FFCP PHASE1:Hg19::chr15:33022885..33022907,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=26585|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2001|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000322805_5end|coexpression_cluster_id=C316|description=CAGE_peak_12_at_GREM1_5end|id=chr15:33022885..33022907,+|ontology_enrichment_celltype=CL:0000055!1.77e-27!180;CL:0000057!3.73e-26!75;CL:0002620!2.14e-18!23;CL:0000048!1.50e-17!430;CL:0000723!9.01e-17!436;CL:0000034!3.14e-16!444;CL:0002334!1.09e-13!12;CL:0000680!4.93e-12!57;CL:0000056!4.93e-12!57;CL:0000355!4.93e-12!57;CL:0000192!3.17e-10!42;CL:0000514!3.17e-10!42;CL:0000187!4.97e-10!54;CL:0002320!1.50e-09!365;CL:0002371!1.86e-09!591;CL:0000134!4.83e-09!358;CL:0000183!1.76e-08!59;CL:0000144!1.85e-08!625;CL:0000359!1.94e-08!32;CL:0000393!3.31e-08!60;CL:0000211!3.31e-08!60;CL:0000499!3.32e-07!27;CL:0000219!4.05e-07!390|ontology_enrichment_celltype_v019=CL:0002334;2.83e-16;12!CL:0002620;3.71e-16;23!CL:0002579;2.58e-09;3!CL:0002539;2.88e-09;10!CL:0002580;2.14e-08;3!CL:0000057;4.39e-08;73!CL:0000197;3.73e-07;6!CL:0000098;3.73e-07;6!CL:0002167;3.73e-07;6|ontology_enrichment_celltype_v019_2=CL:0000057,5.25e-25,76;CL:0002334,2.45e-16,12;CL:0002620,4.47e-16,23;CL:0000048,3.20e-11,427;CL:0000723,7.48e-11,433;CL:0000034,2.23e-10,441;CL:0002579,2.29e-09,3;CL:0002539,2.81e-09,10;CL:0002580,2.57e-08,3;CL:0002320,8.66e-08,361;CL:0000136,9.15e-08,15;CL:0000134,1.19e-07,354;CL:0000197,2.89e-07,6;CL:0000098,2.89e-07,6;CL:0002167,2.89e-07,6|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:17!3.64e-07!5;DOID:450!3.64e-07!5;DOID:66!3.64e-07!5;DOID:423!3.64e-07!5;DOID:0080000!3.64e-07!5;DOID:11722!3.64e-07!5|ontology_enrichment_disease_v019=DOID:17;2.78e-13;5!DOID:450;2.78e-13;5!DOID:66;2.78e-13;5!DOID:423;2.78e-13;5!DOID:0080000;2.78e-13;5!DOID:11722;2.78e-13;5|ontology_enrichment_disease_v019_2=DOID:17,2.52e-13,5;DOID:450,2.52e-13,5;DOID:66,2.52e-13,5;DOID:423,2.52e-13,5;DOID:0080000,2.52e-13,5;DOID:11722,2.52e-13,5|ontology_enrichment_uberon=UBERON:0000914!3.13e-18!83;UBERON:0002329!3.13e-18!83;UBERON:0003077!3.13e-18!83;UBERON:0003059!3.13e-18!83;UBERON:0007282!3.13e-18!83;UBERON:0009618!3.13e-18!83;UBERON:0007285!3.13e-18!83;UBERON:0004290!5.92e-14!70;UBERON:0002097!1.12e-13!40;UBERON:0002199!1.52e-13!45;UBERON:0002416!1.52e-13!45;UBERON:0000486!9.24e-12!82;UBERON:0003102!4.88e-11!95;UBERON:0002385!1.14e-10!63;UBERON:0001015!1.14e-10!63;UBERON:0000383!1.14e-10!63;UBERON:0001134!1.29e-10!61;UBERON:0002036!1.29e-10!61;UBERON:0003082!1.29e-10!61;UBERON:0005256!1.69e-10!143;UBERON:0002384!5.03e-10!375;UBERON:0003688!1.90e-08!6;UBERON:0002358!1.90e-08!6;UBERON:0003684!1.90e-08!6;UBERON:0001178!1.90e-08!6;UBERON:0001135!9.10e-08!15;UBERON:0002100!2.11e-07!216|ontology_enrichment_uberon_v019=UBERON:0003688;5.73e-12;6!UBERON:0002358;5.73e-12;6!UBERON:0003684;5.73e-12;6!UBERON:0001178;5.73e-12;6!UBERON:0002097;1.15e-10;41!UBERON:0004237;2.88e-09;10!UBERON:0004695;2.88e-09;10!UBERON:0002111;2.88e-09;10!UBERON:0004178;2.88e-09;10!UBERON:0002199;2.77e-08;46!UBERON:0002416;2.77e-08;46!UBERON:0004457;8.14e-08;9!UBERON:0000042;8.14e-08;9!UBERON:0001135;8.58e-08;15|ontology_enrichment_uberon_v019_2=UBERON:0002097,2.53e-12,41;UBERON:0002199,4.50e-12,46;UBERON:0002416,4.50e-12,46;UBERON:0003688,6.23e-12,6;UBERON:0002358,6.23e-12,6;UBERON:0003684,6.23e-12,6;UBERON