FFCP PHASE1:Hg19::chr4:467892..467963,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=170960|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=31,29425|TSSclassifier=S|UniProt=D6RGC2,B4E159|association_with_transcript=0bp_to_ENST00000451020,ENST00000505900,ENST00000506646_5end|description=CAGE_peak_1_at_ABCA11P_5end,CAGE_peak_1_at_ZNF721_5end|id=chr4:467892..467963,-|ontology_enrichment_celltype=CL:0000542!1.90e-17!53;CL:0000051!1.90e-17!53;CL:0000838!3.19e-17!52;CL:0000791!1.37e-10!18;CL:0000789!1.37e-10!18;CL:0002420!1.37e-10!18;CL:0002419!1.37e-10!18;CL:0000790!1.37e-10!18;CL:0000084!5.26e-09!25;CL:0000827!5.26e-09!25;CL:0000945!1.48e-08!24;CL:0000826!1.48e-08!24;CL:0000236!9.47e-08!14;CL:0000625!2.20e-07!11|ontology_enrichment_celltype_v019=CL:0000791;1.52e-10;18!CL:0000789;1.52e-10;18!CL:0002419;1.52e-10;18!CL:0000542;1.94e-10;53!CL:0000084;4.81e-09;25!CL:0000945;1.49e-08;24!CL:0000236;7.27e-08;13!CL:0000625;2.29e-07;11|ontology_enrichment_celltype_v019_2=CL:0000542,1.90e-17,53;CL:0000051,1.90e-17,53;CL:0000838,3.19e-17,52;CL:0000791,1.37e-10,18;CL:0000789,1.37e-10,18;CL:0002420,1.37e-10,18;CL:0002419,1.37e-10,18;CL:0000790,1.37e-10,18;CL:0000084,5.26e-09,25;CL:0000827,5.26e-09,25;CL:0000945,1.48e-08,24;CL:0000826,1.48e-08,24;CL:0000236,9.47e-08,14;CL:0000625,2.20e-07,11|ontology_enrichment_development_v019=CL:0000790;1.52e-10;18!CL:0000051;1.94e-10;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!6.72e-16!115;UBERON:0000073!1.68e-11!94;UBERON:0001016!1.68e-11!94;UBERON:0001017!4.88e-11!82;UBERON:0005743!1.54e-10!86;UBERON:0001049!6.31e-10!57;UBERON:0005068!6.31e-10!57;UBERON:0006241!6.31e-10!57;UBERON:0007135!6.31e-10!57;UBERON:0002780!8.55e-09!41;UBERON:0001890!8.55e-09!41;UBERON:0006240!8.55e-09!41;UBERON:0003080!9.05e-09!42;UBERON:0000955!7.15e-08!69;UBERON:0006238!7.15e-08!69;UBERON:0002616!9.21e-08!59;UBERON:0002020!9.48e-07!34;UBERON:0003528!9.48e-07!34|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.18e-15,114;UBERON:0001016,5.55e-12,89;UBERON:0001017,5.02e-11,81;UBERON:0001049,6.20e-10,56;UBERON:0005068,6.20e-10,56;UBERON:0006241,6.20e-10,56;UBERON:0007135,6.20e-10,56;UBERON:0000073,5.30e-09,53;UBERON:0002616,5.30e-09,53;UBERON:0002780,8.55e-09,41;UBERON:0001890,8.55e-09,41;UBERON:0003080,8.55e-09,41;UBERON:0006240,8.55e-09,41;UBERON:0000955,7.47e-08,68;UBERON:0006238,7.47e-08,68;UBERON:0003528,9.48e-07,34;UBERON:0002020,9.48e-07,34|phase1_expression=11.6274162733156,11.9896293378951,15.7868932587488,11.0080628188443,18.7723659659461,6.97870819280295,12.6649939084155,8.84407822797563,15.4099520637905,10.3208253330634,18.1428303672831,11.1405099786388,9.75937819445278,30.8178218870516,21.8722267980424,14.7911532219391,10.8485015044316,13.8758917173601,11.2224543721817,15.2670112015217,9.58803248847989,9.09018692286455,22.0401710090914,22.5842801370259,19.08248121841,39.3529039601949,36.6989634841257,37.308910342684,29.5023207636678,36.4637928192352,13.4690027284986,17.4690032650996,10.843413076017,20.7062245693401,35.1701090634569,36.6796619817548,42.5720637035528,15.5118714388926,16.2441002450815,18.8799457522791,10.7479427635164,22.9964502873475,23.9545277899793,18.029381608666,19.2716731281293,15.2827958548324,17.4321777679263,18.5025549609822,17.6532631410209,20.1384674625505,18.4435708700952,26.0130452877444,18.2715210790408,20.0100251910986,20.3139729891513,16.7535682192918,14.191119803008,23.3712423822888,11.9372718024652,19.2557416245656,12.1474053901818,19.4612267110163,17.7522655283252,15.344091019177,16.5419266018293,13.6172453925874,14.9477339758938,20.3511418857962,13.5585558789252,19.9813737128707,13.3187890579341,13.9945501675275,26.2663781575934,22.8155709216897,26.7881417955955,23.0624510059213,25.2739420079614,25.3798948902146,24.9124659380474,27.3612233991599,22.2786678462981,23.0156833743439,65.1186104506894,64.4443561289315,70.