FFCP PHASE1:Hg19::chr15:74753600..74753611,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=440288|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000499217,NR_038448,NR_038449,uc002aya.2_5end|description=CAGE_peak_3_at_LOC440288_5end|id=chr15:74753600..74753611,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002032;7.08e-11;1!CL:0000222;7.08e-11;1!CL:0002553;7.08e-11;1!CL:0000557;7.08e-11;1|ontology_enrichment_celltype_v019_2=CL:0002553,3.41e-11,1|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:162!9.18e-09!235;DOID:14566!1.87e-08!239;DOID:2531!3.31e-08!51;DOID:0060083!3.31e-08!51|ontology_enrichment_disease_v019=DOID:630;7.08e-11;1!DOID:0050177;7.08e-11;1!DOID:0050427;7.08e-11;1|ontology_enrichment_disease_v019_2=DOID:630,6.77e-11,1;DOID:0050177,6.77e-11,1;DOID:0050427,6.77e-11,1|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0002038;7.08e-11;1!UBERON:0009661;7.08e-11;1!UBERON:0002950;7.08e-11;1!UBERON:0001891;7.08e-11;1|ontology_enrichment_uberon_v019_2=UBERON:0002038,1.77e-10,1;UBERON:0009661,1.77e-10,1;UBERON:0002950,1.77e-10,1;UBERON:0001891,1.77e-10,1;UBERON:0009616,1.77e-10,1;UBERON:0010286,1.77e-10,1|phase1_expression=0.181678379270557,0,0.281908808191942,0,0.446961094427288,0,0,0.631719873426831,0,0.245733936501509,0.697801167972428,0.436882744260345,0.527533956456907,0,0,0,0,0,0,0.123121058076788,0,0.313454721478088,0,0.273748850145768,0.125542639594803,0.840547463227464,0.903106483949403,0.708397031823113,0,0,0,0,0,0,0.46480320348181,0.142169232487422,0.587200878669695,0,0,0,0,0,0,0,0,0,0,0.411167888021826,0,0.28769239232215,0,0.236482229888585,0.344745680736619,0.645484683583826,0,0.752969358170419,0,0,0,0,0,0.329851300186716,0,0,0,0,0,0,0,0.217188844705117,0,0.368277635987565,0.316462387440884,0,0,0,0.22465726229299,0,0,0,0,0,0,0,0.889509253863555,0,0,0,0,0,0.569212969109448,0,0.382273228125229,0,0,0.263384084775077,0,0.393010762749165,0,0.167186495390678,0,0,0,0.222820913770347,0.589211814949674,0,0.541607727530031,0,0,0,0,0,0.14828656316206,0,0,0.226618685395132,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0.144846518960824,0,0,0.378139268656271,0,0.087834785693126,1.57174890597255,0,0,0,0,0,0.238490624305342,0,0.74291500265913,0,0,0,0,0,0,0.208994966536811,0.258416759169329,0,0,0,0,0.24406205754817,0,0,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0.436094052142534,0,0,0.264818361626438,0,0,0,0,0.24666754841716,0,0.134710672069688,0,0,0,0.468642863667593,0,0,0,0.23486899728753,0,0.561803226808994,0,0,0,0,0,0,0,0.168336113954066,0.125118519871964,0,0,0,0,0,0.179389635688862,0.213557388818567,0,0.300091096084402,0.206105058476878,0,0,0,0.0974370051611986,0,0.0920498986422993,0,0,0.302256294682921,0.169560592310488,0.193260853163297,0,0,0.365921118388786,0.132529768321485,0.348581828608555,0.207322110030741,0,0.36497735907583,0,0,0,0,0,0.118306800039844,0.505754070234305,0.241011029883482,0.441175890929576,0,0.474541238222193,0.269662616320329,0.392442930250692,0.38474715694639,0,0,0,0,0,0,0,0.441463099414651,0.737930631258681,0.171567810298526,0.109750285408626,0,0.100528972411631,0.0925884451585296,0,0,1.44331342025273,0.115930404975077,0.117408694235822,0,0,0,0,0.858486162094873,0,0,0.297262324577456,0,0,0.141775097242386,0.0895585227028483,0,0,0.492663237895943,0.088048434013226,0,0,0,0.190493682876507,0,0,0,0.102827492703324,0.300343057843917,0,0.112131084345361,0.87192013766656,0.07333828582095,0,0,0,0,0,0.257207374262142,1.41849132023278