FFCP PHASE1:Hg19::chr2:204732487..204732521,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1493|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2505|TSSclassifier=S|UniProt=P16410,O95653|association_with_transcript=0bp_to_ENST00000302823,NM_001037631,NM_005214,uc002vak.1,uc002val.1,uc010fty.1,uc010ftz.1_5end|coexpression_cluster_id=C103|description=CAGE_peak_1_at_CTLA4_5end|id=chr2:204732487..204732521,+|ontology_enrichment_celltype=CL:0000791!3.15e-24!18;CL:0000789!3.15e-24!18;CL:0002420!3.15e-24!18;CL:0002419!3.15e-24!18;CL:0000790!3.15e-24!18;CL:0000084!5.47e-22!25;CL:0000827!5.47e-22!25;CL:0000738!1.86e-21!140;CL:0002087!8.31e-16!119;CL:0000625!2.99e-15!11;CL:0000988!3.06e-14!182;CL:0000037!6.21e-14!172;CL:0000566!6.21e-14!172;CL:0002031!3.11e-13!124;CL:0000838!5.74e-12!52;CL:0002032!1.16e-11!165;CL:0000837!1.16e-11!165;CL:0000542!1.38e-11!53;CL:0000051!1.38e-11!53;CL:0000624!6.07e-10!6;CL:0000080!2.33e-08!6;CL:0000990!1.03e-07!8;CL:0000451!1.22e-07!10|ontology_enrichment_celltype_v019=CL:0000791;4.61e-34;18!CL:0000789;4.61e-34;18!CL:0002419;4.61e-34;18!CL:0000084;3.46e-32;25!CL:0000625;3.30e-23;11!CL:0000624;8.51e-15;6!CL:0000542;7.78e-10;53!CL:0000898;2.35e-08;3!CL:0000094;2.71e-08;8!CL:0000081;9.32e-08;11!CL:0000226;1.63e-07;3!CL:0000842;1.63e-07;3!CL:0000623;3.67e-07;3|ontology_enrichment_celltype_v019_2=CL:0000791,4.82e-34,18;CL:0000789,4.82e-34,18;CL:0002420,4.82e-34,18;CL:0002419,4.82e-34,18;CL:0000790,4.82e-34,18;CL:0000084,3.47e-32,25;CL:0000827,3.47e-32,25;CL:0000625,3.46e-23,11;CL:0000738,1.59e-20,136;CL:0000838,1.17e-18,52;CL:0000542,3.57e-18,53;CL:0000051,3.57e-18,53;CL:0002087,1.09e-15,115;CL:0000988,1.75e-15,177;CL:0000624,8.53e-15,6;CL:0000037,2.68e-14,168;CL:0002032,7.35e-12,161;CL:0000837,7.35e-12,161;CL:0002031,1.44e-11,120;CL:0000898,2.36e-08,3;CL:0000094,2.38e-08,8;CL:0000081,7.91e-08,11;CL:0000226,1.63e-07,3;CL:0000842,1.63e-07,3;CL:0000623,3.48e-07,3;CL:0000825,3.48e-07,3|ontology_enrichment_development_v019=CL:0000790;4.61e-34;18!CL:0000051;7.78e-10;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!8.50e-21!115;UBERON:0000178!8.18e-19!15;UBERON:0000179!8.18e-19!15;UBERON:0000463!8.18e-19!15;UBERON:0002390!1.71e-13!102;UBERON:0003061!1.71e-13!102;UBERON:0002193!7.00e-13!112|ontology_enrichment_uberon_v019=UBERON:0000178;8.35e-29;15!UBERON:0000179;8.35e-29;15!UBERON:0000463;8.35e-29;15!UBERON:0002390;1.46e-17;32!UBERON:0002193;4.88e-11;42|ontology_enrichment_uberon_v019_2=UBERON:0000178,7.78e-29,15;UBERON:0000179,7.78e-29,15;UBERON:0000463,7.78e-29,15;UBERON:0002193,5.17e-11,108;UBERON:0002390,7.98e-11,98;UBERON:0003061,7.98e-11,98;UBERON:0004177,2.00e-07,7;UBERON:0005057,2.00e-07,7|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.36018566109342,4.98978217526377,1.39334510984468,0,0,0,0,0,0,2.21598163412751,2.60707781711184,3.47217393145363,1.34349284543955,3.2389366601898,2.83333124397605,0.290796477559129,0,0.242584061187816,0,0,0.619412741790207,0.28769239232215,0.256160706529101,0.236482229888585,0.689491361473237,0,0,0,0,0.449446968890169,0.306083