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MCL coexpression mm9:82: Difference between revisions

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{{MCL_coexpression_mm9
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condensation;0.00355085442258724;21973,70099!GO:0000279;M phase;0.00658639189895931;17345,70099,55947!GO:0051301;cell division;0.00658639189895931;21973,70099,55947!GO:0000793;condensed chromosome;0.00658639189895931;21973,17345!GO:0007059;chromosome segregation;0.00658639189895931;21973,70099!GO:0022403;cell cycle phase;0.00658639189895931;17345,70099,55947!GO:0005694;chromosome;0.0125972568877554;21973,17345,70099!GO:0003951;NAD+ kinase activity;0.015478993429088;68646!GO:0005784;translocon complex;0.015478993429088;54208!GO:0030507;spectrin binding;0.015478993429088;269587!GO:0005730;nucleolus;0.0170289392113143;21973,17345!GO:0005791;rough endoplasmic reticulum;0.0226118251666821;54208!GO:0030867;rough endoplasmic reticulum membrane;0.0226118251666821;54208!GO:0022402;cell cycle process;0.0226118251666821;17345,70099,55947!GO:0003918;DNA topoisomerase (ATP-hydrolyzing) activity;0.0244190999857556;21973!GO:0006259;DNA metabolic process;0.0244190999857556;21973,70099,55947!GO:0007067;mitosis;0.0244190999857556;70099,55947!GO:0000087;M phase of mitotic cell cycle;0.0244190999857556;70099,55947!GO:0040016;embryonic cleavage;0.0244190999857556;21973!GO:0043232;intracellular non-membrane-bound organelle;0.0257644224551713;269587,21973,17345,70099!GO:0043228;non-membrane-bound organelle;0.0257644224551713;269587,21973,17345,70099!GO:0007049;cell cycle;0.0257644224551713;17345,70099,55947!GO:0003916;DNA topoisomerase activity;0.0257644224551713;21973!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0257644224551713;269587!GO:0006265;DNA topological change;0.0278194797246813;21973!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0296528973411352;269587!GO:0000278;mitotic cell cycle;0.0296528973411352;70099,55947!GO:0007076;mitotic chromosome condensation;0.0358468670272311;70099!GO:0000070;mitotic sister chromatid segregation;0.0437132389986141;70099!GO:0000819;sister chromatid segregation;0.0437132389986141;70099!GO:0006613;cotranslational protein targeting to membrane;0.0447134875203927;54208!GO:0043231;intracellular membrane-bound organelle;0.0447134875203927;269587,68646,21973,17345,54208,70099,55947!GO:0043227;membrane-bound organelle;0.0447134875203927;269587,68646,21973,17345,54208,70099,55947!GO:0006289;nucleotide-excision 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|gostat_on_MCL_coexpression=GO:0030261;chromosome condensation;0.00355085442258724;21973,70099!GO:0000279;M phase;0.00658639189895931;17345,70099,55947!GO:0051301;cell division;0.00658639189895931;21973,70099,55947!GO:0000793;condensed chromosome;0.00658639189895931;21973,17345!GO:0007059;chromosome segregation;0.00658639189895931;21973,70099!GO:0022403;cell cycle phase;0.00658639189895931;17345,70099,55947!GO:0005694;chromosome;0.0125972568877554;21973,17345,70099!GO:0003951;NAD+ kinase activity;0.015478993429088;68646!GO:0005784;translocon complex;0.015478993429088;54208!GO:0030507;spectrin