2712310552208,75.5312493942718,64.864149899834,62.0732635150842,50.9004552044344,58.1972790266572,62.0442136329299,51.6768726646426,61.5459897281618,42.2948251452883,70.063570372692,33.4497787664348,64.3240948272234,46.7682807671506,44.409923783894,43.9700482877483,98.4285245233443,118.835399239418,68.189354942769,36.2083984876814,58.0373637725429,59.3710837484105,63.0973002572486,34.2003823667553,26.1419288595355,29.7632607332654,39.2417025255905,40.2826289171723,93.1239616657739,98.7225655651041,98.2633923766782,42.9442408823776,69.3629093419477,79.7215673519702,86.7857543626895,75.1814377804868,67.7126792010675,60.8289308446959,69.1139796566977,79.8636453603571,64.9639778072198,63.6930807998405,63.2268557629206,48.7888318603853,34.2323450602889,45.1852140114333,14.6284119788377,16.0968206328873,19.051521714686,17.7105184668437,8.02140657017423,12.4568006306308,11.1340032587154,11.1926020169606,26.7533532574312,18.8469987843179,19.3236528524877,21.1531206928806,13.1146303785315,20.763928795928,32.1301919718137,28.034887705182,13.029880130848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690486156561,31.924986196747,40.0799372164691,31.2307855115406,45.0658830615568,40.5269949126937,28.4908908166354,11.1301522728697,74.3666255361819,52.0370986385555,19.3971769029876,24.499638188256,29.8665896698537,36.8411098446521,38.9506616099449,31.5879200930763,36.0462525597057,20.954647496658,37.7853010778532,39.9754376725632,21.0036117592195,38.6940692580588,28.2480041723386,35.5819051743042,16.3994301050882,18.6397180036227,19.8916222116275,33.619016772118,23.1960829009048,25.008448359459,33.0002435046592,14.9032444934188,49.9753571413613,28.4333231243441,32.8052801417816,43.4042272652487,25.0492450265932,38.2882366312754,20.2855373737157,39.2006830927542,53.8166007740439,22.9972369751271,23.0351789427663,48.7611397217295,54.6269043812968,82.8690376518723,23.328723352774,28.5780289138333,20.2355851136154,40.0341727233539,23.08624352056,26.8300018806608,25.5832224351759,35.0864125041798,45.0921743058925,32.2312987810857,31.9605552178323,31.5254283179187,74.0515116224928,30.3775312750789,40.9255254387762,44.8691901920963,29.7297645637411,15.2325159298748,20.3071840879776,18.7790324803345,11.0601545890255,29.6856877585992,24.494724151227,26.8422224991347,30.4838676137469,18.09944261498,14.8899065118874,16.2441619626164,18.0087245194446,40.2415957822496,32.3082501203014,25.8971534875158,19.1979448821182,11.598144313382,38.371168451672,13.8024283442642,49.1408414648579,29.6111026036146,65.3957815005578,22.8676274830493,46.9494443492355,27.859871076968,34.5324105596252,27.2784031889683,30.1532435757304,25.6887436340772,40.2432357585638,53.1713056585484,35.5030811170056,11.3851166840837,31.1086768513315,23.0114660065671,7.79541016214446,53.0305197658803,31.7605384544123,21.1034794392513,32.1348010828468,33.4872376885315,45.4386478590101,0,20.9413789788017,35.3444059175706,38.6189593576242,15.9957857811703,20.7979032884138,11.6809171773423,39.99475667272,24.3662225479041,41.4304098307399,42.2233755131804,61.99443802161,52.5638825339313,70.198111001865,30.8419301748234,22.7769510632752,41.458471972939,46.7517141295766,30.4924594118403,36.8999868768798,34.1675333032472,37.3689780061065,20.295867127091,33.6056995708711,28.4985236431089,26.7791599913262,24.6407976781402,28.6919745842143,31.916381399741,34.9293374373314,20.5950269585766,16.4360112651682,19.307228228694,21.0190972929413,35.1961413605181,35.5722602572141,24.0068745206286,31.2905683867191,27.5745097219706,25.3249108919554|short_description=p1@ABCA11P,p1@ZNF721}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=170960 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=31,29425 | |||
|TSSclassifier=S | |||
|UniProt=D6RGC2,B4E159 | |||
|association_with_transcript=0bp_to_ENST00000451020,ENST00000505900,ENST00000506646_5end | |||
