FFCP PHASE1:Hg19::chr5:121412802..121412811,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4015|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6664|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_uc011cwk.1_5end|coexpression_cluster_id=C4452|description=CAGE_peak_12_at_LOX_5end|id=chr5:121412802..121412811,-|ontology_enrichment_celltype=CL:0000055!6.89e-34!180;CL:0000057!7.31e-26!75;CL:0000222!1.17e-14!119;CL:0000144!6.85e-13!625;CL:0002371!6.22e-12!591;CL:0002620!1.04e-11!23;CL:0000548!2.59e-10!679;CL:0000004!2.59e-10!679;CL:0000255!2.59e-10!679;CL:0002139!2.79e-10!24;CL:0000012!5.78e-10!682;CL:0000220!2.28e-09!246;CL:0002321!4.49e-09!248;CL:0000680!8.65e-09!57;CL:0000056!8.65e-09!57;CL:0000355!8.65e-09!57;CL:0002334!1.46e-08!12;CL:0000048!2.59e-08!430;CL:0000187!3.44e-08!54;CL:0000359!4.06e-08!32;CL:0000723!6.66e-08!436;CL:0000213!1.62e-07!57;CL:0000215!1.62e-07!57;CL:0000115!2.69e-07!35;CL:0000183!2.86e-07!59;CL:0000034!4.40e-07!444;CL:0000393!5.08e-07!60;CL:0000211!5.08e-07!60;CL:0000192!6.33e-07!42;CL:0000514!6.33e-07!42|ontology_enrichment_celltype_v019=CL:0002620;2.59e-22;23!CL:0000057;1.20e-10;73!CL:0000359;2.19e-07;32|ontology_enrichment_celltype_v019_2=CL:0002620,6.74e-22,23;CL:0000057,1.14e-19,76;CL:0000048,5.97e-08,427;CL:0000359,8.85e-08,32;CL:0000723,1.17e-07,433;CL:0000034,2.80e-07,441|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:17;7.08e-09;5!DOID:450;7.08e-09;5!DOID:66;7.08e-09;5!DOID:423;7.08e-09;5!DOID:0080000;7.08e-09;5!DOID:11722;7.08e-09;5!DOID:3350;9.39e-07;2|ontology_enrichment_disease_v019_2=DOID:17,5.18e-09,5;DOID:450,5.18e-09,5;DOID:66,5.18e-09,5;DOID:423,5.18e-09,5;DOID:0080000,5.18e-09,5;DOID:11722,5.18e-09,5|ontology_enrichment_uberon=UBERON:0002049!2.52e-21!79;UBERON:0007798!2.52e-21!79;UBERON:0000055!2.86e-16!69;UBERON:0004535!2.37e-15!110;UBERON:0001009!2.29e-14!113;UBERON:0004872!2.31e-13!84;UBERON:0001981!3.01e-13!60;UBERON:0007500!3.01e-13!60;UBERON:0004537!3.01e-13!60;UBERON:0006965!3.01e-13!60;UBERON:0000490!7.24e-11!138;UBERON:0001637!1.61e-09!42;UBERON:0003509!1.61e-09!42;UBERON:0004572!1.61e-09!42;UBERON:0000914!3.26e-09!83;UBERON:0002329!3.26e-09!83;UBERON:0003077!3.26e-09!83;UBERON:0003059!3.26e-09!83;UBERON:0007282!3.26e-09!83;UBERON:0009618!3.26e-09!83;UBERON:0007285!3.26e-09!83;UBERON:0004290!4.55e-09!70;UBERON:0003914!5.06e-08!118;UBERON:0001134!1.62e-07!61;UBERON:0002036!1.62e-07!61;UBERON:0003082!1.62e-07!61;UBERON:0000486!2.47e-07!82;UBERON:0004573!4.03e-07!33;UBERON:0004571!4.03e-07!33;UBERON:0002385!5.88e-07!63;UBERON:0001015!5.88e-07!63;UBERON:0000383!5.88e-07!63;UBERON:0002199!7.46e-07!45;UBERON:0002416!7.46e-07!45|ontology_enrichment_uberon_v019=UBERON:0010260;2.46e-13;9!UBERON:0002097;1.51e-12;41!UBERON:0002199;2.83e-09;46!UBERON:0002416;2.83e-09;46!UBERON:0003102;1.00e-08;50!UBERON:0002066;1.45e-08;5!UBERON:0002049;1.26e-07;75!UBERON:0007798;1.26e-07;75!UBERON:0007500;6.80e-07;56!UBERON:0001981;6.80e-07;56!UBERON:0004537;6.80e-07;56|ontology_enrichment_uberon_v019_2=UBERON:0002097,3.62e-16,41;UBERON:0002199,6.46e-14,46;UBERON:0002416,6.46e-14,46;UBERON:0002049,1.32e-13,78;UBERON:0007798,1.32e-13,78;UBERON:0010260,4.17e-13,9;UBERON:0000055,3.82e-12,68;UBERON:0007500,2.95e-10,59;UBERON:0001981,2.95e-10,59;UBERON:0004537,2.95e-10,59;UBERON:0006965,2.95e-10,59;