binding;0.015478993429088;269587!GO:0005730;nucleolus;0.0170289392113143;21973,17345!GO:0005791;rough endoplasmic reticulum;0.0226118251666821;54208!GO:0030867;rough endoplasmic reticulum membrane;0.0226118251666821;54208!GO:0022402;cell cycle process;0.0226118251666821;17345,70099,55947!GO:0003918;DNA topoisomerase (ATP-hydrolyzing) activity;0.0244190999857556;21973!GO:0006259;DNA metabolic process;0.0244190999857556;21973,70099,55947!GO:0007067;mitosis;0.0244190999857556;70099,55947!GO:0000087;M phase of mitotic cell cycle;0.0244190999857556;70099,55947!GO:0040016;embryonic cleavage;0.0244190999857556;21973!GO:0043232;intracellular non-membrane-bound organelle;0.0257644224551713;269587,21973,17345,70099!GO:0043228;non-membrane-bound organelle;0.0257644224551713;269587,21973,17345,70099!GO:0007049;cell cycle;0.0257644224551713;17345,70099,55947!GO:0003916;DNA topoisomerase activity;0.0257644224551713;21973!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0257644224551713;269587!GO:0006265;DNA topological change;0.0278194797246813;21973!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0296528973411352;269587!GO:0000278;mitotic cell cycle;0.0296528973411352;70099,55947!GO:0007076;mitotic chromosome condensation;0.0358468670272311;70099!GO:0000070;mitotic sister chromatid segregation;0.0437132389986141;70099!GO:0000819;sister chromatid segregation;0.0437132389986141;70099!GO:0006613;cotranslational protein targeting to membrane;0.0447134875203927;54208!GO:0043231;intracellular membrane-bound organelle;0.0447134875203927;269587,68646,21973,17345,54208,70099,55947!GO:0043227;membrane-bound organelle;0.0447134875203927;269587,68646,21973,17345,54208,70099,55947!GO:0006289;nucleotide-excision repair;0.0476041912319939;55947!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001048!8.97e-12!134;UBERON:0001041!5.93e-10!80;UBERON:0009569!6.14e-08!66;UBERON:0005177!1.95e-07!79;UBERON:0000466!5.52e-07!79;UBERON:0000475!8.85e-07!150
|tfbs_overrepresentation_for_novel_motifs=0.0130597,1.52527e-09,0.00251673,0.561799,0.330826,3.69349,0.0179278,0.0670263,0.0864989,3.03911e-07,0.00938929,0.609528,0.000953602,0.0561231,0.827526,0,0.00942464,1.72263,0.0270867,0.00178805,0.981096,0.000589172,0.000733803,1.82064,0.000768659,0.0296328,0.000281492,0.00607858,0.00396821,0.000306971,0.0151573,0.24271,0.00472485,0.0588882,0.000137266,0.00267237,5.86345e-07,0.0403399,0.303848,0.0216515,0.96682,0.00517819,0.102212,1.64494,3.28896e-11,0.251793,0.293889,0.193217,0.906058,0.00430161,0.00789754,0.0975825,0.000192238,0.056601,2.32644,0.126922,0.52078,0.0126073,0.114972,0.00595855,0.0194026,0.01309,0.0322307,0.107429,0.00720588,0.290997,0.370925,0.873573,0.408702,0.227152,0.00497322,1.43964,2.63655e-09,0.256392,3.12425e-06,5.39707e-08,0.158315,1.56938,0.945709,1.45617,2.30289,0.0111463,0.527861,1.59532,0.0387738,0,0.235448,0.108425,1.67787,0.45232,0.458688,0.0400057,0.106263,1.47247,8.42706e-06,6.16726,0.178051,0.10807,0.0711144,0.000770207,2.80126,0.458043,0.0513655,0.245262,0.116365,0.00513664,0.0139367,0.601682,0.0237823,2.69142e-06,0.0548232,0.0518871,0.00974262,0.0101897,0.154068,0.786694,3.48015e-11,0.0617822,0.273818,0.779041,0.0756306,0.562531,0.155417,2.79352,0.184067,0.202072,0.206105,0.101975,0.115252,0.00836143,0.703672,0.262128,1.66332,0.586848,0.960796,0.0904788,6.34325,0.518406,0.432071,0.771936,0.426821,0.376616,0.172305,0.256195,0.233905,3.89729,0.991699,0.735823,0.425045,1.36795e-05,0.116902,5.77208e-12,0.208396,0.168748,0.0695724,0.290313,0.19326,0.0508969,0.855627,2.54373e-05,0.444327,0.0385645,0.0792392,0.0957297,1.23064,1.96873,0.0286378,0.0413696,9.25754e-14