892370903,0,0.639337125799041,0,0,0,0,0,0,0,0,0.217188844705117,1.81619850790011,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.800791974072025,0,0,0,0,0,0,0,4.48406850385229,0,32.6538218388963,34.9779578846757,36.8026683209121,186.245755865215,156.11676571749,164.286388589952,183.137124703437,153.523609587769,363.543689823949,330.528570718763,354.75306153217,173.051372949387,206.404184577527,12.168404940672,12.4357508003632,16.2289728011629,21.0566919690126,19.5304804505491,10.4535523804977,29.6870477867623,60.9320584827055,73.1926458878002,49.3388399438031,18.4767940307976,9.76625180784628,12.3558765778289,17.3161386939439,20.7338310070158,29.983374372563,20.1260664237414,13.1380479507367,5.64498881029251,3.20928234940209,4.34473211648397,0,0,0,0,0,0,0,0,0,0,0,0.982343066232845,0,0,12.332800958878,8.35822739036483,9.30705723632056,0.238490624305342,1.14398982156026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0.0895585227028483,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448340575974109,4.92576900504818,10.3501235932568,6.93052395910641,0,1.30139853857622,0,0,0,0,2.99161459204025,1.24324654030811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.8872978808479,11.6485668442053,7.36420148843766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564862804660675,0,0,0,0,6.08937131078603,3.82318603571188,5.69647187174163,9.76750279376935,12.3408681925858,5.8362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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1493 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2505 | |||
|TSSclassifier=S | |||
|UniProt=P16410,O95653 | |||
|association_with_transcript=0bp_to_ENST00000302823,NM_001037631,NM_005214,uc002vak.1,uc002val.1,uc010fty.1,uc010ftz.1_5end | |||
|coexpression_cluster_id=C103 | |||
|description=CAGE_peak_1_at_CTLA4_5end | |||
|id=chr2:204732487..204732521,+ | |||
|ontology_enrichment_celltype=CL:0000791!3.15e-24!18;CL:0000789!3.15e-24!18;CL:0002420!3.15e-24!18;CL:0002419!3.15e-24!18;CL:0000790!3.15e-24!18;CL:0000084!5.47e-22!25;CL:0000827!5.47e-22!25;CL:0000738!1.86e-21!140;CL:0002087!8.31e-16!119;CL:0000625!2.99e-15!11;CL:0000988!3.06e-14!182;CL:0000037!6.21e-14!172;CL:0000566!6.21e-14!172;CL:0002031!3.11e-13!124;CL:0000838!5.74e-12!52;CL:0002032!1.16e-11!165;CL:0000837!1.16e-11!165;CL:0000542!1.38e-11!53;CL:0000051!1.38e-11!53;CL:0000624!6.07e-10!6;CL:0000080!2.33e-08!6;CL:0000990!1.03e-07!8;CL:0000451!1.22e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000791;4.61e-34;18!CL:0000789;4.61e-34;18!CL:0002419;4.61e-34;18!CL:0000084;3.46e-32;25!CL:0000625;3.30e-23;11!CL:0000624;8.51e-15;6!CL:0000542;7.78e-10;53!CL:0000898;2.35e-08;3!CL:0000094;2.71e-08;8!CL:0000081;9.32e-08;11!CL:0000226;1.63e-07;3!CL:0000842;1.63e-07;3!CL:0000623;3.67e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,4.82e-34,18;CL:0000789,4.82e-34,18;CL:0002420,4.82e-34,18;CL:0002419,4.82e-34,18;CL:0000790,4.82e-34,18;CL:0000084,3.47e-32,25;CL:0000827,3.47e-32,25;CL:0000625,3.46e-23,11;CL:0000738,1.59e-20,136;CL:0000838,1.17e-18,