39711,0.231496,0.157762,0.108348,0.106461,0.0642557,0.373187,0.000670104,0.00623143,0.669775,0.0456675,0.0141269,0.0535397,0.0089454,0.852444,0.0938764,0.474225,0.35112,0.063122,0.420157,0.104597,0.0331204,0.252525,0.707816,0.605357,0.0411326,0.121755,0.206479,0.332311,0.0437823,0.18128,0.00453916,0.712175,0.325063,0.225487,0.165402,0.285852,0.0384904,0.0790147,0.175101,0.0678193,0.234189,0.436864,0.350322,1.74625,0.977584,0.770394,0.280087,0.0593104,3.23705,0.448885,1.0405,0.469954,0.547559,0.364802,0.0487256,0.623497,0.0114314,0.0887156,0.080395,0.916059,0.00464043,0.0579514,0.0249999,1.31861,0.53637,0.377041,0.368984,0.0604469,0.193234,0.0378616,0.0124794,0.889037,0.362657,0.182036,0.943607,1.06269,0.289474,0.174672,3.82957,0.187616,1.59789
|tfbs_overrepresentation_for_novel_motifs=0.391923,0.360497,0.506584,0.177397,0.10926,0.122482,0.730428,0.0163347,0.343653,0.589432,0.777975,0.0649704,0.0582176,0.229501,0.0179066,0.108102,0.628111,1.90412,0.479162,0.0704948,0.129944,0.194542,0.0718018,0.0238293,2.39356,0.0537966,1.06449,0.55364,0.197849,0.635263,0.135687,0.0224371,0.175641,0.40996,0.00724353,3.09798,0.343906,0.239431,0.0957929,0.583421,0.999165,0.0286198,0.164049,0.133403,0.207576,0.467834,0.737816,0.963489,0.0446352,1.36524,0.171998,0.226021,0.0254283,0.504218,0.548385,0.0453233,0.57271,0.88364,0.779985,0.207716,0.0371725,0.915887,0.17064,1.34797,0.119368,0.272781,0.539861,0.354722,0.267999,0.425453,0.979332,0.311236,0.482083,0.542875,0.332256,0.0815813,0.328414,0.0178468,0.0452778,0.0643083,0.220833,0.251059,0.250151,0.199528,0.617067,0.271823,0.000931116,1.39711,0.231496,0.157762,0.108348,0.106461,0.0642557,0.373187,0.000670104,0.00623143,0.669775,0.0456675,0.0141269,0.0535397,0.0089454,0.852444,0.0938764,0.474225,0.35112,0.063122,0.420157,0.104597,0.0331204,0.252525,0.707816,0.605357,0.0411326,0.121755,0.206479,0.332311,0.0437823,0.18128,0.00453916,0.712175,0.325063,0.225487,0.165402,0.285852,0.0384904,0.0790147,0.175101,0.0678193,0.234189,0.436864,0.350322,1.74625,0.977584,0.770394,0.280087,0.0593104,3.23705,0.448885,1.0405,0.469954,0.547559,0.364802,0.0487256,0.623497,0.0114314,0.0887156,0.080395,0.916059,0.00464043,0.0579514,0.0249999,1.31861,0.53637,0.377041,0.368984,0.0604469,0.193234,0.0378616,0.0124794,0.889037,0.362657,0.182036,0.943607,1.06269,0.289474,0.174672,3.82957,0.187616,1.59789
|tfbs_overrepresentation_jaspar=MA0003.1;0.800809,MA0004.1;0.0771229,MA0006.1;0.10408,MA0007.1;0.550234,MA0009.1;0.837723,MA0014.1;1.31198,MA0017.1;0.203291,MA0019.1;0.248072,MA0024.1;1.29973,MA0025.1;0.0330094,MA0027.1;0.896654,MA0028.1;0.00252954,MA0029.1;0.689488,MA0030.1;0.463521,MA0031.1;0.17933,MA0038.1;0.368225,MA0040.1;0.522298,MA0041.1;0.109867,MA0042.1;1.70116,MA0043.1;0.00116511,MA0046.1;0.138702,MA0048.1;0.0202017,MA0050.1;0.00339647,MA0051.1;0.0294325,MA0052.1;0.372495,MA0055.1;2.99722e-08,MA0056.1;0,MA0057.1;4.20171,MA0058.1;0.0163497,MA0059.1;0.321565,MA0060.1;0.613184,MA0061.1;1.23003,MA0063.1;0,MA0066.1;0.0170395,MA0067.1;0.284846,MA0068.1;1.08773,MA0069.1;1.62701,MA0070.1;0.0218839,MA0071.1;0.397132,MA0072.1;0.117016,MA0073.1;4.48549,MA0074.1;1.04479,MA0076.1;0.00133405,MA0077.1;1.46421,MA0078.1;0.419086,MA0081.1;0.00524314,MA0083.1;0.079975,MA0084.1;0.277796,MA0087.1;0.499039,MA0088.1;0.331573,MA0089.1;0,MA0090.1;0.278446,MA0091.1;0.00544509,MA0092.1;0.0213306,MA0093.1;0.0612765,MA0095.1;0,MA0098.1;0,MA0100.1;0.0110454,MA0101.1;0.0332303,MA0103.1;1.4114,MA0105.1;2.85393,MA0106.1;2.83741,MA0107.1;0.282091,MA0108.2;2.64195,MA0109.1;0,MA0111.1;0.347045,MA0113.1;0.0265107,MA0114.1;0.650424,MA0115.1;0.376626,MA0116.1;1.48343,MA0117.1;1.31058,MA0119.1;0.539458,MA0122.1;0.054912,MA0124.1;0.305514,MA0125.1;2.19786,MA0130.1;0,MA0131.1;0.110455,MA0132.1;0,MA0133.1;0,MA0135.1;0.503105,MA0136.1;0.036603,MA0139.1;0.0161207,MA0140.1;3.22756,MA0141.1;0.108906,MA0142.1;17.2677,MA0143.1;11.6533,MA0144.1;0.201561,MA0145.1;0.070685,MA0146.1;0.0876199,MA0147.1;0.39746,MA0148.1;0.17347,MA0149.1;0.0350261,MA0062.2;0.00169708,MA0035.2;2.92124,MA0039.2;11.4989,MA0138.2;0.0502373,MA0002.2;0.0689023,MA0137.2;0.230987,MA0104.2;0.682583,MA0047.2;0.139088,MA0112.2;0.0502628,MA0065.2;5.64287,MA0150.1;0.0212582,MA0151.1;0,MA0152.1;0.415986,MA0153.1;0.303662,MA0154.1;1.50426,MA0155.1;2.36161,MA0156.1;0.00657359,MA0157.1;0.0508382,MA0158.1;0,MA0159.1;0.727413,MA0160.1;0.0273165,MA0161.1;0,MA0162.1;0.0958032,MA0163.1;1.80063,MA0164.1;0.158603,MA0080.2;0.0045609,MA0018.2;0.00126724,MA0099.2;0.00130439,MA0079.2;29.772,MA0102.2;0.0957963,MA0258.1;0.149814,MA0259.1;0.340788,MA0442.1;0