|tfbs_overrepresentation_jaspar=MA0003.1;0,MA0004.1;0.184041,MA0006.1;0.000113723,MA0007.1;0.00802644,MA0009.1;0.277483,MA0014.1;2.82027e-12,MA0017.1;0.0351813,MA0019.1;0.029332,MA0024.1;0.0198246,MA0025.1;0.100139,MA0027.1;1.2451,MA0028.1;3.28988e-05,MA0029.1;1.30212,MA0030.1;0.203233,MA0031.1;0.164273,MA0038.1;0.26722,MA0040.1;0.542541,MA0041.1;4.07844,MA0042.1;4.59233,MA0043.1;0.190366,MA0046.1;0.0352363,MA0048.1;8.72798e-07,MA0050.1;0.758227,MA0051.1;0.165162,MA0052.1;0.560666,MA0055.1;2.6491e-06,MA0056.1;0,MA0057.1;2.67788e-07,MA0058.1;0.0107964,MA0059.1;0.101815,MA0060.1;1.22785e-05,MA0061.1;0.0316509,MA0063.1;0,MA0066.1;0.0671373,MA0067.1;0.153392,MA0068.1;0.00354581,MA0069.1;0.30663,MA0070.1;0.122873,MA0071.1;0.401928,MA0072.1;0.83073,MA0073.1;0,MA0074.1;1.10018,MA0076.1;1.74504e-05,MA0077.1;0.0240074,MA0078.1;0.78147,MA0081.1;0.440048,MA0083.1;0.189669,MA0084.1;0.367529,MA0087.1;0.635667,MA0088.1;1.58116e-09,MA0089.1;0,MA0090.1;0.00546881,MA0091.1;2.18182,MA0092.1;0.122426,MA0093.1;0.13713,MA0095.1;0,MA0098.1;0,MA0100.1;0.0388455,MA0101.1;0.116172,MA0103.1;0.122044,MA0105.1;2.11861e-05,MA0106.1;0.0506362,MA0107.1;0.067948,MA0108.2;0.223085,MA0109.1;0,MA0111.1;0.0439714,MA0113.1;0.0927648,MA0114.1;0.00394138,MA0115.1;0.428384,MA0116.1;0.000450324,MA0117.1;0.165326,MA0119.1;0.00222225,MA0122.1;0.048323,MA0124.1;0.398136,MA0125.1;1.07137,MA0130.1;0,MA0131.1;0.00499728,MA0132.1;0,MA0133.1;0,MA0135.1;0.838356,MA0136.1;0.0564407,MA0139.1;0.0239685,MA0140.1;0.085866,MA0141.1;2.10091,MA0142.1;3.36446,MA0143.1;1.33489,MA0144.1;0.324474,MA0145.1;4.64152e-05,MA0146.1;2.12152e-15,MA0147.1;0.00111135,MA0148.1;0.472602,MA0149.1;18.0923,MA0062.2;5.64933e-07,MA0035.2;0.278591,MA0039.2;0,MA0138.2;0.00455179,MA0002.2;0.065219,MA0137.2;0.0604206,MA0104.2;2.33637e-05,MA0047.2;0.151813,MA0112.2;7.62801e-06,MA0065.2;4.82605e-05,MA0150.1;0.661636,MA0151.1;0,MA0152.1;0.609516,MA0153.1;0.239973,MA0154.1;2.25699e-05,MA0155.1;0.000386302,MA0156.1;0.000543853,MA0157.1;0.966042,MA0158.1;0,MA0159.1;0.00902543,MA0160.1;0.34089,MA0161.1;0,MA0162.1;2.26617e-15,MA0163.1;4.26296e-10,MA0164.1;1.22921,MA0080.2;1.08449,MA0018.2;0.0630264,MA0099.2;0.167133,MA0079.2;0,MA0102.2;1.05086,MA0258.1;0.00238969,MA0259.1;0.00196296,MA0442.1;0
}}

Latest revision as of 14:39, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:30513115..30513119,-p@chr10:30513115..30513119
-
Mm9::chr10:39818693..39818711,-p@chr10:39818693..39818711
-
Mm9::chr10:39848767..39848811,-p@chr10:39848767..39848811
-
Mm9::chr10:45405801..45405803,+p@chr10:45405801..45405803
+
Mm9::chr10:90616594..90616601,-p@chr10:90616594..90616601
-
Mm9::chr11:4479976..4479992,-p@chr11:4479976..4479992
-
Mm9::chr11:79812743..79812747,+p@chr11:79812743..79812747
+
Mm9::chr11:84640776..84640796,-p@chr11:84640776..84640796
-
Mm9::chr11:98860541..98860554,-p@chr11:98860541..98860554