UBERON:0004535,5.33e-09,109;UBERON:0002066,1.04e-08,5;UBERON:0001009,1.34e-08,112;UBERON:0004872,5.89e-08,83;UBERON:0003102,2.70e-07,99|phase1_expression=0.908391896352783,0.642301571672949,0.563817616383885,1.0007329835313,0,0,0,0.631719873426831,0,0.245733936501509,0,0,0,0.123766352960047,0.662794751455832,0,1.20538905604795,0,0,0.984968464614303,0.408001382488506,0.313454721478088,0.286235987131057,0.547497700291537,0.753255837568817,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639312809217652,0.361439152384566,0.50133791063589,0.144846518960824,0,0,0.567208902984407,1.33037638477538,1.66886092816939,0,0,0,0,0,0,0,0,0,0.39752481473341,1.72046919021225,0.694281003215189,0,0,0.275118041940067,0.208994966536811,1.29208379584664,2.13459757612026,4.68608857870538,3.22263453687318,0.760272105718513,1.95249646038536,0.735326160691737,0.81014194788176,1.3394959242612,0.673588117878509,1.12611480483322,0,0,0.549605231791222,0,0,0,0.993943903390637,1.2663051166458,2.78059279707759,0.286836620748814,0.709336764396714,0,2.1349799145941,0.49333509683432,0.622422070799533,0.404132016209064,0,0.302714855289863,0.576175924479999,0.234321431833797,0.624320153660641,0,0.149448680551801,1.17434498643765,1.13311061057692,1.26405726032024,0,0.491337269247072,0.206651562351531,2.37600571456411,0.741800787835671,0,0.718618141816238,0,0,0.277064115484183,0.877955241761676,1.83892677479412,1.20190447125277,1.36118619792025,1.79389635688862,2.13557388818567,0.423863802319124,1.5004554804220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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4015 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6664 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc011cwk.1_5end | |||
|coexpression_cluster_id=C4452 | |||
|description=CAGE_peak_12_at_LOX_5end | |||
|id=chr5:121412802..121412811,- | |||
|ontology_enrichment_celltype=CL:0000055!6.89e-34!180;CL:0000057!7.31e-26!75;CL:0000222!1.17e-14!119;CL:0000144!6.85e-13!625;CL:0002371!6.22e-12!591;CL:0002620!1.04e-11!23;CL:0000548!2.59e-10!679;CL:0000004!2.59e-10!679;CL:0000255!2.59e-10!679;CL:0002139!2.79e-10!24;CL:0000012!5.78e-10!682;CL:0000220!2.28e-09!246;CL:0002321!4.49e-09!248;CL:0000680!8.65e-09!57;CL:0000056!8.65e-09!57;CL:0000355!8.65e-09!57;CL:0002334!1.46e-08!12;CL:0000048!2.59e-08!430;CL:0000187!3.44e-08!54;CL:0000359!4.06e-08!32;CL:0000723!6.66e-08!436;CL:0000213!1.62e-07!57;CL:0000215!1.62e-07!57;CL:0000115!2.69e-07!35;CL:0000183!2.86e-07!59;CL:0000034!4.40e-07!444;CL:0000393!5.08e-07!60;CL:0000211!5.08e-07!60;CL:0000192!6.33e-07!42;CL:0000514!6.33e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.59e-22;23!CL:0000057;1.20e-10;73!CL:0000359;2.19e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,6.74e-22,23;CL:0000057,1.14e-19,76;CL:0000048,5.97e-08,427;CL:0000359,8.85e-08,32;CL:0000723,1.17e-07,433;CL:0000034,2.80e-07,441 