FFCP PHASE1:Hg19::chr4:169552655..169552669,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=23022|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=17068|TSSclassifier=S|UniProt=D6RBH5|association_with_transcript=-96bp_to_ENST00000504519_5end|coexpression_cluster_id=C947|description=CAGE_peak_7_at_PALLD_5end|id=chr4:169552655..169552669,+|ontology_enrichment_celltype=CL:0000055!1.95e-20!180;CL:0000680!6.64e-09!57;CL:0000056!6.64e-09!57;CL:0000355!6.64e-09!57;CL:0000183!1.01e-07!59;CL:0000062!1.21e-07!11;CL:0000375!1.21e-07!11;CL:0000335!1.21e-07!11;CL:0000035!1.76e-07!20;CL:0000057!3.10e-07!75;CL:0000128!3.19e-07!7;CL:0000126!3.19e-07!7;CL:0000127!3.19e-07!7;CL:0002453!3.19e-07!7;CL:0000187!3.37e-07!54;CL:0000548!3.41e-07!679;CL:0000004!3.41e-07!679;CL:0000255!3.41e-07!679;CL:0000012!6.89e-07!682;CL:0002371!9.98e-07!591|ontology_enrichment_celltype_v019=CL:0000128;1.27e-12;7!CL:0000126;1.27e-12;7!CL:0000127;1.27e-12;7!CL:0000062;1.94e-12;9!CL:0000056;2.96e-08;4!CL:0000515;3.45e-07;3!CL:0002603;4.23e-07;3!CL:0000064;4.32e-07;3!CL:0000067;4.32e-07;3!CL:0005012;4.32e-07;3!CL:0002304;4.32e-07;3!CL:0000243;4.56e-07;15!CL:0000125;4.56e-07;15!CL:0002166;7.95e-07;3|ontology_enrichment_celltype_v019_2=CL:0000128,1.37e-12,7;CL:0000126,1.37e-12,7;CL:0000127,1.37e-12,7;CL:0002453,1.37e-12,7;CL:0000062,2.09e-12,11;CL:0000375,2.09e-12,11;CL:0000335,2.09e-12,11;CL:0000515,2.86e-08,4;CL:0000221,1.43e-07,72;CL:0002603,4.21e-07,3;CL:0000064,4.37e-07,3;CL:0000067,4.37e-07,3;CL:0005012,4.37e-07,3;CL:0002304,4.37e-07,3;CL:0000243,4.99e-07,15;CL:0000125,4.99e-07,15;CL:0000030,4.99e-07,15;CL:0000339,4.99e-07,15;CL:0002166,7.75e-07,3|ontology_enrichment_development_v019=CL:0000335;2.07e-12;11!CL:0000515;2.96e-08;4!CL:0000339;4.56e-07;15|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000486!8.84e-10!82;UBERON:0000914!1.61e-09!83;UBERON:0002329!1.61e-09!83;UBERON:0003077!1.61e-09!83;UBERON:0003059!1.61e-09!83;UBERON:0007282!1.61e-09!83;UBERON:0009618!1.61e-09!83;UBERON:0007285!1.61e-09!83;UBERON:0001134!4.00e-08!61;UBERON:0002036!4.00e-08!61;UBERON:0003082!4.00e-08!61;UBERON:0002200!4.27e-08!11;UBERON:0006876!4.27e-08!11;UBERON:0002385!1.62e-07!63;UBERON:0001015!1.62e-07!63;UBERON:0000383!1.62e-07!63;UBERON:0001737!3.32e-07!9;UBERON:0004290!4.06e-07!70|ontology_enrichment_uberon_v019=UBERON:0006876;9.33e-11;11!UBERON:0001737;4.97e-10;9!UBERON:0001557;4.97e-10;9!UBERON:0000488;1.61e-08;4!UBERON:0001708;3.86e-08;4!UBERON:0008895;3.86e-08;4!UBERON:0010371;6.28e-08;31!UBERON:0007625;1.95e-07;11!UBERON:0001778;4.32e-07;3!UBERON:0001775;4.32e-07;3!UBERON:0005284;7.04e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0006876,1.04e-10,11;UBERON:0001737,3.00e-10,9;UBERON:0000488,1.71e-08,4;UBERON:0001708,3.32e-08,4;UBERON:0008895,3.32e-08,4;UBERON:0007625,1.60e-07,11;UBERON:0001778,4.37e-07,3;UBERON:0001775,4.37e-07,3;UBERON:0005284,7.60e-07,5|phase1_expression=6.35874327446948,7.06531728840244,1.26858963686374,2.00146596706261,0.446961094427288,0,0,0,0,5.89761447603621,0.697801167972428,0.655324116390517,1.31883489114227,0,0.331397375727916,0.672325146451775,1.80808358407193