-
Mm9::chr11:98862367..98862384,-p2@Top2a
Mm9::chr11:98864356..98864385,-p@chr11:98864356..98864385
-
Mm9::chr11:98864873..98864877,-p@chr11:98864873..98864877
-
Mm9::chr12:11289162..11289182,+p@chr12:11289162..11289182
+
Mm9::chr12:27128974..27128977,-p@chr12:27128974..27128977
-
Mm9::chr12:32794247..32794251,-p@chr12:32794247..32794251
-
Mm9::chr13:35877065..35877069,+p@chr13:35877065..35877069
+
Mm9::chr13:47194740..47194755,-p@chr13:47194740..47194755
-
Mm9::chr13:47194765..47194802,-p@chr13:47194765..47194802
-
Mm9::chr13:47195573..47195584,-p@chr13:47195573..47195584
-
Mm9::chr13:47195587..47195621,-p@chr13:47195587..47195621
-
Mm9::chr13:47200976..47200990,-p@chr13:47200976..47200990
-
Mm9::chr13:47201052..47201070,-p@chr13:47201052..47201070
-
Mm9::chr14:62250725..62250730,-p1@Mir16-1
Mm9::chr14:70030753..70030755,-p@chr14:70030753..70030755
-
Mm9::chr14:70087623..70087646,-p@chr14:70087623..70087646
-
Mm9::chr14:71077141..71077147,-p@chr14:71077141..71077147
-
Mm9::chr15:57944827..57944832,-p@chr15:57944827..57944832
-
Mm9::chr15:72927352..72927367,-p@chr15:72927352..72927367
-
Mm9::chr15:9001076..9001089,+p3@1110020G09Rik
Mm9::chr16:37037961..37037975,+p@chr16:37037961..37037975
+
Mm9::chr16:91835679..91835682,+p@chr16:91835679..91835682
+
Mm9::chr17:53822268..53822273,-p@chr17:53822268..53822273
-
Mm9::chr17:5522035..5522058,+p@chr17:5522035..5522058
+
Mm9::chr17:5581012..5581016,+p@chr17:5581012..5581016
+
Mm9::chr18:57022694..57022698,-p@chr18:57022694..57022698
-
Mm9::chr19:37268555..37268557,-p@chr19:37268555..37268557
-
Mm9::chr19:37452110..37452112,+p@chr19:37452110..37452112
+
Mm9::chr19:56622612..56622617,-p2@Dclre1a
Mm9::chr19:5955605..5955609,-p@chr19:5955605..5955609
-
Mm9::chr1:161198648..161198652,+p@chr1:161198648..161198652
+
Mm9::chr1:183764684..183764700,-p@chr1:183764684..183764700
-
Mm9::chr1:71094690..71094694,-p@chr1:71094690..71094694
-
Mm9::chr1:71115541..71115549,-p@chr1:71115541..71115549
-
Mm9::chr2:30285562..30285567,+p@chr2:30285562..30285567
+
Mm9::chr2:70661468..70661472,-p@chr2:70661468..70661472
-
Mm9::chr2:72801854..72801883,-p@chr2:72801854..72801883
-
Mm9::chr2:79170988..79170993,+p@chr2:79170988..79170993
+
Mm9::chr3:104448955..104448959,+p@chr3:104448955..104448959
+
Mm9::chr3:127579639..127579648,-p@chr3:127579639..127579648
-
Mm9::chr3:134901009..134901022,+p@chr3:134901009..134901022
+
Mm9::chr3:68820009..68820030,+p3@Smc4
Mm9::chr3:68820614..68820629,+p4@Smc4
Mm9::chr3:68823173..68823185,+p8@Smc4
Mm9::chr3:68832444..68832455,+p@chr3:68832444..68832455
+
Mm9::chr3:68833317..68833336,+p@chr3:68833317..68833336
+
Mm9::chr3:68833368..68833388,+p@chr3:68833368..68833388
+
Mm9::chr3:95738724..95738759,+p@chr3:95738724..95738759
+
Mm9::chr3:95741066..95741080,+p@chr3:95741066..95741080
+
Mm9::chr3:95741826..95741843,+p@chr3:95741826..95741843
+
Mm9::chr4:11129557..11129560,+p@chr4:11129557..11129560
+
Mm9::chr4:131485673..131485699,-p@chr4:131485673..131485699
-
Mm9::chr4:131523739..131523753,-p6@Epb4.1
Mm9::chr4:131538641..131538645,-p@chr4:131538641..131538645
-
Mm9::chr4:142979588..142979615,+p1@ENSMUST00000122215
Mm9::chr4:46476724..46476765,+p@chr4:46476724..46476765
+
Mm9::chr4:46481537..46481549,+p@chr4:46481537..46481549