,0,0,0,0,0,0,0.791951872933429,0.602878754119172,0,0.199945982364114,0,0,0,0,0,0,0.289562613335158,0,0,0.448340575974109,0,0.215627574859517,0.128343036279748,0,0,0,0.335032530668698,0,0,0,0,0,0,0,0,0.356857977594324,0,0.234282829985426,0,0,0,0,0,0,0,0,0.206768026122887,0,0,0.303127571446259,0,0.604780586659361,0,0.153461973288062,0,0.128139149255701,0,0.160853921143607,0,0,0,0.0821271560138091,0,0,0.120859449591622,0,0.0920809889358963,0.229628896329213,0.182091168006717,0.131124414959424,0,0.231046011313244,0,0,0.105551628892876,0,0,0,0,0.270946437543853,0,0.509752546090077,0,0.223874754722178,0,0.261435451024901,0.256450125116389,0,0,0.103041011647722,0.0915694648183434,0,0,0,0,0,0.154048617114644,0,0.137836572484531,0.107420244868274,0,0,0.178064071293475,0.330569830721956,0,0.255225424989168,0,0,0.31481234683064,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0.876901770507525,0,0.655894752046633,0.202910376962704,0,0,0,0.0982490410131212,0,0,0,0,0,0.349934720244983,0.288666338176536,0,0,0.282431402330337,0,0,0,0,0,0,0,0.238231775457789,0,0.648473311192717,0,0,0.320472213382419,0,0,0.185803175125719,0.432807638929335,0.284567373393656,0.956557636372934,0.199579371432817,0.5745161103971,0,0,0.561594356226918,0,0,0,0.338583555603207,0.321176150207399,0.201799707191048,0,0.343505344755765,1.53620382154229,0.671028323677248,0.667396566847634,0,1.11362469558097,1.23087398947712,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=440288 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000499217,NR_038448,NR_038449,uc002aya.2_5end | |||
|description=CAGE_peak_3_at_LOC440288_5end | |||
|id=chr15:74753600..74753611,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002032;7.08e-11;1!CL:0000222;7.08e-11;1!CL:0002553;7.08e-11;1!CL:0000557;7.08e-11;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002553,3.41e-11,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!9.18e-09!235;DOID:14566!1.87e-08!239;DOID:2531!3.31e-08!51;DOID:0060083!3.31e-08!51 | |||
|ontology_enrichment_disease_v019=DOID:630;7.08e-11;1!DOID:0050177;7.08e-11;1!DOID:0050427;7.08e-11;1 | |||
|ontology_enrichment_disease_v019_2=DOID:630,6.77e-11,1;DOID:0050177,6.77e-11,1;DOID:0050427,6.77e-11,1 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002038;7.08e-11;1!UBERON:0009661;7.08e-11;1!UBERON:0002950;7.08e-11;1!UBERON:0001891;7.08e-11;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002038,1.77e-10,1;UBERON:0009661,1.77e-10,1;UBERON:0002950,1.77e-10,1;UBERON:0001891,1.77e-10,1;UBERON:0009616,1.77e-10,1;UBERON:0010286,1.77e-10,1 | |||
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| |||
|short_description=p3@LOC440288 | |||
}} |
Revision as of 08:14, 11 September 2013
Short description: | p3@LOC440288 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_LOC440288_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000499217, NR_038448, NR_038449, uc002aya.2_5end |
EntrezGene: | LOC440288 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lung fibroblast | 3.41e-11 | 1 |
Ontology term | p-value | n |
---|---|---|
substantia nigra | 1.77e-10 | 1 |
midbrain nucleus | 1.77e-10 | 1 |
regional part of midbrain | 1.77e-10 | 1 |
midbrain | 1.77e-10 | 1 |
presumptive midbrain | 1.77e-10 | 1 |
midbrain neural tube | 1.77e-10 | 1 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 6.77e-11 | 1 |
monogenic disease | 6.77e-11 | 1 |
xeroderma pigmentosum | 6.77e-11 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.