FFCP PHASE1:Hg19::chr2:177011059..177011079,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C1555|description=CAGE_peak_at_chr2:177011059..177011079,+|id=chr2:177011059..177011079,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0007297;1.46e-50;2!UBERON:0005754;3.15e-26;1!UBERON:0003918;5.02e-11;10!UBERON:0007687;5.02e-11;10!UBERON:0005795;8.06e-11;10|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:0060084;1.74e-09;3!DOID:127;1.74e-09;3!DOID:0060072;1.98e-07;4|ontology_enrichment_disease_v019_2=DOID:0060084,1.67e-09,3;DOID:127,1.67e-09,3;DOID:0060072,1.92e-07,4|ontology_enrichment_uberon=UBERON:0006947!1.49e-22!3;UBERON:0004054!1.49e-22!3;UBERON:0005904!4.63e-17!4;UBERON:0003135!3.79e-16!11;UBERON:0000489!5.90e-13!32;UBERON:0002113!4.79e-12!27;UBERON:0003918!4.79e-12!27;UBERON:0005095!4.79e-12!27;UBERON:0007687!4.79e-12!27;UBERON:0006554!1.73e-11!44;UBERON:0001008!3.34e-11!45;UBERON:0003101!3.92e-11!22;UBERON:0000079!3.92e-11!22;UBERON:0003133!1.82e-10!48;UBERON:0005156!3.40e-10!59;UBERON:0000990!3.40e-10!59;UBERON:0004175!9.12e-10!25;UBERON:0001301!1.05e-08!1;UBERON:0000998!1.13e-08!1;UBERON:0006868!1.13e-08!1;UBERON:0001000!1.22e-08!1;UBERON:0005352!1.22e-08!1;UBERON:0000473!1.62e-08!8;UBERON:0006834!1.88e-08!1;UBERON:0001155!1.02e-07!9;UBERON:0005172!4.85e-07!55;UBERON:0005173!4.85e-07!55|ontology_enrichment_uberon_v019=UBERON:0006947;1.01e-74;3!UBERON:0004054;1.01e-74;3!UBERON:0005904;2.60e-56;4!UBERON:0000998;3.15e-26;1!UBERON:0001301;3.15e-26;1!UBERON:0006868;3.15e-26;1!UBERON:0001000;4.61e-26;1!UBERON:0005352;4.61e-26;1!UBERON:0005795;6.72e-26;1!UBERON:0000058;4.42e-23;10!UBERON:0003135;4.65e-21;11!UBERON:0004175;2.50e-19;21!UBERON:0001155;6.51e-12;9!UBERON:0003101;6.70e-11;22!UBERON:0000079;6.70e-11;22!UBERON:0000059;6.34e-10;11!UBERON:0003133;4.99e-07;44|ontology_enrichment_uberon_v019_2=UBERON:0006947,1.01e-74,3;UBERON:0004054,1.01e-74,3;UBERON:0005904,2.60e-56,4;UBERON:0001301,2.78e-26,1;UBERON:0000998,3.58e-26,1;UBERON:0006868,3.58e-26,1;UBERON:0001000,4.61e-26,1;UBERON:0005352,4.61e-26,1;UBERON:0003135,4.65e-21,11;UBERON:0004175,2.48e-16,25;UBERON:0000058,1.64e-12,19;UBERON:0000080,4.18e-12,9;UBERON:0002120,4.18e-12,9;UBERON:0004875,4.18e-12,9;UBERON:0005721,4.18e-12,9;UBERON:0005754,4.18e-12,9;UBERON:0007297,4.18e-12,9;UBERON:0001155,6.51e-12,9;UBERON:0003101,6.70e-11,22;UBERON:0000079,6.70e-11,22;UBERON:0004876,4.42e-10,11;UBERON:0000059,6.34e-10,11;UBERON:0002113,2.31e-09,26;UBERON:0003918,2.31e-09,26;UBERON:0011143,2.31e-09,26;UBERON:0005095,2.31e-09,26;UBERON:0007687,2.31e-09,26;UBERON:0003887,2.55e-09,12;UBERON:0003133,1.02e-08,48;UBERON:0000489,5.94e-08,31;UBERON:0005156,3.68e-07,59;UBERON:0000990,3.68e-07,59|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.589405839739707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211103257785751,0,0,0,0,0,0,0,0,0.447749509444357,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.865554558968364,2.98578579323551,0,1.22206028986725,0,0,0,0,0,0,0,0,0,3.15667522279512,