+
Mm9::chr4:46481551..46481574,+p@chr4:46481551..46481574
+
Mm9::chr4:46481580..46481608,+p@chr4:46481580..46481608
+
Mm9::chr4:46482784..46482816,+p@chr4:46482784..46482816
+
Mm9::chr4:46484266..46484272,+p@chr4:46484266..46484272
+
Mm9::chr4:52463728..52463738,+p@chr4:52463728..52463738
+
Mm9::chr5:108285954..108285957,-p@chr5:108285954..108285957
-
Mm9::chr5:30398904..30398908,-p@chr5:30398904..30398908
-
Mm9::chr5:8957179..8957183,+p@chr5:8957179..8957183
+
Mm9::chr6:47500969..47500980,-p@chr6:47500969..47500980
-
Mm9::chr6:47506097..47506113,-p@chr6:47506097..47506113
-
Mm9::chr6:60710187..60710209,-p@chr6:60710187..60710209
-
Mm9::chr6:88770151..88770163,+p@chr6:88770151..88770163
+
Mm9::chr7:122840702..122840734,-p@chr7:122840702..122840734
-
Mm9::chr7:125270099..125270105,-p@chr7:125270099..125270105
-
Mm9::chr7:134006938..134006958,+p6@Hirip3
Mm9::chr7:135603236..135603240,-p@chr7:135603236..135603240
-
Mm9::chr7:142884993..142885005,-p@chr7:142884993..142885005
-
Mm9::chr7:142885130..142885141,-p@chr7:142885130..142885141
-
Mm9::chr7:142886047..142886079,-p@chr7:142886047..142886079
-
Mm9::chr7:142886120..142886146,-p@chr7:142886120..142886146
-
Mm9::chr7:142886686..142886695,-p@chr7:142886686..142886695
-
Mm9::chr7:142886773..142886784,-p@chr7:142886773..142886784
-
Mm9::chr7:142887212..142887221,-p@chr7:142887212..142887221
-
Mm9::chr7:142887234..142887257,-p@chr7:142887234..142887257
-
Mm9::chr7:142887273..142887303,-p@chr7:142887273..142887303
-
Mm9::chr7:142887353..142887366,-p@chr7:142887353..142887366
-
Mm9::chr7:142887406..142887413,-p@chr7:142887406..142887413
-
Mm9::chr7:142887429..142887467,-p@chr7:142887429..142887467
-
Mm9::chr7:142887471..142887487,-p@chr7:142887471..142887487
-
Mm9::chr7:142887547..142887558,-p@chr7:142887547..142887558
-
Mm9::chr7:142887575..142887597,-p@chr7:142887575..142887597
-
Mm9::chr7:142889281..142889283,-p@chr7:142889281..142889283
-
Mm9::chr7:142889554..142889565,-p@chr7:142889554..142889565
-
Mm9::chr7:142889590..142889611,-p@chr7:142889590..142889611
-
Mm9::chr7:142889613..142889641,-p@chr7:142889613..142889641
-
Mm9::chr7:142889690..142889708,-p@chr7:142889690..142889708
-
Mm9::chr7:142889741..142889759,-p@chr7:142889741..142889759
-
Mm9::chr7:142890447..142890467,-p@chr7:142890447..142890467
-
Mm9::chr7:142890547..142890580,-p@chr7:142890547..142890580
-
Mm9::chr7:142891682..142891706,-p@chr7:142891682..142891706
-
Mm9::chr7:142891725..142891736,-p@chr7:142891725..142891736
-
Mm9::chr7:142891858..142891873,-p@chr7:142891858..142891873
-
Mm9::chr7:142892026..142892058,-p@chr7:142892026..142892058
-
Mm9::chr7:142892067..142892078,-p@chr7:142892067..142892078
-
Mm9::chr7:142892082..142892103,-p@chr7:142892082..142892103
-
Mm9::chr7:142892166..142892177,-p@chr7:142892166..142892177
-
Mm9::chr7:142892229..142892241,-p@chr7:142892229..142892241
-
Mm9::chr7:142892246..142892256,-p@chr7:142892246..142892256
-
Mm9::chr7:142892301..142892320,-p@chr7:142892301..142892320
-
Mm9::chr7:142892403..142892417,-p@chr7:142892403..142892417
-
Mm9::chr7:142892438..142892450,-p@chr7:142892438..142892450
-
Mm9::chr7:142892475..142892490,-p@chr7:142892475..142892490
-
Mm9::chr7:142892524..142892540,-p@chr7:142892524..142892540