:0001178,6.23e-12,6;UBERON:0004237,2.81e-09,10;UBERON:0004695,2.81e-09,10;UBERON:0002111,2.81e-09,10;UBERON:0004178,2.81e-09,10;UBERON:0002384,1.87e-08,371;UBERON:0003102,3.93e-08,99;UBERON:0001135,9.05e-08,15|phase1_expression=1.45342703416445,2.99740733447376,0.704772020479856,4.00293193412522,4.02264984984559,3.48935409640147,0,0,0,0,0,0,0,0.247532705920093,1.32558950291166,2.6893005858071,3.61616716814386,2.19093027116212,3.90346239032406,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.579386075843295,2.3858578411533,0.973269740605272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.93943903390637,0.12663051166458,0.794455084879313,0.860509862246441,1.06400514659507,0,0,0.49333509683432,0,0,0,0,0,0,0.936480230490962,0,0.298897361103602,0.23486899728753,0.323745888736263,0.421352420106746,0,0.122834317311768,0.103325781175765,1.18800285728205,5.93440630268536,0,0,0,0.125118519871964,0,3.95079858792754,4.90380473278431,10.3664260645552,0,2.15267562826634,1.92201649936711,3.39091041855299,4.80145753735044,2.16410311400722,1.28820270022815,2.41951913231067,0.843881661206331,3.11798416515836,2.01947019395292,3.03764665519588,0.323292113637624,2.84007674013291,1.91428986632517,0.508681776931463,0,0,0,0,0,0,0.10366105501537,0,0,4.69348596989448,1.92972281457866,0,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=26585 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2001 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000322805_5end | |||
|coexpression_cluster_id=C316 | |||
|description=CAGE_peak_12_at_GREM1_5end | |||
|id=chr15:33022885..33022907,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.77e-27!180;CL:0000057!3.73e-26!75;CL:0002620!2.14e-18!23;CL:0000048!1.50e-17!430;CL:0000723!9.01e-17!436;CL:0000034!3.14e-16!444;CL:0002334!1.09e-13!12;CL:0000680!4.93e-12!57;CL:0000056!4.93e-12!57;CL:0000355!4.93e-12!57;CL:0000192!3.17e-10!42;CL:0000514!3.17e-10!42;CL:0000187!4.97e-10!54;CL:0002320!1.50e-09!365;CL:0002371!1.86e-09!591;CL:0000134!4.83e-09!358;CL:0000183!1.76e-08!59;CL:0000144!1.85e-08!625;CL:0000359!1.94e-08!32;CL:0000393!3.31e-08!60;CL:0000211!3.31e-08!60;CL:0000499!3.32e-07!27;CL:0000219!4.05e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0002334;2.83e-16;12!CL:0002620;3.71e-16;23!CL:0002579;2.58e-09;3!CL:0002539;2.88e-09;10!CL:0002580;2.14e-08;3!CL:0000057;4.39e-08;73!CL:0000197;3.73e-07;6!CL:0000098;3.73e-07;6!CL:0002167;3.73e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.25e-25,76;CL:0002334,2.45e-16,12;CL:0002620,4.47e-16,23;CL:0000048,3.20e-11,427;CL:0000723,7.48e-11,433;CL:0000034,2.23e-10,441;CL:0002579,2.29e-09,3;CL:0002539,2.81e-09,10;CL:0002580,2.57e-08,3;CL:0002320,8.66e-08,361;CL:0000136,9.15e-08,15;CL:0000134,1.19e-07,354;CL:0000197,2.89e-07,6;CL:0000098,2.89e-07,6;CL:0002167,2.89e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!3.64e-07!5;DOID:450!3.64e-07!5;DOID:66!3.64e-07!5;DOID:423!3.64e-07!5;DOID:0080000!3.64e-07!5;DOID:11722!3.64e-07!5 | |||
