FFCP PHASE1:Hg19::chr5:39203138..39203175,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2533|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4036|TSSclassifier=S|UniProt=|association_with_transcript=-9bp_to_ENST00000515010,uc003jls.2_5end|coexpression_cluster_id=C18|description=CAGE_peak_4_at_FYB_5end|id=chr5:39203138..39203175,-|ontology_enrichment_celltype=CL:0000037!3.35e-55!172;CL:0000566!3.35e-55!172;CL:0002032!2.23e-49!165;CL:0000837!2.23e-49!165;CL:0000988!2.34e-49!182;CL:0000738!7.00e-40!140;CL:0000763!9.16e-37!112;CL:0000049!9.16e-37!112;CL:0002031!2.03e-29!124;CL:0002087!1.90e-28!119;CL:0000766!3.19e-22!76;CL:0000839!7.68e-18!70;CL:0000084!1.32e-17!25;CL:0000827!1.32e-17!25;CL:0000557!1.74e-17!71;CL:0000791!3.61e-17!18;CL:0000789!3.61e-17!18;CL:0002420!3.61e-17!18;CL:0002419!3.61e-17!18;CL:0000790!3.61e-17!18;CL:0002194!2.41e-15!63;CL:0000576!2.41e-15!63;CL:0000040!2.41e-15!63;CL:0000559!2.41e-15!63;CL:0002009!2.92e-15!65;CL:0002057!1.69e-13!42;CL:0000860!8.18e-12!45;CL:0000838!1.49e-11!52;CL:0000625!4.07e-11!11;CL:0000542!4.21e-11!53;CL:0000051!4.21e-11!53;CL:0000134!1.73e-07!358;CL:0000094!2.27e-07!8;CL:0000624!3.67e-07!6;CL:0000451!8.90e-07!10;CL:0002320!9.69e-07!365|ontology_enrichment_celltype_v019=CL:0000791;6.15e-25;18!CL:0000789;6.15e-25;18!CL:0002419;6.15e-25;18!CL:0000084;1.02e-24;25!CL:0000625;7.35e-16;11!CL:0000094;3.11e-10;8!CL:0000624;5.96e-10;6!CL:0000451;1.29e-09;10!CL:0000990;1.65e-07;8!CL:0000988;5.03e-07;177!CL:0000081;6.07e-07;11!CL:0000542;9.50e-07;53|ontology_enrichment_celltype_v019_2=CL:0000037,5.44e-38,168;CL:0000988,1.13e-34,177;CL:0002032,1.23e-31,161;CL:0000837,1.23e-31,161;CL:0000738,6.51e-28,136;CL:0000791,6.48e-25,18;CL:0000789,6.48e-25,18;CL:0002420,6.48e-25,18;CL:0002419,6.48e-25,18;CL:0000790,6.48e-25,18;CL:0000084,9.90e-25,25;CL:0000827,9.90e-25,25;CL:0000763,4.61e-19,108;CL:0000049,4.61e-19,108;CL:0002087,3.60e-17,115;CL:0000625,7.56e-16,11;CL:0002031,3.86e-15,120;CL:0000838,3.43e-12,52;CL:0000542,8.32e-12,53;CL:0000051,8.32e-12,53;CL:0000094,2.97e-10,8;CL:0000624,6.07e-10,6;CL:0000451,1.18e-09,10;CL:0000766,1.39e-09,72;CL:0000990,1.50e-07,8;CL:0000081,5.87e-07,11|ontology_enrichment_development_v019=CL:0000790;6.15e-25;18!CL:0000051;9.50e-07;53|ontology_enrichment_disease=DOID:1240!2.23e-14!39;DOID:8692!1.12e-13!31;DOID:2531!1.86e-11!51;DOID:0060083!1.86e-11!51|ontology_enrichment_disease_v019=DOID:8692;4.44e-11;31!DOID:1240;3.88e-10;39!DOID:2531;8.17e-08;51!DOID:0060083;8.17e-08;51|ontology_enrichment_disease_v019_2=DOID:1240,1.35e-12,39;DOID:8692,2.51e-11,31;DOID:2531,4.83e-10,51;DOID:0060083,4.83e-10,51|ontology_enrichment_uberon=UBERON:0002390!1.29e-24!102;UBERON:0003061!1.29e-24!102;UBERON:0002193!3.82e-22!112;UBERON:0007023!5.85e-19!115;UBERON:0002371!2.13e-14!80;UBERON:0002405!9.78e-13!115;UBERON:0001474!1.09e-12!86;UBERON:0004765!1.17e-09!101;UBERON:0001434!1.17e-09!101;UBERON:0000178!5.62e-08!15;UBERON:0000179!5.62e-08!15;UBERON:0000463!5.62e-08!15|ontology_enrichment_uberon_v019=UBERON:0000178;5.57e-12;15!UBERON:0000179;5.57e-12;15!UBERON:0000463;5.57e-12;15!UBERON:0002390;3.00e-09;32|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.16e-14,98;UBERON:0003061,1.16e-14,98;UBERON:0002193,7.05e-14,108;UBERON:0000178,5.65e-12,15;UBERON:0000179,5.65e-12,15;UBERON:0000463,5.65e-12,15;UBERON:0002405,2.28e-07,93;UBERON:0004177,2.84e-07,7;UBERON:0005057,2.84e-07,7|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,7.86728553697808,16.8884935162774,6.50227717927