-
Mm9::chr7:142892569..142892574,-p@chr7:142892569..142892574
-
Mm9::chr7:142892587..142892598,-p@chr7:142892587..142892598
-
Mm9::chr7:142892639..142892646,-p@chr7:142892639..142892646
-
Mm9::chr7:142892656..142892667,-p@chr7:142892656..142892667
-
Mm9::chr7:142892681..142892692,-p@chr7:142892681..142892692
-
Mm9::chr7:142892735..142892754,-p@chr7:142892735..142892754
-
Mm9::chr7:142893611..142893623,-p@chr7:142893611..142893623
-
Mm9::chr7:142893672..142893712,-p@chr7:142893672..142893712
-
Mm9::chr7:142895807..142895838,-p@chr7:142895807..142895838
-
Mm9::chr7:142895874..142895900,-p@chr7:142895874..142895900
-
Mm9::chr7:142896097..142896110,-p@chr7:142896097..142896110
-
Mm9::chr7:142896117..142896130,-p@chr7:142896117..142896130
-
Mm9::chr7:142896323..142896344,-p@chr7:142896323..142896344
-
Mm9::chr7:142896417..142896429,-p@chr7:142896417..142896429
-
Mm9::chr7:142896435..142896461,-p@chr7:142896435..142896461
-
Mm9::chr7:142897328..142897344,-p@chr7:142897328..142897344
-
Mm9::chr7:142897352..142897364,-p@chr7:142897352..142897364
-
Mm9::chr7:142897447..142897462,-p@chr7:142897447..142897462
-
Mm9::chr7:142899921..142899938,-p@chr7:142899921..142899938
-
Mm9::chr7:56122293..56122313,-p@chr7:56122293..56122313
-
Mm9::chr7:87358826..87358843,+p@chr7:87358826..87358843
+
Mm9::chr8:123012442..123012469,+p10@Gse1
Mm9::chr8:24172923..24172925,+p@chr8:24172923..24172925
+
Mm9::chr8:54687177..54687180,-p@chr8:54687177..54687180
-
Mm9::chr8:87359420..87359448,-p@chr8:87359420..87359448
-
Mm9::chr9:15130979..15131003,-p1@ENSMUST00000104206
Mm9::chr9:20730288..20730298,-p@chr9:20730288..20730298
-
Mm9::chr9:20742543..20742558,-p@chr9:20742543..20742558
-
Mm9::chr9:48127454..48127459,-p@chr9:48127454..48127459
-
Mm9::chr9:58074841..58074856,-p@chr9:58074841..58074856
-
Mm9::chr9:66293434..66293446,+p@chr9:66293434..66293446
+
Mm9::chr9:66295853..66295876,+p@chr9:66295853..66295876
+
Mm9::chr9:70489207..70489210,-p@chr9:70489207..70489210
-
Mm9::chrX:137532844..137532855,+p@chrX:137532844..137532855
+
Mm9::chrX:137585036..137585047,+p@chrX:137585036..137585047
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0030261chromosome condensation0.00355085442258724
GO:0000279M phase0.00658639189895931
GO:0051301cell division0.00658639189895931
GO:0000793condensed chromosome0.00658639189895931
GO:0007059chromosome segregation0.00658639189895931
GO:0022403cell cycle phase0.00658639189895931
GO:0005694chromosome0.0125972568877554
GO:0003951NAD+ kinase activity0.015478993429088
GO:0005784translocon complex0.015478993429088
GO:0030507spectrin binding0.015478993429088
GO:0005730nucleolus0.0170289392113143
GO:0005791rough endoplasmic reticulum0.0226118251666821
GO:0030867rough endoplasmic reticulum membrane0.0226118251666821
GO:0022402cell cycle process0.0226118251666821
GO:0003918DNA topoisomerase (ATP-hydrolyzing) activity0.0244190999857556
GO:0006259DNA metabolic process0.0244190999857556
GO:0007067mitosis0.0244190999857556
GO:0000087M phase of mitotic cell cycle0.0244190999857556
GO:0040016embryonic cleavage0.0244190999857556
GO:0043232intracellular non-membrane-bound organelle0.0257644224551713
GO:0043228non-membrane-bound organelle0.0257644224551713