|ontology_enrichment_disease_v019=DOID:17;2.78e-13;5!DOID:450;2.78e-13;5!DOID:66;2.78e-13;5!DOID:423;2.78e-13;5!DOID:0080000;2.78e-13;5!DOID:11722;2.78e-13;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,2.52e-13,5;DOID:450,2.52e-13,5;DOID:66,2.52e-13,5;DOID:423,2.52e-13,5;DOID:0080000,2.52e-13,5;DOID:11722,2.52e-13,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!3.13e-18!83;UBERON:0002329!3.13e-18!83;UBERON:0003077!3.13e-18!83;UBERON:0003059!3.13e-18!83;UBERON:0007282!3.13e-18!83;UBERON:0009618!3.13e-18!83;UBERON:0007285!3.13e-18!83;UBERON:0004290!5.92e-14!70;UBERON:0002097!1.12e-13!40;UBERON:0002199!1.52e-13!45;UBERON:0002416!1.52e-13!45;UBERON:0000486!9.24e-12!82;UBERON:0003102!4.88e-11!95;UBERON:0002385!1.14e-10!63;UBERON:0001015!1.14e-10!63;UBERON:0000383!1.14e-10!63;UBERON:0001134!1.29e-10!61;UBERON:0002036!1.29e-10!61;UBERON:0003082!1.29e-10!61;UBERON:0005256!1.69e-10!143;UBERON:0002384!5.03e-10!375;UBERON:0003688!1.90e-08!6;UBERON:0002358!1.90e-08!6;UBERON:0003684!1.90e-08!6;UBERON:0001178!1.90e-08!6;UBERON:0001135!9.10e-08!15;UBERON:0002100!2.11e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;5.73e-12;6!UBERON:0002358;5.73e-12;6!UBERON:0003684;5.73e-12;6!UBERON:0001178;5.73e-12;6!UBERON:0002097;1.15e-10;41!UBERON:0004237;2.88e-09;10!UBERON:0004695;2.88e-09;10!UBERON:0002111;2.88e-09;10!UBERON:0004178;2.88e-09;10!UBERON:0002199;2.77e-08;46!UBERON:0002416;2.77e-08;46!UBERON:0004457;8.14e-08;9!UBERON:0000042;8.14e-08;9!UBERON:0001135;8.58e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,2.53e-12,41;UBERON:0002199,4.50e-12,46;UBERON:0002416,4.50e-12,46;UBERON:0003688,6.23e-12,6;UBERON:0002358,6.23e-12,6;UBERON:0003684,6.23e-12,6;UBERON:0001178,6.23e-12,6;UBERON:0004237,2.81e-09,10;UBERON:0004695,2.81e-09,10;UBERON:0002111,2.81e-09,10;UBERON:0004178,2.81e-09,10;UBERON:0002384,1.87e-08,371;UBERON:0003102,3.93e-08,99;UBERON:0001135,9.05e-08,15 | |||
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|short_description=p12@GREM1 | |||
}} |
Revision as of 06:35, 11 September 2013
Short description: | p12@GREM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_GREM1_5end |
Coexpression cluster: | C316_hepatic_Hair_Fibroblast_spindle_Preadipocyte_tenocyte_Ewing |
Association with transcript: | 0bp_to_ENST00000322805_5end |
EntrezGene: | GREM1 |
HGNC: | 2001 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.25e-25 | 76 |
preadipocyte | 2.45e-16 | 12 |
skin fibroblast | 4.47e-16 | 23 |
multi fate stem cell | 3.20e-11 | 427 |
somatic stem cell | 7.48e-11 | 433 |
stem cell | 2.23e-10 | 441 |
omentum preadipocyte | 2.29e-09 | 3 |
aortic smooth muscle cell | 2.81e-09 | 10 |
preadipocyte of the breast | 2.57e-08 | 3 |
connective tissue cell | 8.66e-08 | 361 |
fat cell | 9.15e-08 | 15 |
mesenchymal cell | 1.19e-07 | 354 |
receptor cell | 2.89e-07 | 6 |
sensory epithelial cell | 2.89e-07 | 6 |
olfactory epithelial cell | 2.89e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
skin of body | 2.53e-12 | 41 |
integument | 4.50e-12 | 46 |
integumental system | 4.50e-12 | 46 |
omentum | 6.23e-12 | 6 |
peritoneum | 6.23e-12 | 6 |
abdominal cavity | 6.23e-12 | 6 |
visceral peritoneum | 6.23e-12 | 6 |
blood vessel smooth muscle | 2.81e-09 | 10 |
arterial system smooth muscle | 2.81e-09 | 10 |
artery smooth muscle tissue | 2.81e-09 | 10 |
aorta smooth muscle tissue | 2.81e-09 | 10 |
connective tissue | 1.87e-08 | 371 |
surface structure | 3.93e-08 | 99 |
smooth muscle tissue | 9.05e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 2.52e-13 | 5 |
myotonic disease | 2.52e-13 | 5 |
muscle tissue disease | 2.52e-13 | 5 |
myopathy | 2.52e-13 | 5 |
muscular disease | 2.52e-13 | 5 |
myotonic dystrophy | 2.52e-13 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.