}}
}}

Revision as of 18:09, 22 January 2013


Full id: C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma



Phase1 CAGE Peaks

Hg19::chr10:101673730..101673781,-p3@DNMBP
Hg19::chr10:118085026..118085031,+p@chr10:118085026..118085031
+
Hg19::chr10:126138622..126138638,-p2@NKX1-2
Hg19::chr10:13390193..13390218,-p4@SEPHS1
Hg19::chr10:13390222..13390246,-p1@SEPHS1
Hg19::chr10:13390252..13390269,-p5@SEPHS1
Hg19::chr10:135042855..135042873,+p@chr10:135042855..135042873
+
Hg19::chr10:135051422..135051430,+p2@VENTX
Hg19::chr10:21581922..21581939,-p@chr10:21581922..21581939
-
Hg19::chr10:21581957..21581984,-p@chr10:21581957..21581984
-
Hg19::chr10:21581987..21581994,-p@chr10:21581987..21581994
-
Hg19::chr10:21581995..21582005,-p@chr10:21581995..21582005
-
Hg19::chr10:58982431..58982442,-p@chr10:58982431..58982442
-
Hg19::chr10:58982443..58982473,-p@chr10:58982443..58982473
-
Hg19::chr10:69039925..69039934,-p@chr10:69039925..69039934
-
Hg19::chr10:75407175..75407186,-p@chr10:75407175..75407186
-
Hg19::chr10:92055064..92055067,+p@chr10:92055064..92055067
+
Hg19::chr10:94833642..94833655,+p1@CYP26A1
Hg19::chr10:94833710..94833721,+p2@CYP26A1
Hg19::chr11:118505854..118505856,+p59@PHLDB1
Hg19::chr11:131123297..131123306,+p2@ENST00000416553
Hg19::chr11:133788673..133788715,-p@chr11:133788673..133788715
-
Hg19::chr11:134146589..134146608,-p@chr11:134146589..134146608
-
Hg19::chr11:17035711..17035737,+p4@OR7E14P
Hg19::chr11:3210693..3210702,+p1@ENST00000455154
Hg19::chr11:59583386..59583418,-p@chr11:59583386..59583418
-
Hg19::chr11:62525488..62525511,-p@chr11:62525488..62525511
-
Hg19::chr11:62525554..62525590,-p@chr11:62525554..62525590
-
Hg19::chr11:68518185..68518213,-p3@MTL5
Hg19::chr11:73703204..73703213,-p1@ENST00000534962
Hg19::chr12:113909667..113909681,-p1@LHX5
Hg19::chr12:113909805..113909830,+p1@ENST00000551357
Hg19::chr12:120808022..120808031,-p@chr12:120808022..120808031
-
Hg19::chr12:122018114..122018137,-p8@KDM2B
Hg19::chr12:122018409..122018432,-p12@KDM2B
Hg19::chr12:12837423..12837501,-p1@GPR19
Hg19::chr12:42878101..42878133,-p6@PRICKLE1
Hg19::chr12:55808623..55808650,-p2@PHC1P1
Hg19::chr12:59721532..59721540,-p@chr12:59721532..59721540
-
Hg19::chr12:59721677..59721683,-p@chr12:59721677..59721683
-
Hg19::chr12:7941942..7941949,+p3@NANOG
Hg19::chr12:7941989..7942014,+p1@NANOG
Hg19::chr12:9066419..9066470,+p3@PHC1
Hg19::chr12:9066472..9066482,+p8@PHC1
Hg19::chr12:9067527..9067542,+p@chr12:9067527..9067542
+
Hg19::chr12:9067566..9067591,+p@chr12:9067566..9067591
+
Hg19::chr12:95942538..95942549,-p7@USP44
Hg19::chr12:95945132..95945163,-p2@USP44
Hg19::chr12:95945196..95945210,-p5@USP44
Hg19::chr12:95945213..95945244,-p3@USP44
Hg19::chr12:95945246..95945270,-p4@USP44
Hg19::chr12:97858864..97858882,+p@chr12:97858864..97858882
+
Hg19::chr12:97858908..97858920,+p@chr12:97858908..97858920
+
Hg19::chr12:97858979..97858990,+p@chr12:97858979..97858990
+
Hg19::chr12:97859010..97859021,+p@chr12:97859010..97859021
+
Hg19::chr13:31437608..31437620,+p@chr13:31437608..31437620
+
Hg19::chr13:31437623..31437639,+p@chr13:31437623..31437639
+
Hg19::chr13:38489413..38489420,+p@chr13:38489413..38489420
+
Hg19::chr13:53313884..53313897,-p2@LECT1
Hg19::chr13:53313905..53313964,-p1@LECT1
Hg19::chr13:53314077..53314084,-p5@LECT1
Hg19::chr13:53314109..53314157,-p4@LECT1
Hg19::chr13:54842617..54842628,+p@chr13:54842617..54842628