,2.19093027116212,0.975865597581014,18.9606429438253,23.8680808755776,25.7032871612032,2.86235987131057,3.01123735160345,10.168953807179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,0,1.59331170856906,1.5905718941022,0,20.2304508731105,17.29489300208,35.1339142772504,0.196468613246569,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98183171017191,7.47120018821021,6.09082231740807,0.573673241497627,0.354668382198357,2.24271040056923,4.2699598291882,6.90669135568048,0,0.134710672069688,0.326923806226917,24.217188423189,4.03323147135999,0,0,0,0,0,0,0,0,0,0,2.37600571456411,3.70900393917835,0,0,0,0,0.277064115484183,3.07284334616587,4.90380473278431,0.45071417671979,0,1.4351170855109,0,0.211931901159562,0.900273288253207,0.103052529238439,1.03056216018252,0.558350568994769,0.337552664482532,0.876933046450788,4.03894038790583,0.552299391853796,0.161646056818812,1.06502877754984,0.705264687593482,0.847802961552438,1.35282597214308,9.81886034127005,0.573609190778008,0,0,0,0.10366105501537,0,0,12.5159625863853,10.935095949279,0,0.928735856063958,0.721879481669586,1.77460200059766,1.34867752062481,1.92808823906786,2.20587945464788,2.39667388501647,2.60997681022206,2.83145747136345,1.37355025587742,0.769494313892781,0,1.40241773803446,0,0,0,0,0,0,0,3.08822058537346,1.97550513735526,0,0,0,0,0,1.44331342025273,0.695582429850461,15.8501737218359,0,0,0,0,0,0.246217006087397,0,0,8.43604505880993,17.3021592044825,11.9091081683605,0.179117045405697,0.581267877027924,0,0,0,0.207328115540772,0.288239906833923,0.12624243342638,0,0,0,0,0,0,0,13.9042544588247,2.1798003441664,10.1940217291121,0.387815147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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=23022 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17068 | |||
|TSSclassifier=S | |||
|UniProt=D6RBH5 | |||
|association_with_transcript=-96bp_to_ENST00000504519_5end | |||
|coexpression_cluster_id=C947 | |||
|description=CAGE_peak_7_at_PALLD_5end | |||
|id=chr4:169552655..169552669,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.95e-20!180;CL:0000680!6.64e-09!57;CL:0000056!6.64e-09!57;CL:0000355!6.64e-09!57;CL:0000183!1.01e-07!59;CL:0000062!1.21e-07!11;CL:0000375!1.21e-07!11;CL:0000335!1.21e-07!11;CL:0000035!1.76e-07!20;CL:0000057!3.10e-07!75;CL:0000128!3.19e-07!7;CL:0000126!3.19e-07!7;CL:0000127!3.19e-07!7;CL:0002453!3.19e-07!7;CL:0000187!3.37e-07!54;CL:0000548!3.41e-07!679;CL:0000004!3.41e-07!679;CL:0000255!3.41e-07!679;CL:0000012!6.89e-07!682;CL:0002371!9.98e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0000128;1.27e-12;7!CL:0000126;1.27e-12;7!CL:0000127;1.27e-12;7!CL:0000062;1.94e-12;9!CL:0000056;2.96e-08;4!CL:0000515;3.45e-07;3!CL:0002603;4.23e-07;3!CL:0000064;4.32e-07;3!CL:0000067;4.32e-07;3!CL:0005012;4.32e-07;3!CL:0002304;4.32e-07;3!CL:0000243;4.56e-07;15!CL:0000125;4.56e-07;15!CL:0002166;7.95e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000128,1.37e-12,7;CL:0000126,1.37e-12,7;CL:0000127,1.37e-12,7;CL:0002453,1.37e-12,7;CL:0000062,2.09e-12,11;CL:0000375,2.09e-12,11;CL:0000335,2.09e-12,11;CL:0000515,2.86e-08,4;CL:0000221,1.43