|description=CAGE_peak_1_at_ABCA11P_5end,CAGE_peak_1_at_ZNF721_5end | |||
|id=chr4:467892..467963,- | |||
|ontology_enrichment_celltype=CL:0000542!1.90e-17!53;CL:0000051!1.90e-17!53;CL:0000838!3.19e-17!52;CL:0000791!1.37e-10!18;CL:0000789!1.37e-10!18;CL:0002420!1.37e-10!18;CL:0002419!1.37e-10!18;CL:0000790!1.37e-10!18;CL:0000084!5.26e-09!25;CL:0000827!5.26e-09!25;CL:0000945!1.48e-08!24;CL:0000826!1.48e-08!24;CL:0000236!9.47e-08!14;CL:0000625!2.20e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.52e-10;18!CL:0000789;1.52e-10;18!CL:0002419;1.52e-10;18!CL:0000542;1.94e-10;53!CL:0000084;4.81e-09;25!CL:0000945;1.49e-08;24!CL:0000236;7.27e-08;13!CL:0000625;2.29e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.90e-17,53;CL:0000051,1.90e-17,53;CL:0000838,3.19e-17,52;CL:0000791,1.37e-10,18;CL:0000789,1.37e-10,18;CL:0002420,1.37e-10,18;CL:0002419,1.37e-10,18;CL:0000790,1.37e-10,18;CL:0000084,5.26e-09,25;CL:0000827,5.26e-09,25;CL:0000945,1.48e-08,24;CL:0000826,1.48e-08,24;CL:0000236,9.47e-08,14;CL:0000625,2.20e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000790;1.52e-10;18!CL:0000051;1.94e-10;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.72e-16!115;UBERON:0000073!1.68e-11!94;UBERON:0001016!1.68e-11!94;UBERON:0001017!4.88e-11!82;UBERON:0005743!1.54e-10!86;UBERON:0001049!6.31e-10!57;UBERON:0005068!6.31e-10!57;UBERON:0006241!6.31e-10!57;UBERON:0007135!6.31e-10!57;UBERON:0002780!8.55e-09!41;UBERON:0001890!8.55e-09!41;UBERON:0006240!8.55e-09!41;UBERON:0003080!9.05e-09!42;UBERON:0000955!7.15e-08!69;UBERON:0006238!7.15e-08!69;UBERON:0002616!9.21e-08!59;UBERON:0002020!9.48e-07!34;UBERON:0003528!9.48e-07!34 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.18e-15,114;UBERON:0001016,5.55e-12,89;UBERON:0001017,5.02e-11,81;UBERON:0001049,6.20e-10,56;UBERON:0005068,6.20e-10,56;UBERON:0006241,6.20e-10,56;UBERON:0007135,6.20e-10,56;UBERON:0000073,5.30e-09,53;UBERON:0002616,5.30e-09,53;UBERON:0002780,8.55e-09,41;UBERON:0001890,8.55e-09,41;UBERON:0003080,8.55e-09,41;UBERON:0006240,8.55e-09,41;UBERON:0000955,7.47e-08,68;UBERON:0006238,7.47e-08,68;UBERON:0003528,9.48e-07,34;UBERON:0002020,9.48e-07,34 | |||
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| |||
|short_description=p1@ABCA11P,p1@ZNF721 | |||
}} |
Revision as of 11:01, 13 September 2013
Short description: | p1@ABCA11P, p1@ZNF721 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ABCA11P_5end, CAGE_peak_1_at_ZNF721_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000451020, ENST00000505900, ENST00000506646_5end |
EntrezGene: | ZNF721 |
HGNC: | 29425&submit=Submit 31, 29425 |
UniProt: | D6RGC2B4E159 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.90e-17 | 53 |
common lymphoid progenitor | 1.90e-17 | 53 |
lymphoid lineage restricted progenitor cell | 3.19e-17 | 52 |
mature alpha-beta T cell | 1.37e-10 | 18 |
alpha-beta T cell | 1.37e-10 | 18 |
immature T cell | 1.37e-10 | 18 |
mature T cell | 1.37e-10 | 18 |
immature alpha-beta T cell | 1.37e-10 | 18 |
T cell | 5.26e-09 | 25 |
pro-T cell | 5.26e-09 | 25 |
lymphocyte of B lineage | 1.48e-08 | 24 |
pro-B cell | 1.48e-08 | 24 |
B cell | 9.47e-08 | 14 |
CD8-positive, alpha-beta T cell | 2.20e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.18e-15 | 114 |
nervous system | 5.55e-12 | 89 |
central nervous system | 5.02e-11 | 81 |
neural tube | 6.20e-10 | 56 |
neural rod | 6.20e-10 | 56 |
future spinal cord | 6.20e-10 | 56 |
neural keel | 6.20e-10 | 56 |
regional part of nervous system | 5.30e-09 | 53 |
regional part of brain | 5.30e-09 | 53 |
regional part of forebrain | 8.55e-09 | 41 |
forebrain | 8.55e-09 | 41 |
anterior neural tube | 8.55e-09 | 41 |
future forebrain | 8.55e-09 | 41 |
brain | 7.47e-08 | 68 |
future brain | 7.47e-08 | 68 |
brain grey matter | 9.48e-07 | 34 |
gray matter | 9.48e-07 | 34 |
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