+
Hg19::chr13:56153143..56153144,-p@chr13:56153143..56153144
-
Hg19::chr13:56156997..56157026,-p@chr13:56156997..56157026
-
Hg19::chr14:21175008..21175030,-p3@ENST00000554286
Hg19::chr14:21175067..21175069,-p4@ENST00000554286
Hg19::chr14:21175070..21175084,-p2@ENST00000554286
Hg19::chr14:21175090..21175105,-p1@ENST00000554286
Hg19::chr14:21296272..21296293,-p@chr14:21296272..21296293
-
Hg19::chr14:22005018..22005040,-p6@SALL2
Hg19::chr14:22005062..22005082,-p7@SALL2
Hg19::chr14:22005197..22005261,-p3@SALL2
Hg19::chr14:22005343..22005364,-p5@SALL2
Hg19::chr14:47573982..47573999,+p@chr14:47573982..47573999
+
Hg19::chr14:48729724..48729726,-p@chr14:48729724..48729726
-
Hg19::chr14:48729843..48729847,-p@chr14:48729843..48729847
-
Hg19::chr14:64653046..64653095,+p@chr14:64653046..64653095
+
Hg19::chr14:74815145..74815202,+p1@VRTN
Hg19::chr14:96342779..96342790,+p5@ENST00000504119
Hg19::chr14:96342861..96342881,+p4@ENST00000504119
Hg19::chr14:96459422..96459424,-p@chr14:96459422..96459424
-
Hg19::chr15:35354346..35354365,-p@chr15:35354346..35354365
-
Hg19::chr15:40213106..40213121,-p5@GPR176
Hg19::chr15:40731950..40731964,+p9@BAHD1
Hg19::chr15:52228372..52228406,-p@chr15:52228372..52228406
-
Hg19::chr15:53097013..53097030,-p2@ENST00000560818
Hg19::chr15:53097083..53097098,-p1@ENST00000560818
Hg19::chr15:57678413..57678419,+p@chr15:57678413..57678419
+
Hg19::chr15:65067687..65067701,-p5@RBPMS2
Hg19::chr15:85144307..85144329,+p2@ZSCAN2
Hg19::chr15:85147104..85147119,+p6@ZSCAN2
Hg19::chr15:85147127..85147142,+p5@ZSCAN2
Hg19::chr15:88579498..88579502,-p@chr15:88579498..88579502
-
Hg19::chr16:14377812..14377847,-p@chr16:14377812..14377847
-
Hg19::chr16:29747108..29747111,+p@chr16:29747108..29747111
+
Hg19::chr16:30935164..30935196,+p2@FBXL19
Hg19::chr16:3149266..3149277,-p2@ZSCAN10
Hg19::chr16:3149278..3149305,-p1@ZSCAN10
Hg19::chr16:65268795..65268836,-p@chr16:65268795..65268836
-
Hg19::chr16:69139617..69139628,+p3@HAS3
Hg19::chr17:27045427..27045451,-p7@RAB34
Hg19::chr17:27045488..27045508,-p12@RAB34
Hg19::chr17:47892398..47892407,+p2@KAT7
Hg19::chr17:65970934..65970949,-p@chr17:65970934..65970949
-
Hg19::chr17:7580758..7580773,-p20@TP53
Hg19::chr17:8066843..8066858,-p20@VAMP2
Hg19::chr18:29399308..29399314,+p@chr18:29399308..29399314
+
Hg19::chr18:29523326..29523366,+p@chr18:29523326..29523366
+
Hg19::chr18:29598576..29598585,+p6@RNF125
Hg19::chr18:3603958..3603976,+p4@ENST00000445581
p4@uc002kmi.2
Hg19::chr18:44526786..44526811,+p4@KATNAL2
Hg19::chr18:56530136..56530199,+p3@ZNF532
Hg19::chr18:76739996..76740012,-p@chr18:76739996..76740012
-
Hg19::chr18:76740023..76740045,-p@chr18:76740023..76740045
-
Hg19::chr18:76740152..76740186,+p2@SALL3
Hg19::chr19:10765673..10765687,+p@chr19:10765673..10765687
+
Hg19::chr19:10765699..10765728,+p@chr19:10765699..10765728
+
Hg19::chr19:12936544..12936548,+p1@CU674986
Hg19::chr19:19748353..19748362,-p@chr19:19748353..19748362
-
Hg19::chr19:23598780..23598811,-p2@ENST00000499882
p2@uc002nrh.1
Hg19::chr19:36164281..36164298,+p@chr19:36164281..36164298
+
Hg19::chr19:36164312..36164325,+p@chr19:36164312..36164325
+
Hg19::chr19:36275677..36275698,+p@chr19:36275677..36275698
+
Hg19::chr19:3933060..3933081,+p3@ITGB1BP3
Hg19::chr19:3933085..3933103,+p4@ITGB1BP3
Hg19::chr19:40006057..40006068,+p2@SELV
Hg19::chr19:50795882..50795891,+p@chr19:50795882..50795891
+
Hg19::chr19:52996047..52996089,+p@chr19:52996047..52996089
+
Hg19::chr19:55593143..55593185,+p5@EPS8L1
Hg19::chr19:55603889..55603900,-p@chr19:55603889..55603900
-
Hg19::chr19:55668143..55668174,-p@chr19:55668143..55668174
-
Hg19::chr19:56163789..56163799,+p@chr19:56163789..56163799
+
Hg19::chr1:114695537..114695554,-p1@SYT6
Hg19::chr1:11751574..11751662,-p3@MAD2L2
Hg19::chr1:11751835..11751892,-p4@MAD2L2
Hg19::chr1:154581144..154581155,-p17@ADAR
Hg19::chr1:154581182..154581204,-p7@ADAR
Hg19::chr1:155402929..155402937,+p1@POU5F1P4
Hg19::chr1:156119979..156120000,+p8@SEMA4A
Hg19::chr1:16174050..16174075,+p7@SPEN