e-07,72;CL:0002603,4.21e-07,3;CL:0000064,4.37e-07,3;CL:0000067,4.37e-07,3;CL:0005012,4.37e-07,3;CL:0002304,4.37e-07,3;CL:0000243,4.99e-07,15;CL:0000125,4.99e-07,15;CL:0000030,4.99e-07,15;CL:0000339,4.99e-07,15;CL:0002166,7.75e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000335;2.07e-12;11!CL:0000515;2.96e-08;4!CL:0000339;4.56e-07;15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!8.84e-10!82;UBERON:0000914!1.61e-09!83;UBERON:0002329!1.61e-09!83;UBERON:0003077!1.61e-09!83;UBERON:0003059!1.61e-09!83;UBERON:0007282!1.61e-09!83;UBERON:0009618!1.61e-09!83;UBERON:0007285!1.61e-09!83;UBERON:0001134!4.00e-08!61;UBERON:0002036!4.00e-08!61;UBERON:0003082!4.00e-08!61;UBERON:0002200!4.27e-08!11;UBERON:0006876!4.27e-08!11;UBERON:0002385!1.62e-07!63;UBERON:0001015!1.62e-07!63;UBERON:0000383!1.62e-07!63;UBERON:0001737!3.32e-07!9;UBERON:0004290!4.06e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0006876;9.33e-11;11!UBERON:0001737;4.97e-10;9!UBERON:0001557;4.97e-10;9!UBERON:0000488;1.61e-08;4!UBERON:0001708;3.86e-08;4!UBERON:0008895;3.86e-08;4!UBERON:0010371;6.28e-08;31!UBERON:0007625;1.95e-07;11!UBERON:0001778;4.32e-07;3!UBERON:0001775;4.32e-07;3!UBERON:0005284;7.04e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006876,1.04e-10,11;UBERON:0001737,3.00e-10,9;UBERON:0000488,1.71e-08,4;UBERON:0001708,3.32e-08,4;UBERON:0008895,3.32e-08,4;UBERON:0007625,1.60e-07,11;UBERON:0001778,4.37e-07,3;UBERON:0001775,4.37e-07,3;UBERON:0005284,7.60e-07,5 | |||
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| |||
|short_description=p7@PALLD | |||
}} |
Revision as of 03:18, 13 September 2013
Short description: | p7@PALLD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_PALLD_5end |
Coexpression cluster: | C947_bone_Myoblast_mesenchymal_uterus_Preadipocyte_Ciliary_Astrocyte |
Association with transcript: | -96bp_to_ENST00000504519_5end |
EntrezGene: | PALLD |
HGNC: | 17068 |
UniProt: | D6RBH5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte | 1.37e-12 | 7 |
macroglial cell | 1.37e-12 | 7 |
astrocyte | 1.37e-12 | 7 |
oligodendrocyte precursor cell | 1.37e-12 | 7 |
osteoblast | 2.09e-12 | 11 |
osteoprogenitor cell | 2.09e-12 | 11 |
mesenchyme condensation cell | 2.09e-12 | 11 |
skeletal muscle myoblast | 2.86e-08 | 4 |
ectodermal cell | 1.43e-07 | 72 |
astrocyte of the cerebellum | 4.21e-07 | 3 |
ciliated cell | 4.37e-07 | 3 |
ciliated epithelial cell | 4.37e-07 | 3 |
multi-ciliated epithelial cell | 4.37e-07 | 3 |
non-pigmented ciliary epithelial cell | 4.37e-07 | 3 |
glial cell (sensu Vertebrata) | 4.99e-07 | 15 |
glial cell | 4.99e-07 | 15 |
glioblast | 4.99e-07 | 15 |
glioblast (sensu Vertebrata) | 4.99e-07 | 15 |
epithelial cell of Malassez | 7.75e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
vasculature of organ | 1.04e-10 | 11 |
larynx | 3.00e-10 | 9 |
atypical epithelium | 1.71e-08 | 4 |
jaw skeleton | 3.32e-08 | 4 |
splanchnocranium | 3.32e-08 | 4 |
pigment epithelium of eye | 1.60e-07 | 11 |
ciliary epithelium | 4.37e-07 | 3 |
ciliary body | 4.37e-07 | 3 |
brain vasculature | 7.60e-07 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.