52;CL:0000542,3.57e-18,53;CL:0000051,3.57e-18,53;CL:0002087,1.09e-15,115;CL:0000988,1.75e-15,177;CL:0000624,8.53e-15,6;CL:0000037,2.68e-14,168;CL:0002032,7.35e-12,161;CL:0000837,7.35e-12,161;CL:0002031,1.44e-11,120;CL:0000898,2.36e-08,3;CL:0000094,2.38e-08,8;CL:0000081,7.91e-08,11;CL:0000226,1.63e-07,3;CL:0000842,1.63e-07,3;CL:0000623,3.48e-07,3;CL:0000825,3.48e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;4.61e-34;18!CL:0000051;7.78e-10;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.50e-21!115;UBERON:0000178!8.18e-19!15;UBERON:0000179!8.18e-19!15;UBERON:0000463!8.18e-19!15;UBERON:0002390!1.71e-13!102;UBERON:0003061!1.71e-13!102;UBERON:0002193!7.00e-13!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;8.35e-29;15!UBERON:0000179;8.35e-29;15!UBERON:0000463;8.35e-29;15!UBERON:0002390;1.46e-17;32!UBERON:0002193;4.88e-11;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,7.78e-29,15;UBERON:0000179,7.78e-29,15;UBERON:0000463,7.78e-29,15;UBERON:0002193,5.17e-11,108;UBERON:0002390,7.98e-11,98;UBERON:0003061,7.98e-11,98;UBERON:0004177,2.00e-07,7;UBERON:0005057,2.00e-07,7 | |||
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|short_description=p1@CTLA4 | |||
}} |
Revision as of 16:09, 12 September 2013
Short description: | p1@CTLA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_CTLA4_5end |
Coexpression cluster: | C103_CD4_CD8_Natural_Peripheral_Whole_Neutrophils_Basophils |
Association with transcript: | 0bp_to_ENST00000302823, NM_001037631, NM_005214, uc002vak.1, uc002val.1, uc010fty.1, uc010ftz.1_5end |
EntrezGene: | CTLA4 |
HGNC: | 2505 |
UniProt: | P16410O95653 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 4.82e-34 | 18 |
alpha-beta T cell | 4.82e-34 | 18 |
immature T cell | 4.82e-34 | 18 |
mature T cell | 4.82e-34 | 18 |
immature alpha-beta T cell | 4.82e-34 | 18 |
T cell | 3.47e-32 | 25 |
pro-T cell | 3.47e-32 | 25 |
CD8-positive, alpha-beta T cell | 3.46e-23 | 11 |
leukocyte | 1.59e-20 | 136 |
lymphoid lineage restricted progenitor cell | 1.17e-18 | 52 |
lymphocyte | 3.57e-18 | 53 |
common lymphoid progenitor | 3.57e-18 | 53 |
nongranular leukocyte | 1.09e-15 | 115 |
hematopoietic cell | 1.75e-15 | 177 |
CD4-positive, alpha-beta T cell | 8.53e-15 | 6 |
hematopoietic stem cell | 2.68e-14 | 168 |
hematopoietic oligopotent progenitor cell | 7.35e-12 | 161 |
hematopoietic multipotent progenitor cell | 7.35e-12 | 161 |
hematopoietic lineage restricted progenitor cell | 1.44e-11 | 120 |
naive T cell | 2.36e-08 | 3 |
granulocyte | 2.38e-08 | 8 |
blood cell | 7.91e-08 | 11 |
single nucleate cell | 1.63e-07 | 3 |
mononuclear cell | 1.63e-07 | 3 |
natural killer cell | 3.48e-07 | 3 |
pro-NK cell | 3.48e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 7.78e-29 | 15 |
haemolymphatic fluid | 7.78e-29 | 15 |
organism substance | 7.78e-29 | 15 |
hemolymphoid system | 5.17e-11 | 108 |
hematopoietic system | 7.98e-11 | 98 |
blood island | 7.98e-11 | 98 |
hemopoietic organ | 2.00e-07 | 7 |
immune organ | 2.00e-07 | 7 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.