Hg19::chr1:200380921..200380947,+p1@uc010ppi.1
Hg19::chr1:223198500..223198519,-p@chr1:223198500..223198519
-
Hg19::chr1:223202451..223202455,-p@chr1:223202451..223202455
-
Hg19::chr1:24790417..24790440,+p@chr1:24790417..24790440
+
Hg19::chr1:26737253..26737268,+p2@LIN28A
Hg19::chr1:26737274..26737286,+p3@LIN28A
Hg19::chr1:26737292..26737322,+p1@LIN28A
Hg19::chr1:26753181..26753186,+p@chr1:26753181..26753186
+
Hg19::chr1:29063272..29063283,+p14@YTHDF2
Hg19::chr1:29063287..29063301,+p7@YTHDF2
Hg19::chr1:29063305..29063346,+p3@YTHDF2
Hg19::chr1:36020531..36020557,-p8@KIAA0319L
Hg19::chr1:53905039..53905072,-p2@ENST00000443844
Hg19::chr1:53905204..53905220,-p1@ENST00000443844
Hg19::chr1:6260896..6260907,-p13@RPL22
Hg19::chr1:62660375..62660393,+p4@L1TD1
Hg19::chr1:62660484..62660495,+p3@L1TD1
Hg19::chr1:62660501..62660564,+p1@L1TD1
Hg19::chr1:62661928..62661962,+p@chr1:62661928..62661962
+
Hg19::chr1:62661968..62661996,+p@chr1:62661968..62661996
+
Hg19::chr1:62668364..62668368,+p@chr1:62668364..62668368
+
Hg19::chr1:62672541..62672554,+p2@L1TD1
Hg19::chr1:62672658..62672669,+p5@L1TD1
Hg19::chr1:62675452..62675463,+p@chr1:62675452..62675463
+
Hg19::chr1:6304233..6304243,+p1@HES3
Hg19::chr1:63787296..63787311,-p1@ENST00000426393
Hg19::chr1:63787320..63787340,-p2@ENST00000426393
Hg19::chr1:63787569..63787587,-p4@ENST00000426393
Hg19::chr20:3024266..3024272,+p1@GNRH2
Hg19::chr20:31331744..31331765,-p3@COMMD7
Hg19::chr20:31331767..31331783,-p4@COMMD7
Hg19::chr20:31350184..31350200,+p1@DNMT3B
Hg19::chr20:31368212..31368235,+p2@DNMT3B
Hg19::chr20:31369159..31369166,+p@chr20:31369159..31369166
+
Hg19::chr20:31375131..31375149,-p@chr20:31375131..31375149
-
Hg19::chr20:31396006..31396015,+p@chr20:31396006..31396015
+
Hg19::chr20:35200140..35200151,-p@chr20:35200140..35200151
-
Hg19::chr20:35202909..35202963,+p2@TGIF2
p3@C20orf24
Hg19::chr20:38900598..38900615,+p@chr20:38900598..38900615
+
Hg19::chr20:45997861..45997878,-p@chr20:45997861..45997878
-
Hg19::chr20:45997932..45997935,-p@chr20:45997932..45997935
-
Hg19::chr20:45997938..45997948,-p@chr20:45997938..45997948
-
Hg19::chr20:50418128..50418147,-p2@SALL4
Hg19::chr20:50418972..50419029,-p1@SALL4
Hg19::chr20:50419055..50419066,-p3@SALL4
Hg19::chr20:50419071..50419079,-p9@SALL4
Hg19::chr20:62572758..62572766,-p11@UCKL1
Hg19::chr21:46168812..46168831,+p@chr21:46168812..46168831
+
Hg19::chr21:46168834..46168857,+p@chr21:46168834..46168857
+
Hg19::chr22:31495027..31495048,+p@chr22:31495027..31495048
+
Hg19::chr22:38493783..38493794,-p@chr22:38493783..38493794
-
Hg19::chr22:38732156..38732200,-p6@CSNK1E
Hg19::chr22:39413746..39413766,+p@chr22:39413746..39413766
+
Hg19::chr22:39413828..39413848,+p@chr22:39413828..39413848
+
Hg19::chr2:196451015..196451038,+p@chr2:196451015..196451038
+
Hg19::chr2:206949880..206949891,+p8@ENST00000435627
Hg19::chr2:210073840..210073851,-p@chr2:210073840..210073851
-
Hg19::chr2:233285879..233285893,-p@chr2:233285879..233285893
-
Hg19::chr2:233285898..233285907,-p@chr2:233285898..233285907
-
Hg19::chr2:233285930..233285938,-p@chr2:233285930..233285938
-
Hg19::chr2:233285959..233285964,-p@chr2:233285959..233285964
-
Hg19::chr2:233285967..233285976,-p@chr2:233285967..233285976
-
Hg19::chr2:233286046..233286057,-p@chr2:233286046..233286057
-
Hg19::chr2:25475094..25475112,-p3@DNMT3A
Hg19::chr2:42722039..42722056,-p@chr2:42722039..42722056
-
Hg19::chr2:42722152..42722157,-p@chr2:42722152..42722157
-
Hg19::chr2:42795483..42795497,+p16@MTA3
Hg19::chr2:52565599..52565602,+p@chr2:52565599..52565602
+
Hg19::chr2:67559007..67559030,+p@chr2:67559007..67559030
+
Hg19::chr2:67563903..67563912,+p@chr2:67563903..67563912
+
Hg19::chr2:76806798..76806811,+p@chr2:76806798..76806811
+
Hg19::chr2:76826657..76826660,+p@chr2:76826657..76826660
+
Hg19::chr2:76920664..76920667,+p@chr2:76920664..76920667
+
Hg19::chr2:76923698..76923702,+p@chr2:76923698..76923702
+
Hg19::chr2:8016767..8016785,+p@chr2:8016767..8016785
+
Hg19::chr2:88752231..88752245,-p2@FOXI3