0,0,0,0,0.311064574191741,0,0,0,0,0,0,0,0,0,6.63961339319714,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0.394028536495991,8.07800657278971,0,0,0,0,0,0,0,0,1.63293680054705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.323474434190045,0,0,0.169732529954025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0,0,0,0,0,0,0.175871244359621,0,0,0,0,0,0,0,0,0,0,0,0,0.235479278551542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.35080575286394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0,0,0,0,0,0.682008283964155,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.733448665097199,2.03448089157869,0,0,0|short_description=p@chr2:177011059..177011079,+}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1555 | |||
|description=CAGE_peak_at_chr2:177011059..177011079,+ | |||
|id=chr2:177011059..177011079,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0007297;1.46e-50;2!UBERON:0005754;3.15e-26;1!UBERON:0003918;5.02e-11;10!UBERON:0007687;5.02e-11;10!UBERON:0005795;8.06e-11;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;1.74e-09;3!DOID:127;1.74e-09;3!DOID:0060072;1.98e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,1.67e-09,3;DOID:127,1.67e-09,3;DOID:0060072,1.92e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0006947!1.49e-22!3;UBERON:0004054!1.49e-22!3;UBERON:0005904!4.63e-17!4;UBERON:0003135!3.79e-16!11;UBERON:0000489!5.90e-13!32;UBERON:0002113!4.79e-12!27;UBERON:0003918!4.79e-12!27;UBERON:0005095!4.79e-12!27;UBERON:0007687!4.79e-12!27;UBERON:0006554!1.73e-11!44;UBERON:0001008!3.34e-11!45;UBERON:0003101!3.92e-11!22;UBERON:0000079!3.92e-11!22;UBERON:0003133!1.82e-10!48;UBERON:0005156!3.40e-10!59;UBERON:0000990!3.40e-10!59;UBERON:0004175!9.12e-10!25;UBERON:0001301!1.05e-08!1;UBERON:0000998!1.13e-08!1;UBERON:0006868!1.13e-08!1;UBERON:0001000!1.22e-08!1;UBERON:0005352!1.22e-08!1;UBERON:0000473!1.62e-08!8;UBERON:0006834!1.88e-08!1;UBERON:0001155!1.02e-07!9;UBERON:0005172!4.85e-07!55;UBERON:0005173!4.85e-07!55 | |||
|ontology_enrichment_uberon_v019=UBERON:0006947;1.01e-74;3!UBERON:0004054;1.01e-74;3!UBERON:0005904;2.60e-56;4!UBERON:0000998;3.15e-26;1!UBERON:0001301;3.15e-26;1!UBERON:0006868;3.15e-26;1!UBERON:0001000;4.61e-26;1!UBERON:0005352;4.61e-26;1!UBERON:0005795;6.72e-26;1!UBERON:0000058;4.42e-23;10!UBERON:0003135;4.65e-21;11!UBERON:0004175;2.50e-19;21!UBERON:0001155;6.51e-12;9!UBERON:0003101;6.70e-11;22!UBERON:0000079;6.70e-11;22!UBERON:0000059;6.34e-10;11!UBERON:0003133;4.99e-07;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006947,1.01e-74,3;UBERON:0004054,1.01e-74,3;UBERON:0005904,2.60e-56,4;UBERON:0001301,2.78e-26,1;UBERON:0000998,3.58e-26,1;UBERON:0006868,3.58e-26,1;UBERON:0001000,4.61e-26,1;UBERON:0005352,4.61e-26,1;UBERON:0003135,4.65e-21,11;UBERON:0004175,2.48e-16,25;UBERON:0000058,1.64e-12,19;UBERON:0000080,4.18e-12,9;UBERON:0002120,4.18e-12,9;UBERON:0004875,4.18e-12,9;UBERON:0005721,4.18e-12,9;UBERON:0005754,4.18e-12,9;UBERON:0007297,4.18e-12,9;UBERON:0001155,6.51e-12,9;UBERON:0003101,6.70e-11,22;UBERON:0000079,6.70e-11,22;UBERON:0004876,4.42e-10,11;UBERON:0000059,6.34e-10,11;UBERON:0002113,2.31e-09,26;UBERON:0003918,2.31e-09,26;UBERON:0011143,2.31e-09,26;UBERON:0005095,2.31e-09,26;UBERON:0007687,2.31e-09,26;UBERON:0003887,2.55e-09,12;UBERON:0003133,1.02e-08,48;UBERON:0000489,5.94e-08,31;UBERON:0005156,3.68e-07,59;UBERON:0000990,3.68e-07,59 