FFCP PHASE1:Hg19::chr19:18426858..18426889,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=25804|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=17259|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_AB463842,EU832676,EU832756_5end|coexpression_cluster_id=C64|description=CAGE_peak_4_at_LSM4_5end|id=chr19:18426858..18426889,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000097;8.75e-45;5!CL:0000163;6.96e-25;9!CL:0002553;7.88e-10;1!CL:0000763;3.20e-07;100|ontology_enrichment_celltype_v019_2=CL:0000097,1.00e-44,5;CL:0002028,1.00e-44,5;CL:0000163,7.50e-25,9;CL:0000763,2.10e-13,108;CL:0000049,2.10e-13,108;CL:0002553,5.79e-10,1;CL:0002032,1.40e-09,161;CL:0000837,1.40e-09,161;CL:0000037,4.49e-09,168;CL:0000988,1.75e-08,177|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:8692;2.32e-20;31!DOID:1240;3.21e-16;39!DOID:2531;1.05e-10;51!DOID:0060083;1.05e-10;51!DOID:1036;3.28e-10;8!DOID:8552;4.44e-10;1!DOID:5093;1.31e-09;4!DOID:1612;1.31e-09;4|ontology_enrichment_disease_v019_2=DOID:8692,1.99e-21,31;DOID:1240,1.21e-20,39;DOID:2531,1.96e-15,51;DOID:0060083,1.96e-15,51;DOID:8552,4.06e-10,1;DOID:1036,4.37e-10,8;DOID:5093,1.17e-09,4;DOID:1612,1.17e-09,4;DOID:0050686,2.16e-08,137|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,2.09340350391728,0,0,0,0.331397375727916,0,0.602694528023977,0,0,0,0.408001382488506,0,0.572471974262113,0.136874425072884,0.125542639594803,0.382067028739756,0.57470412614962,0.472264687882075,0,0,0,0.919421224478927,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150176892841506,0.16072558669708,0,0.19891667719909,0,0,0.546138611262131,0.889509253863555,0,0,0.574752439954483,0,0.954053754535364,0.569212969109448,0,0,0,0.560508562981536,0,0,0.786021525498329,0,0,0,0,0,0,0,0.221533894583621,0,0,0.130059347559878,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0.12786256184353,0.361439152384566,0,0.144846518960824,0,0,0.0945348171640679,0,0.087834785693126,0.0654895377488563,0,0.370784442784429,0.324547393654683,0.348259474598534,0,0.476981248610684,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0.12663051166458,0,0,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0.149448680551801,0,0.647491777472526,0.421352420106746,0,0,0,0,0,0,0,0,0.250237039743928,0,0,0.30648779579902,0.150238058906597,0,0,0,0.211931901159562,0,0,0,0,0,0,0,0,0,0,0,0.169560592310488,0,0.545492241181669,0,0,0.132529768321485,0,0.10366105501537,0,0,0,0,0,0,0.721879481669586,0,0,0,0.110293972732394,0.871517776369625,0,0.539325232640658,0,0.38474715694639,0,0,0,0,0,0,0,0,0,0.171567810298526,0.109750285408626,0,0.201057944823262,0.0925884451585296,0,0,1.44331342025273,0,0,0.144366447761074,0.925971025153221,0,1.58040879591855,3.43394464837949,0,0.234004265139238,0.148631162288728,0,0,0,0,0,0.766765358330422,18.7212030400459,42.087151458322,8.08579650609011,3.02651902175619,4.03975786964416,0,0.381988425558278,1.17217447210047,0,0.102827492703324,0.300343057843917,0,0,0.43596006883328,0.07333828582095,0,0,0.845302752556,0,0,0,0,0.266422179016099,0.142977993658148,0,0,0.325736184293735,0,0,0.301439377059586,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0.167516265334349,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664225598535437,0,0,0.195801157462741,0.686286847621712,0,0,0,0.303127571446259,0,0.30239029332968,0,0,0.280660094433074,0,0,0.160853921143607,0,0.154209693802656,0.177561725313127,0,0,0.116210378459959,0.241718899183244,0.200506470303285,0.0920809889358963,0.114814448164607,0,0,0.451199612907412,0,0,0,0.105551628892876,0,0.340187410553031,0,0,0.270946437543853,0,0,0,0,0,0,0.256450125116389,0.656029291399411,0.325378394664303