Hg19::chr2:88752256..88752265,-p3@FOXI3
Hg19::chr2:88838222..88838224,+p1@ENST00000413234
Hg19::chr2:946414..946430,-p2@ENST00000456949
Hg19::chr2:946431..946448,-p1@ENST00000456949
Hg19::chr2:946449..946463,-p3@ENST00000456949
Hg19::chr3:109033420..109033429,-p@chr3:109033420..109033429
-
Hg19::chr3:109045929..109045945,-p@chr3:109045929..109045945
-
Hg19::chr3:109049145..109049147,-p5@DPPA4
Hg19::chr3:109050105..109050109,-p4@DPPA4
Hg19::chr3:109052194..109052196,-p@chr3:109052194..109052196
-
Hg19::chr3:109056334..109056384,-p1@DPPA4
Hg19::chr3:109056387..109056400,-p2@DPPA4
Hg19::chr3:109056429..109056438,-p3@DPPA4
Hg19::chr3:109056581..109056596,+p1@ENST00000508178
Hg19::chr3:109056615..109056622,+p3@ENST00000508178
Hg19::chr3:112145303..112145318,-p@chr3:112145303..112145318
-
Hg19::chr3:115824309..115824311,-p@chr3:115824309..115824311
-
Hg19::chr3:185300242..185300263,+p8@SENP2
Hg19::chr3:185797682..185797689,-p16@ETV5
Hg19::chr3:185797712..185797746,-p6@ETV5
Hg19::chr3:32858112..32858132,+p@chr3:32858112..32858132
+
Hg19::chr3:32858228..32858237,+p@chr3:32858228..32858237
+
Hg19::chr3:32858319..32858331,+p@chr3:32858319..32858331
+
Hg19::chr3:32858508..32858525,+p@chr3:32858508..32858525
+
Hg19::chr3:32858527..32858538,+p@chr3:32858527..32858538
+
Hg19::chr3:32858554..32858574,+p@chr3:32858554..32858574
+
Hg19::chr3:32858578..32858597,+p@chr3:32858578..32858597
+
Hg19::chr3:32858612..32858631,+p@chr3:32858612..32858631
+
Hg19::chr3:32859593..32859606,+p3@TRIM71
Hg19::chr3:32933438..32933442,+p@chr3:32933438..32933442
+
Hg19::chr3:32937944..32937946,+p@chr3:32937944..32937946
+
Hg19::chr3:46619270..46619296,+p1@TDGF1
Hg19::chr3:57234000..57234014,-p1@HESX1
Hg19::chr3:62936055..62936065,+p2@ENST00000475886
Hg19::chr3:98044020..98044032,-p@chr3:98044020..98044032
-
Hg19::chr4:113568122..113568128,-p@chr4:113568122..113568128
-
Hg19::chr4:113568615..113568631,-p@chr4:113568615..113568631
-
Hg19::chr4:113569337..113569342,-p1@MIR302A
Hg19::chr4:113569516..113569523,-p1@MIR302C
Hg19::chr4:113571650..113571659,+p@chr4:113571650..113571659
+
Hg19::chr4:113573695..113573706,+p@chr4:113573695..113573706
+
Hg19::chr4:165798135..165798147,+p1@LOC100506013
Hg19::chr4:165798277..165798293,+p2@uc003iqv.1
Hg19::chr4:165798298..165798312,+p3@uc003iqv.1
Hg19::chr4:165798317..165798356,+p1@ENST00000515275
p1@uc003iqv.1
Hg19::chr4:187168395..187168407,-p@chr4:187168395..187168407
-
Hg19::chr4:188916918..188916942,+p1@ZFP42
Hg19::chr4:26030535..26030540,+p@chr4:26030535..26030540
+
Hg19::chr4:42294654..42294660,-p@chr4:42294654..42294660
-
Hg19::chr4:54343225..54343238,-p@chr4:54343225..54343238
-
Hg19::chr4:62635341..62635352,-p@chr4:62635341..62635352
-
Hg19::chr4:93197815..93197819,-p@chr4:93197815..93197819
-
Hg19::chr4:93365408..93365414,-p@chr4:93365408..93365414
-
Hg19::chr5:115910646..115910657,-p6@SEMA6A
Hg19::chr5:115910716..115910730,-p5@SEMA6A
Hg19::chr5:12625067..12625085,+p@chr5:12625067..12625085
+
Hg19::chr5:12662855..12662861,+p@chr5:12662855..12662861
+
Hg19::chr5:176558787..176558804,+p@chr5:176558787..176558804
+
Hg19::chr5:25435544..25435548,-p@chr5:25435544..25435548
-
Hg19::chr5:25444309..25444313,-p@chr5:25444309..25444313
-
Hg19::chr5:25444735..25444746,-p@chr5:25444735..25444746
-
Hg19::chr5:28930096..28930106,+p@chr5:28930096..28930106
+
Hg19::chr5:93697927..93697941,-p@chr5:93697927..93697941
-
Hg19::chr5:93698011..93698039,-p@chr5:93698011..93698039
-
Hg19::chr6:105388488..105388535,+p@chr6:105388488..105388535
+
Hg19::chr6:105405563..105405584,+p4@LIN28B
Hg19::chr6:10556030..10556063,+p10@GCNT2
Hg19::chr6:10556088..10556099,+p21@GCNT2
Hg19::chr6:107436524..107436543,-p5@BEND3
Hg19::chr6:121756737..121756744,+p3@GJA1
Hg19::chr6:126066762..126066773,-p@chr6:126066762..126066773
-
Hg19::chr6:131615558..131615562,+p@chr6:131615558..131615562
+
Hg19::chr6:131624969..131624980,+p@chr6:131624969..131624980
+
Hg19::chr6:15022187..15022205,-p@chr6:15022187..15022205