519,0,0,0,0,0,3.52320527201817,3.87796785972314,14.0381113229099,12.1526087600877,1.34349284543955,8.42123531649347,2.31818010870768,0.436194716338694,2.26725566213286,2.18325655069035,0.697287110717054,0.822335776043652,1.23882548358041,0.28769239232215,0.768482119587302,0.47296445977717,0,0,0,0.564727018627814,1.91034305040492,1.12361742222542,0.306083892370903,1.60464513538047,0.639337125799041,0.329851300186716,0.598390972864896,0.852449501065388,0.580418477257168,0.56738522469114,1.24564449799115,0.251248665256743,0.521482918420201,0.217188844705117,3.63239701580021,2.57794345191295,0.632924774881769,0.845021145247767,0.212604299965044,0.209658645508376,0.44931452458598,0.150176892841506,0.48217676009124,0.285012743741249,0.79566670879636,0.730656615058536,0,0,0.889509253863555,0,0.400395987036012,0,0,0,0,1.17447437874188,0.764546456250458,1.32171328579026,3.36305137788922,3.16060901730092,125.304123562512,79.7811848380804,85.3246220847963,49.8215756264221,56.3845521276111,42.1368547103913,46.7584148178987,42.8930259007918,41.8340388614269,49.6235923867311,73.9294548078493,45.4724185026147,45.7808903410771,53.7711948054021,35.0964522588027,61.1484510900961,96.5345526185013,89.0910957538745,79.4469980917824,49.1762547307437,53.2676486106671,63.2274499688039,116.642078020991,45.2362888340217,29.9498388773953,31.3649174667963,52.7012916772205,58.2339080752604,41.2271397622741,70.559621109117,40.2352718491313,54.6354274139025,37.976507801258,63.2882644967832,0,0,0,0,0,0,0,0,0,0,0.2635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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2533 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4036 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-9bp_to_ENST00000515010,uc003jls.2_5end | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_4_at_FYB_5end | |||
|id=chr5:39203138..39203175,- | |||
|ontology_enrichment_celltype=CL:0000037!3.35e-55!172;CL:0000566!3.35e-55!172;CL:0002032!2.23e-49!165;CL:0000837!2.23e-49!165;CL:0000988!2.34e-49!182;CL:0000738!7.00e-40!140;CL:0000763!9.16e-37!112;CL:0000049!9.16e-37!112;CL:0002031!2.03e-29!124;CL:0002087!1.90e-28!119;CL:0000766!3.19e-22!76;CL:0000839!7.68e-18!70;CL:0000084!1.32e-17!25;CL:0000827!1.32e-17!25;CL:0000557!1.74e-17!71;CL:0000791!3.61e-17!18;CL:0000789!3.61e-17!18;CL:0002420!3.61e-17!18;CL:0002419!3.61e-17!18;CL:0000790!3.61e-17!18;CL:0002194!2.41e-15!63;CL:0000576!2.41e-15!63;CL:0000040!2.41e-15!63;CL:0000559!2.41e-15!63;CL:0002009!2.92e-15!65;CL:0002057!1.69e-13!42;CL:0000860!8.18e-12!45;CL:0000838!1.49e-11!52;CL:0000625!4.07e-11!11;CL:0000542!4.21e-11!53;CL:0000051!4.21e-11!53;CL:0000134!1.73e-07!358;CL:0000094!2.27e-07!8;CL:0000624!3.67e-07!6;CL:0000451!8.90e-07!10;CL:0002320!9.69e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000791;6.15e-25;18!CL:0000789;6.15e-25;18!CL:0002419;6.15e-25;18!CL:0000084;1.02e-24;25!CL:0000625;7.35e-16;11!CL:0000094;3.11e-10;8!CL:0000624;5.96e-10;6!CL:0000451;1.29e-09;10!CL:0000990;1.65e-07;8!CL:0000988;5.03e-07;177!CL:0000081;6.07e-07;11!CL:0000542;9.50e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,5.44e-38,168;CL:0000988,1.13e-34,177;CL:0002032,1.23e-31,161;CL:0000837,1.23e-31,161;CL:0000738,6.51e-28,136;CL:0000791,6.48e-25,18;CL:0000789,6.48e-25,18;CL:0002420,6.48e-25,18;CL:0002419,6.48e-25,18;CL:0000790,6.48e-25,18;CL:0000084,9.90e-25,25;CL:0000827,9.90e-25,25;CL:0000763,4.61e-19,108;CL:0000049,4.61e-19,108;CL:0002087,3.60e-17,115;CL:0000625,7.56e-16,11;CL:0002031,3.86e-15,120;CL:0000838,3.43e-12,52;CL:0000542,8.32e-12,53;CL:0000051,8.32e-12,53;CL:0000094,2.97e-10,8;CL:0000624,6.07e-10,6;CL:0000451,1.18e-09,10;CL:0000766,1.39e-09,72;CL:0000990,1.50e-07,8;CL:0000081,5.87e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000790;6.15e-25;18!CL:0000051;9.50e-07;53 | |||