,0,0,0,0,0,0,0,0.154048617114644,0.15350367472613,0.551346289938122,0.107420244868274,0.145016693914229,0.170453254832202,0.178064071293475,0.330569830721956,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0.318203247925937,0,0,0,0.117812402345686,0,0,0.842516912477962,0,0.243713489631284,0,0.136499911407986,0,0,0,0,0.438450885253763,0.578775534266688,0,0.202910376962704,0,0,0,0,0,0,0,0,0,0.349934720244983,0,0.670302275535787,0,0,0.43050537267123,0,0,0,0,0,0,0,0.411362273086194,0,0,0.79312517629427,0,0,0,0,0,0.0711418433484141,0.159426272728822,0,0,4.23347165447766,0.324621940274555,6.17753791849609,0,0.156679895773023,0,0.338583555603207,0,0,0,0.343505344755765,0,0.447352215784832,0,0,3.61928026063815,1.23087398947712,7.30230331885154,0.99921590399346,1.4098700508785,0,0,0.242721043499027,0,0,0,0.296964680832639,0,0,0,0,0,0.211125408127993,0,0,0.755798243562828,0,0.246169610922139,0,0,0,0,0.0986434056369336,0,0,0,0,0,0.260427761085233,0,0,0,0,0,0.344743373241465,0.583209226766509,0,0,0,0,0,0,0,0.21787692703798,0,0,0,0,0.0897576444097721,0.325942115766024,0,0.09159759340186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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=25804 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17259 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_AB463842,EU832676,EU832756_5end | |||
|coexpression_cluster_id=C64 | |||
|description=CAGE_peak_4_at_LSM4_5end | |||
|id=chr19:18426858..18426889,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000097;8.75e-45;5!CL:0000163;6.96e-25;9!CL:0002553;7.88e-10;1!CL:0000763;3.20e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,1.00e-44,5;CL:0002028,1.00e-44,5;CL:0000163,7.50e-25,9;CL:0000763,2.10e-13,108;CL:0000049,2.10e-13,108;CL:0002553,5.79e-10,1;CL:0002032,1.40e-09,161;CL:0000837,1.40e-09,161;CL:0000037,4.49e-09,168;CL:0000988,1.75e-08,177 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:8692;2.32e-20;31!DOID:1240;3.21e-16;39!DOID:2531;1.05e-10;51!DOID:0060083;1.05e-10;51!DOID:1036;3.28e-10;8!DOID:8552;4.44e-10;1!DOID:5093;1.31e-09;4!DOID:1612;1.31e-09;4 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,1.99e-21,31;DOID:1240,1.21e-20,39;DOID:2531,1.96e-15,51;DOID:0060083,1.96e-15,51;DOID:8552,4.06e-10,1;DOID:1036,4.37e-10,8;DOID:5093,1.17e-09,4;DOID:1612,1.17e-09,4;DOID:0050686,2.16e-08,137 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| |||
|short_description=p4@LSM4 | |||
}} |
Revision as of 19:26, 11 September 2013
Short description: | p4@LSM4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_LSM4_5end |
Coexpression cluster: | C64_Mast_chronic_acute_immature_chorionic_Basophils_Dendritic |
Association with transcript: | 0bp_to_AB463842, EU832676, EU832756_5end |
EntrezGene: | LSM4 |
HGNC: | 17259 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 1.00e-44 | 5 |
basophil mast progenitor cell | 1.00e-44 | 5 |
endocrine cell | 7.50e-25 | 9 |
myeloid cell | 2.10e-13 | 108 |
common myeloid progenitor | 2.10e-13 | 108 |
lung fibroblast | 5.79e-10 | 1 |
hematopoietic oligopotent progenitor cell | 1.40e-09 | 161 |
hematopoietic multipotent progenitor cell | 1.40e-09 | 161 |
hematopoietic stem cell | 4.49e-09 | 168 |
hematopoietic cell | 1.75e-08 | 177 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 1.99e-21 | 31 |
leukemia | 1.21e-20 | 39 |
hematologic cancer | 1.96e-15 | 51 |
immune system cancer | 1.96e-15 | 51 |
chronic myeloid leukemia | 4.06e-10 | 1 |
chronic leukemia | 4.37e-10 | 8 |
thoracic cancer | 1.17e-09 | 4 |
breast cancer | 1.17e-09 | 4 |
organ system cancer | 2.16e-08 | 137 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.