-
Hg19::chr6:15245797..15245818,+p8@JARID2
Hg19::chr6:167641710..167641733,+p@chr6:167641710..167641733
+
Hg19::chr6:167641759..167641804,+p@chr6:167641759..167641804
+
Hg19::chr6:167641809..167641819,+p@chr6:167641809..167641819
+
Hg19::chr6:24403144..24403224,+p1@MRS2
Hg19::chr6:25966448..25966461,+p7@TRIM38
Hg19::chr6:30816014..30816035,-p1@ENST00000442852
Hg19::chr6:31138055..31138073,-p3@POU5F1
Hg19::chr6:31138439..31138475,-p1@POU5F1
Hg19::chr6:33084418..33084441,+p@chr6:33084418..33084441
+
Hg19::chr6:33084479..33084506,+p@chr6:33084479..33084506
+
Hg19::chr6:33084750..33084762,+p@chr6:33084750..33084762
+
Hg19::chr6:43276547..43276569,-p1@CRIP3
Hg19::chr6:43276577..43276588,-p2@CRIP3
Hg19::chr6:4773257..4773270,+p2@CDYL
Hg19::chr6:4773291..4773301,+p8@CDYL
Hg19::chr6:4773312..4773315,+p13@CDYL
Hg19::chr7:100942887..100942911,+p1@ENST00000429254
Hg19::chr7:100942917..100942920,+p2@ENST00000429254
Hg19::chr7:100946049..100946091,+p@chr7:100946049..100946091
+
Hg19::chr7:100951567..100951611,+p1@uc003uyk.1
Hg19::chr7:116096018..116096020,+p@chr7:116096018..116096020
+
Hg19::chr7:138144983..138145011,+p2@TRIM24
Hg19::chr7:2395218..2395237,-p@chr7:2395218..2395237
-
Hg19::chr7:33391564..33391595,+p@chr7:33391564..33391595
+
Hg19::chr7:75889941..75889953,+p@chr7:75889941..75889953
+
Hg19::chr7:78197672..78197686,-p@chr7:78197672..78197686
-
Hg19::chr8:115294306..115294320,+p1@ENST00000520543
Hg19::chr8:132320836..132320868,+p1@ENST00000519695
p1@ENST00000524275
Hg19::chr8:145105424..145105440,+p@chr8:145105424..145105440
+
Hg19::chr8:145701166..145701187,-p2@FOXH1
Hg19::chr8:145701192..145701241,-p1@FOXH1
Hg19::chr8:39759861..39759881,+p3@IDO1
Hg19::chr8:70983443..70983460,-p2@PRDM14
Hg19::chr8:70983462..70983471,-p4@PRDM14
Hg19::chr8:70983476..70983493,-p1@PRDM14
Hg19::chr8:70983506..70983522,-p3@PRDM14
Hg19::chr8:70985091..70985097,-p@chr8:70985091..70985097
-
Hg19::chr8:73921067..73921078,+p3@TERF1
Hg19::chr8:73921136..73921151,+p2@TERF1
Hg19::chr8:841869..841879,+p@chr8:841869..841879
+
Hg19::chr8:91803695..91803706,+p7@NECAB1
Hg19::chr8:91940391..91940398,+p@chr8:91940391..91940398
+
Hg19::chr8:9915231..9915236,+p@chr8:9915231..9915236
+
Hg19::chr9:131446083..131446092,+p14@SET
Hg19::chr9:131446097..131446114,+p4@SET
Hg19::chr9:132549146..132549157,+p@chr9:132549146..132549157
+
Hg19::chr9:72435715..72435739,+p1@C9orf135
Hg19::chr9:72435749..72435764,+p2@C9orf135
Hg19::chr9:85396480..85396482,-p@chr9:85396480..85396482
-
Hg19::chr9:85499033..85499065,+p@chr9:85499033..85499065
+
Hg19::chr9:90025826..90025842,+p@chr9:90025826..90025842
+
Hg19::chrX:102997528..102997540,+p@chrX:102997528..102997540
+
Hg19::chrX:103015274..103015278,+p@chrX:103015274..103015278
+
Hg19::chrX:103021943..103021973,-p@chrX:103021943..103021973
-
Hg19::chrX:113235164..113235187,-p@chrX:113235164..113235187
-
Hg19::chrX:113300804..113300807,+p@chrX:113300804..113300807
+
Hg19::chrX:113841312..113841332,-p@chrX:113841312..113841332
-
Hg19::chrX:114957287..114957307,+p1@ENST00000451869
Hg19::chrX:114957329..114957350,+p1@ENST00000415394
Hg19::chrX:114957368..114957379,+p2@ENST00000415394
Hg19::chrX:128225319..128225335,+p@chrX:128225319..128225335
+
Hg19::chrX:133308067..133308078,-p@chrX:133308067..133308078
-
Hg19::chrX:153095771..153095780,-p19@PDZD4
Hg19::chrX:153095817..153095832,-p3@PDZD4
Hg19::chrX:153095959..153095971,-p10@PDZD4
Hg19::chrX:153095982..153096013,-p2@PDZD4
Hg19::chrX:16186799..16186803,-p@chrX:16186799..16186803
-
Hg19::chrX:16202178..16202185,-p@chrX:16202178..16202185
-
Hg19::chrX:16594524..16594529,+p@chrX:16594524..16594529
+
Hg19::chrX:16595231..16595235,+p@chrX:16595231..16595235
+
Hg19::chrX:2882369..2882397,-p2@ARSE
Hg19::chrX:40944690..40944704,+p1@USP9X
Hg19::chrX:40945779..40945807,+p@chrX:40945779..40945807
+
Hg19::chrX:70150939..70150952,-p1@SLC7A3
Hg19::chrX:95229339..95229345,-p1@ENST00000444292
Hg19::chrX:96565590..96565618,+p@chrX:96565590..96565618
+