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;7.08e-09;5!DOID:450;7.08e-09;5!DOID:66;7.08e-09;5!DOID:423;7.08e-09;5!DOID:0080000;7.08e-09;5!DOID:11722;7.08e-09;5!DOID:3350;9.39e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:17,5.18e-09,5;DOID:450,5.18e-09,5;DOID:66,5.18e-09,5;DOID:423,5.18e-09,5;DOID:0080000,5.18e-09,5;DOID:11722,5.18e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0002049!2.52e-21!79;UBERON:0007798!2.52e-21!79;UBERON:0000055!2.86e-16!69;UBERON:0004535!2.37e-15!110;UBERON:0001009!2.29e-14!113;UBERON:0004872!2.31e-13!84;UBERON:0001981!3.01e-13!60;UBERON:0007500!3.01e-13!60;UBERON:0004537!3.01e-13!60;UBERON:0006965!3.01e-13!60;UBERON:0000490!7.24e-11!138;UBERON:0001637!1.61e-09!42;UBERON:0003509!1.61e-09!42;UBERON:0004572!1.61e-09!42;UBERON:0000914!3.26e-09!83;UBERON:0002329!3.26e-09!83;UBERON:0003077!3.26e-09!83;UBERON:0003059!3.26e-09!83;UBERON:0007282!3.26e-09!83;UBERON:0009618!3.26e-09!83;UBERON:0007285!3.26e-09!83;UBERON:0004290!4.55e-09!70;UBERON:0003914!5.06e-08!118;UBERON:0001134!1.62e-07!61;UBERON:0002036!1.62e-07!61;UBERON:0003082!1.62e-07!61;UBERON:0000486!2.47e-07!82;UBERON:0004573!4.03e-07!33;UBERON:0004571!4.03e-07!33;UBERON:0002385!5.88e-07!63;UBERON:0001015!5.88e-07!63;UBERON:0000383!5.88e-07!63;UBERON:0002199!7.46e-07!45;UBERON:0002416!7.46e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0010260;2.46e-13;9!UBERON:0002097;1.51e-12;41!UBERON:0002199;2.83e-09;46!UBERON:0002416;2.83e-09;46!UBERON:0003102;1.00e-08;50!UBERON:0002066;1.45e-08;5!UBERON:0002049;1.26e-07;75!UBERON:0007798;1.26e-07;75!UBERON:0007500;6.80e-07;56!UBERON:0001981;6.80e-07;56!UBERON:0004537;6.80e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,3.62e-16,41;UBERON:0002199,6.46e-14,46;UBERON:0002416,6.46e-14,46;UBERON:0002049,1.32e-13,78;UBERON:0007798,1.32e-13,78;UBERON:0010260,4.17e-13,9;UBERON:0000055,3.82e-12,68;UBERON:0007500,2.95e-10,59;UBERON:0001981,2.95e-10,59;UBERON:0004537,2.95e-10,59;UBERON:0006965,2.95e-10,59;UBERON:0004535,5.33e-09,109;UBERON:0002066,1.04e-08,5;UBERON:0001009,1.34e-08,112;UBERON:0004872,5.89e-08,83;UBERON:0003102,2.70e-07,99 | |||
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| |||
|short_description=p12@LOX | |||
}} |
Revision as of 12:52, 13 September 2013
Short description: | p12@LOX |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_LOX_5end |
Coexpression cluster: | C4452_Lens_Mesenchymal_osteoclastoma_Preadipocyte_basal_Fibroblast_epithelioid |
Association with transcript: | 0bp_to_uc011cwk.1_5end |
EntrezGene: | LOX |
HGNC: | 6664 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 6.74e-22 | 23 |
fibroblast | 1.14e-19 | 76 |
multi fate stem cell | 5.97e-08 | 427 |
vascular associated smooth muscle cell | 8.85e-08 | 32 |
somatic stem cell | 1.17e-07 | 433 |
stem cell | 2.80e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
skin of body | 3.62e-16 | 41 |
integument | 6.46e-14 | 46 |
integumental system | 6.46e-14 | 46 |
vasculature | 1.32e-13 | 78 |
vascular system | 1.32e-13 | 78 |
umbilical blood vessel | 4.17e-13 | 9 |
vessel | 3.82e-12 | 68 |
epithelial tube open at both ends | 2.95e-10 | 59 |
blood vessel | 2.95e-10 | 59 |
blood vasculature | 2.95e-10 | 59 |
vascular cord | 2.95e-10 | 59 |
cardiovascular system | 5.33e-09 | 109 |
umbilical vein | 1.04e-08 | 5 |
circulatory system | 1.34e-08 | 112 |
splanchnic layer of lateral plate mesoderm | 5.89e-08 | 83 |
surface structure | 2.70e-07 | 99 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 5.18e-09 | 5 |
myotonic disease | 5.18e-09 | 5 |
muscle tissue disease | 5.18e-09 | 5 |
myopathy | 5.18e-09 | 5 |
muscular disease | 5.18e-09 | 5 |
myotonic dystrophy | 5.18e-09 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.