|ontology_enrichment_disease=DOID:1240!2.23e-14!39;DOID:8692!1.12e-13!31;DOID:2531!1.86e-11!51;DOID:0060083!1.86e-11!51 | |||
|ontology_enrichment_disease_v019=DOID:8692;4.44e-11;31!DOID:1240;3.88e-10;39!DOID:2531;8.17e-08;51!DOID:0060083;8.17e-08;51 | |||
|ontology_enrichment_disease_v019_2=DOID:1240,1.35e-12,39;DOID:8692,2.51e-11,31;DOID:2531,4.83e-10,51;DOID:0060083,4.83e-10,51 | |||
|ontology_enrichment_uberon=UBERON:0002390!1.29e-24!102;UBERON:0003061!1.29e-24!102;UBERON:0002193!3.82e-22!112;UBERON:0007023!5.85e-19!115;UBERON:0002371!2.13e-14!80;UBERON:0002405!9.78e-13!115;UBERON:0001474!1.09e-12!86;UBERON:0004765!1.17e-09!101;UBERON:0001434!1.17e-09!101;UBERON:0000178!5.62e-08!15;UBERON:0000179!5.62e-08!15;UBERON:0000463!5.62e-08!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.57e-12;15!UBERON:0000179;5.57e-12;15!UBERON:0000463;5.57e-12;15!UBERON:0002390;3.00e-09;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.16e-14,98;UBERON:0003061,1.16e-14,98;UBERON:0002193,7.05e-14,108;UBERON:0000178,5.65e-12,15;UBERON:0000179,5.65e-12,15;UBERON:0000463,5.65e-12,15;UBERON:0002405,2.28e-07,93;UBERON:0004177,2.84e-07,7;UBERON:0005057,2.84e-07,7 | |||
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| |||
|short_description=p4@FYB | |||
}} |
Revision as of 15:37, 13 September 2013
Short description: | p4@FYB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_FYB_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -9bp_to_ENST00000515010, uc003jls.2_5end |
EntrezGene: | FYB |
HGNC: | 4036 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 5.44e-38 | 168 |
hematopoietic cell | 1.13e-34 | 177 |
hematopoietic oligopotent progenitor cell | 1.23e-31 | 161 |
hematopoietic multipotent progenitor cell | 1.23e-31 | 161 |
leukocyte | 6.51e-28 | 136 |
mature alpha-beta T cell | 6.48e-25 | 18 |
alpha-beta T cell | 6.48e-25 | 18 |
immature T cell | 6.48e-25 | 18 |
mature T cell | 6.48e-25 | 18 |
immature alpha-beta T cell | 6.48e-25 | 18 |
T cell | 9.90e-25 | 25 |
pro-T cell | 9.90e-25 | 25 |
myeloid cell | 4.61e-19 | 108 |
common myeloid progenitor | 4.61e-19 | 108 |
nongranular leukocyte | 3.60e-17 | 115 |
CD8-positive, alpha-beta T cell | 7.56e-16 | 11 |
hematopoietic lineage restricted progenitor cell | 3.86e-15 | 120 |
lymphoid lineage restricted progenitor cell | 3.43e-12 | 52 |
lymphocyte | 8.32e-12 | 53 |
common lymphoid progenitor | 8.32e-12 | 53 |
granulocyte | 2.97e-10 | 8 |
CD4-positive, alpha-beta T cell | 6.07e-10 | 6 |
dendritic cell | 1.18e-09 | 10 |
myeloid leukocyte | 1.39e-09 | 72 |
conventional dendritic cell | 1.50e-07 | 8 |
blood cell | 5.87e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.16e-14 | 98 |
blood island | 1.16e-14 | 98 |
hemolymphoid system | 7.05e-14 | 108 |
blood | 5.65e-12 | 15 |
haemolymphatic fluid | 5.65e-12 | 15 |
organism substance | 5.65e-12 | 15 |
immune system | 2.28e-07 | 93 |
hemopoietic organ | 2.84e-07 | 7 |
immune organ | 2.84e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
leukemia | 1.35e-12 | 39 |
myeloid leukemia | 2.51e-11 | 31 |
hematologic cancer | 4.83e-10 | 51 |
immune system cancer | 4.83e-10 | 51 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.