Hg19::chrX:97828824..97828848,+p@chrX:97828824..97828848
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0003677DNA binding3.95036411579275e-15
GO:0005634nucleus1.20737198218058e-10
GO:0019222regulation of metabolic process1.2954821097401e-10
GO:0031323regulation of cellular metabolic process1.2954821097401e-10
GO:0019219regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process1.2954821097401e-10
GO:0050794regulation of cellular process1.75651419149499e-10
GO:0006355regulation of transcription, DNA-dependent2.65857670272778e-10
GO:0010468regulation of gene expression3.30540380273447e-10
GO:0050789regulation of biological process4.50925840855671e-10
GO:0045449regulation of transcription4.50925840855671e-10
GO:0006351transcription, DNA-dependent4.50925840855671e-10
GO:0032774RNA biosynthetic process4.50925840855671e-10
GO:0006350transcription1.85301713394524e-09
GO:0043231intracellular membrane-bound organelle2.16633446218497e-09
GO:0043227membrane-bound organelle2.16633446218497e-09
GO:0065007biological regulation2.44035625068062e-09
GO:0016070RNA metabolic process4.33394817796637e-08
GO:0043283biopolymer metabolic process8.20472778744412e-08
GO:0007275multicellular organismal development4.28603624078332e-07
GO:0006139nucleobase, nucleoside, nucleotide and nucleic acid metabolic process4.72973755730249e-07
GO:0043229intracellular organelle5.62229326061631e-07
GO:0043226organelle5.62229326061631e-07
GO:0010467gene expression1.26337489093366e-06
GO:0003676nucleic acid binding1.53778188763554e-06
GO:0044424intracellular part1.53778188763554e-06
GO:0043565sequence-specific DNA binding1.30599182065928e-05
GO:0003700transcription factor activity2.29393153517212e-05
GO:0005622intracellular4.34543701848668e-05
GO:0008270zinc ion binding6.91704608320932e-05
GO:0043170macromolecule metabolic process0.00026424115832834
GO:0032502developmental process0.000398075066182975
GO:0046914transition metal ion binding0.000713132997593127
GO:0032501multicellular organismal process0.00531395199956216
GO:0044238primary metabolic process0.00566905222576778
GO:0044464cell part0.0104126099465675
GO:0046872metal ion binding0.0212378991688859
GO:0043169cation binding0.0212378991688859
GO:0044237cellular metabolic process0.0241679808359093
GO:0043167ion binding0.0274850187662175
GO:0009893positive regulation of metabolic process0.0297645329767371
GO:0010232vascular transport0.0297645329767371
GO:0018144RNA-protein covalent cross-linking0.0297645329767371
GO:0035067negative regulation of histone acetylation0.0297645329767371
GO:0051095regulation of helicase activity0.0297645329767371
GO:0051097negative regulation of helicase activity0.0297645329767371
GO:0018143nucleic acid-protein covalent cross-linking0.0297645329767371
GO:0031057negative regulation of histone modification0.0297645329767371
GO:0016929SUMO-specific protease activity0.0297645329767371
GO:0008326site-specific DNA-methyltransferase (cytosine-specific) activity0.0297645329767371
GO:0015326cationic amino acid transmembrane transporter activity0.0297645329767371
GO:0032444activin responsive factor complex0.0297645329767371
GO:0015819lysine transport0.0297645329767371
GO:0008401retinoic acid 4-hydroxylase activity0.0297645329767371
GO:0030948negative regulation of vascular endothelial growth factor receptor signaling pathway0.0297645329767371
GO:0015181arginine transmembrane transporter activity0.0297645329767371
GO:0015189L-lysine transmembrane transporter activity0.0297645329767371
GO:0003682chromatin binding0.0304552529509428
GO:0007276gamete generation0.0366063061321303
GO:0019783small conjugating protein-specific protease activity0.046711025402069
GO:0048856anatomical structure development0.0475713832166307
GO:0016264gap junction assembly0.0475713832166307
GO:0042149cellular response to glucose starvation0.0475713832166307
GO:0015867ATP transport0.0475713832166307
GO:0051503adenine nucleotide transport0.0475713832166307
GO:0003691double-stranded telomeric DNA binding0.0475713832166307