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.589405839739707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211103257785751,0,0,0,0,0,0,0,0,0.447749509444357,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.865554558968364,2.98578579323551,0,1.22206028986725,0,0,0,0,0,0,0,0,0,3.15667522279512,0,0,0,0,0.311064574191741,0,0,0,0,0,0,0,0,0,6.63961339319714,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0.394028536495991,8.07800657278971,0,0,0,0,0,0,0,0,1.63293680054705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.323474434190045,0,0,0.169732529954025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0,0,0,0,0,0,0.175871244359621,0,0,0,0,0,0,0,0,0,0,0,0,0.235479278551542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.35080575286394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0,0,0,0,0,0.682008283964155,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.733448665097199,2.03448089157869,0,0,0 | |||
|short_description=p@chr2:177011059..177011079,+ | |||
}} |
Revision as of 14:50, 12 September 2013
Short description: | p@chr2:177011059..177011079, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:177011059..177011079, + |
Coexpression cluster: | C1555_epididymis_kidney_seminal_ductus_uterus_colon_Cardiac |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
male genital duct | 1.01e-74 | 3 |
internal male genitalia | 1.01e-74 | 3 |
duct of male reproductive system | 2.60e-56 | 4 |
epididymis | 2.78e-26 | 1 |
seminal vesicle | 3.58e-26 | 1 |
seminal fluid secreting gland | 3.58e-26 | 1 |
vas deferens | 4.61e-26 | 1 |
spermatic cord | 4.61e-26 | 1 |
male reproductive organ | 4.65e-21 | 11 |
internal genitalia | 2.48e-16 | 25 |
duct | 1.64e-12 | 19 |
mesonephros | 4.18e-12 | 9 |
pronephros | 4.18e-12 | 9 |
nephrogenic cord | 4.18e-12 | 9 |
pronephric mesoderm | 4.18e-12 | 9 |
rostral part of nephrogenic cord | 4.18e-12 | 9 |
presumptive pronephric mesoderm | 4.18e-12 | 9 |
colon | 6.51e-12 | 9 |
male organism | 6.70e-11 | 22 |
male reproductive system | 6.70e-11 | 22 |
urogenital ridge | 4.42e-10 | 11 |
large intestine | 6.34e-10 | 11 |
kidney | 2.31e-09 | 26 |
kidney mesenchyme | 2.31e-09 | 26 |
upper urinary tract | 2.31e-09 | 26 |
kidney rudiment | 2.31e-09 | 26 |
kidney field | 2.31e-09 | 26 |
intraembryonic coelom | 2.55e-09 | 12 |
reproductive organ | 1.02e-08 | 48 |
cavitated compound organ | 5.94e-08 | 31 |
reproductive structure | 3.68e-07 | 59 |
reproductive system | 3.68e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 1.67e-09 | 3 |
leiomyoma | 1.67e-09 | 3 |
benign neoplasm | 1.92e-07 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.