GO:0007049cell cycle0.0257644224551713
GO:0003916DNA topoisomerase activity0.0257644224551713
GO:0030866cortical actin cytoskeleton organization and biogenesis0.0257644224551713
GO:0006265DNA topological change0.0278194797246813
GO:0030865cortical cytoskeleton organization and biogenesis0.0296528973411352
GO:0000278mitotic cell cycle0.0296528973411352
GO:0007076mitotic chromosome condensation0.0358468670272311
GO:0000070mitotic sister chromatid segregation0.0437132389986141
GO:0000819sister chromatid segregation0.0437132389986141
GO:0006613cotranslational protein targeting to membrane0.0447134875203927
GO:0043231intracellular membrane-bound organelle0.0447134875203927
GO:0043227membrane-bound organelle0.0447134875203927
GO:0006289nucleotide-excision repair0.0476041912319939



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
primordium8.97e-12134
foregut5.93e-1080
subdivision of trunk6.14e-0866
trunk region element1.95e-0779
immaterial anatomical entity5.52e-0779
organism subdivision8.85e-07150


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10
MA0004.10.184041
MA0006.10.000113723
MA0007.10.00802644
MA0009.10.277483
MA0014.12.82027e-12
MA0017.10.0351813
MA0019.10.029332
MA0024.10.0198246
MA0025.10.100139
MA0027.11.2451
MA0028.13.28988e-05
MA0029.11.30212
MA0030.10.203233
MA0031.10.164273
MA0038.10.26722
MA0040.10.542541
MA0041.14.07844
MA0042.14.59233
MA0043.10.190366
MA0046.10.0352363
MA0048.18.72798e-07
MA0050.10.758227
MA0051.10.165162
MA0052.10.560666
MA0055.12.6491e-06
MA0056.10
MA0057.12.67788e-07
MA0058.10.0107964
MA0059.10.101815
MA0060.11.22785e-05
MA0061.10.0316509
MA0063.10
MA0066.10.0671373
MA0067.10.153392
MA0068.10.00354581
MA0069.10.30663
MA0070.10.122873
MA0071.10.401928
MA0072.10.83073
MA0073.10
MA0074.11.10018
MA0076.11.74504e-05
MA0077.10.0240074
MA0078.10.78147
MA0081.10.440048
MA0083.10.189669
MA0084.10.367529
MA0087.10.635667
MA0088.11.58116e-09
MA0089.10
MA0090.10.00546881
MA0091.12.18182
MA0092.10.122426
MA0093.10.13713
MA0095.10
MA0098.10
MA0100.10.0388455
MA0101.10.116172
MA0103.10.122044
MA0105.12.11861e-05
MA0106.10.0506362
MA0107.10.067948
MA0108.20.223085
MA0109.10
MA0111.10.0439714
MA0113.10.0927648
MA0114.10.00394138
MA0115.10.428384
MA0116.10.000450324
MA0117.10.165326
MA0119.10.00222225
MA0122.10.048323
MA0124.10.398136
MA0125.11.07137
MA0130.10
MA0131.10.00499728
MA0132.10
MA0133.10
MA0135.10.838356
MA0136.10.0564407
MA0139.10.0239685
MA0140.10.085866
MA0141.12.10091
MA0142.13.36446
MA0143.11.33489
MA0144.10.324474
MA0145.14.64152e-05
MA0146.12.12152e-15
MA0147.10.00111135
MA0148.10.472602
MA0149.118.0923
MA0062.25.64933e-07
MA0035.20.278591
MA0039.20
MA0138.20.00455179
MA0002.20.065219
MA0137.20.0604206
MA0104.22.33637e-05
MA0047.20.151813
MA0112.27.62801e-06
MA0065.24.82605e-05
MA0150.10.661636
MA0151.10
MA0152.10.609516
MA0153.10.239973
MA0154.12.25699e-05
MA0155.10.000386302
MA0156.10.000543853
MA0157.10.966042
MA0158.10
MA0159.10.00902543
MA0160.10.34089
MA0161.10
MA0162.12.26617e-15
MA0163.14.26296e-10
MA0164.11.22921
MA0080.21.08449
MA0018.20.0630264
MA0099.20.167133
MA0079.20
MA0102.21.05086
MA0258.10.00238969
MA0259.10.00196296
MA0442.10
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