GO:0015809arginine transport0.0475713832166307
GO:0015865purine nucleotide transport0.0475713832166307
GO:0045844positive regulation of striated muscle development0.0475713832166307
GO:0035065regulation of histone acetylation0.0475713832166307
GO:0000739DNA strand annealing activity0.0475713832166307



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen
embryonic stem cell4.19e-675
germ line cell4.81e-307
germ cell4.81e-307
neuron1.09e-206
neuroblast1.09e-206
electrically signaling cell1.09e-206
neuronal stem cell1.10e-158
melanocyte9.65e-1310
melanoblast9.65e-1310
pigment cell2.91e-0914
neurectodermal cell1.28e-0759
Uber Anatomy
Ontology termp-valuen
testis2.40e-268
male reproductive organ2.85e-1911
gonad1.71e-1521
indifferent external genitalia1.71e-1521
indifferent gonad1.71e-1521
gonad primordium1.71e-1521
external genitalia8.64e-1522
male organism8.69e-1022
male reproductive system8.69e-1022
body cavity4.72e-0746
reproductive organ9.37e-0748
Disease
Ontology termp-valuen
germ cell and embryonal cancer5.51e-2122
germ cell cancer5.51e-2122


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.10.800809
MA0004.10.0771229
MA0006.10.10408
MA0007.10.550234
MA0009.10.837723
MA0014.11.31198
MA0017.10.203291
MA0019.10.248072
MA0024.11.29973
MA0025.10.0330094
MA0027.10.896654
MA0028.10.00252954
MA0029.10.689488
MA0030.10.463521
MA0031.10.17933
MA0038.10.368225
MA0040.10.522298
MA0041.10.109867
MA0042.11.70116
MA0043.10.00116511
MA0046.10.138702
MA0048.10.0202017
MA0050.10.00339647
MA0051.10.0294325
MA0052.10.372495
MA0055.12.99722e-08
MA0056.10
MA0057.14.20171
MA0058.10.0163497
MA0059.10.321565
MA0060.10.613184
MA0061.11.23003
MA0063.10
MA0066.10.0170395
MA0067.10.284846
MA0068.11.08773
MA0069.11.62701
MA0070.10.0218839
MA0071.10.397132
MA0072.10.117016
MA0073.14.48549
MA0074.11.04479
MA0076.10.00133405
MA0077.11.46421
MA0078.10.419086
MA0081.10.00524314
MA0083.10.079975
MA0084.10.277796
MA0087.10.499039
MA0088.10.331573
MA0089.10
MA0090.10.278446
MA0091.10.00544509
MA0092.10.0213306
MA0093.10.0612765
MA0095.10
MA0098.10
MA0100.10.0110454
MA0101.10.0332303
MA0103.11.4114
MA0105.12.85393
MA0106.12.83741
MA0107.10.282091
MA0108.22.64195
MA0109.10
MA0111.10.347045
MA0113.10.0265107
MA0114.10.650424
MA0115.10.376626
MA0116.11.48343
MA0117.11.31058
MA0119.10.539458
MA0122.10.054912
MA0124.10.305514
MA0125.12.19786
MA0130.10
MA0131.10.110455
MA0132.10
MA0133.10
MA0135.10.503105
MA0136.10.036603
MA0139.10.0161207
MA0140.13.22756
MA0141.10.108906
MA0142.117.2677
MA0143.111.6533
MA0144.10.201561
MA0145.10.070685
MA0146.10.0876199
MA0147.10.39746
MA0148.10.17347
MA0149.10.0350261
MA0062.20.00169708
MA0035.22.92124
MA0039.211.4989
MA0138.20.0502373
MA0002.20.0689023
MA0137.20.230987
MA0104.20.682583
MA0047.20.139088
MA0112.20.0502628
MA0065.25.64287
MA0150.10.0212582
MA0151.10
MA0152.10.415986
MA0153.10.303662
MA0154.11.50426
MA0155.12.36161
MA0156.10.00657359
MA0157.10.0508382
MA0158.10
MA0159.10.727413
MA0160.10.0273165
MA0161.10
MA0162.10.0958032
MA0163.11.80063
MA0164.10.158603
MA0080.20.0045609
MA0018.20.00126724
MA0099.20.00130439
MA0079.229.772
MA0102.20.0957963
MA0258.10.149814
MA0259.10.340788
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
BCL11A#53335251.922049803767420.001624394114050010.0101678212093059
CTBP2#1488172.889401099643840.0001162150299853140.0015793599891524
NANOG#79923786.181823093547393.33551519093832e-381.7956591290021e-35
POLR2A#54302301.338520950158158.1705249827463e-107.68758070876613e-08
POU5F1#54603430.90767709854962.57280266612752e-391.45243750079833e-36
SP1#6667901.389849116619730.00055963764423090.00477633373586916
TAF1#68721831.65793352382491.89067109621869e-153.47640490524619e-13
TAF7#6879952.943473153029195.55656838565741e-221.54341075965339e-19
TBP#69081481.486726454445163.06564915825508e-082.07231930381231e-06



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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