FFCP PHASE1:Hg19::chr1:12014885..12014920,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=weak | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C750 | |||
|description=CAGE_peak_at_chr1:12014885..12014920,+ | |||
|id=chr1:12014885..12014920,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.16e-23!180;CL:0000222!8.52e-16!119;CL:0002371!8.33e-14!591;CL:0000680!2.49e-13!57;CL:0000056!2.49e-13!57;CL:0000355!2.49e-13!57;CL:0000144!4.91e-13!625;CL:0000183!6.26e-13!59;CL:0000548!8.75e-13!679;CL:0000004!8.75e-13!679;CL:0000255!8.75e-13!679;CL:0000192!1.28e-12!42;CL:0000514!1.28e-12!42;CL:0000012!2.06e-12!682;CL:0000057!2.36e-12!75;CL:0000187!5.46e-12!54;CL:0000359!8.65e-12!32;CL:0002321!8.53e-11!248;CL:0000220!1.48e-10!246;CL:0000393!1.64e-10!60;CL:0000211!1.64e-10!60;CL:0000034!1.74e-08!444;CL:0000723!2.19e-08!436;CL:0000048!2.37e-08!430;CL:0000003!6.57e-08!722;CL:0002494!8.22e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0000359;5.47e-17;32!CL:0000192;4.61e-10;43!CL:0002494;8.56e-10;16!CL:0002539;3.35e-07;10!CL:0000048;4.38e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,1.68e-17,32;CL:0000222,8.97e-14,121;CL:0000192,1.04e-13,43;CL:0000514,1.04e-13,43;CL:0000680,2.65e-12,58;CL:0000056,2.65e-12,58;CL:0000355,2.65e-12,58;CL:0000048,1.16e-11,427;CL:0000723,4.06e-11,433;CL:0000034,2.02e-10,441;CL:0000187,3.35e-10,55;CL:0002494,1.51e-09,16;CL:0000057,1.74e-09,76;CL:0000393,2.69e-09,61;CL:0000211,2.69e-09,61;CL:0002539,3.61e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000514;4.61e-10;43 | |||
|ontology_enrichment_disease=DOID:2394!2.09e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.35e-13;14!DOID:193;4.24e-08;29!DOID:120;1.15e-07;27 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,5.22e-14,14;DOID:193,3.18e-08,29;DOID:120,8.20e-08,27 | |||
|ontology_enrichment_uberon=UBERON:0001637!7.66e-16!42;UBERON:0003509!7.66e-16!42;UBERON:0004572!7.66e-16!42;UBERON:0001981!2.49e-15!60;UBERON:0007500!2.49e-15!60;UBERON:0004537!2.49e-15!60;UBERON:0006965!2.49e-15!60;UBERON:0003914!2.57e-15!118;UBERON:0004872!3.81e-15!84;UBERON:0000055!5.18e-15!69;UBERON:0002049!2.54e-14!79;UBERON:0007798!2.54e-14!79;UBERON:0000914!9.95e-13!83;UBERON:0002329!9.95e-13!83;UBERON:0003077!9.95e-13!83;UBERON:0003059!9.95e-13!83;UBERON:0007282!9.95e-13!83;UBERON:0009618!9.95e-13!83;UBERON:0007285!9.95e-13!83;UBERON:0001134!3.54e-12!61;UBERON:0002036!3.54e-12!61;UBERON:0003082!3.54e-12!61;UBERON:0002385!4.10e-12!63;UBERON:0001015!4.10e-12!63;UBERON:0000383!4.10e-12!63;UBERON:0005256!4.16e-12!143;UBERON:0004290!4.19e-12!70;UBERON:0004573!4.21e-12!33;UBERON:0004571!4.21e-12!33;UBERON:0004535!1.43e-11!110;UBERON:0001009!9.98e-11!113;UBERON:0000490!1.72e-10!138;UBERON:0000486!5.21e-10!82;UBERON:0000926!2.80e-09!448;UBERON:0004120!2.80e-09!448;UBERON:0006603!2.80e-09!448;UBERON:0002100!7.15e-09!216;UBERON:0003102!7.24e-08!95;UBERON:0003104!7.52e-07!238;UBERON:0009142!7.52e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.15e-17;42!UBERON:0003509;1.15e-17;42!UBERON:0004572;1.15e-17;42!UBERON:0004573;3.60e-17;33!UBERON:0004571;3.60e-17;33!UBERON:0003914;4.66e-10;74!UBERON:0007500;6.74e-10;56!UBERON:0001981;6.74e-10;56!UBERON:0004537;6.74e-10;56!UBERON:0000055;1.93e-09;65!UBERON:0000947;2.72e-09;21!UBERON:0010191;2.72e-09;21!UBERON:0003513;3.18e-08;7!UBERON:0004237;3.35e-07;10!UBERON:0004695;3.35e-07;10!UBERON:0002111;3.35e-07;10!UBERON:0004178;3.35e-07;10!UBERON:0002049;4.79e-07;75!UBERON:0007798;4.79e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,1.10e-23,42;UBERON:0003509,1.10e-23,42;UBERON:0004572,1.10e-23,42;UBERON:0000055,1.24e-19,68;UBERON:0004872,1.31e-19,83;UBERON:0007500,2.92e-19,59;UBERON:0001981,2.92e-19,59;UBERON:0004537,2.92e-19,59;UBERON:0006965,2.92e-19,59;UBERON:0004573,8.02e-19,33;UBERON:0004571,8.02e-19,33;UBERON:0003914,9.83e-18,117;UBERON:0002049,1.33e-15,78;UBERON:0007798,1.33e-15,78;UBERON:0004535,6.19e-15,109;UBERON:0001009,3.58e-14,112;UBERON:0007503,6.36e-12,78;UBERON:0001134,6.74e-12,62;UBERON:0002036,6.74e-12,62;UBERON:0003082,6.74e-12,62;UBERON:0002385,2.94e-11,64;UBERON:0001015,2.94e-11,64;UBERON:0000383,2.94e-11,64;UBERON:0007524,1.25e-10,73;UBERON:0002329,2.94e-10,71;UBERON:0003059,2.94e-10,71;UBERON:0007282,2.94e-10,71;UBERON:0004290,2.94e-10,71;UBERON:0009618,2.94e-10,71;UBERON:0003077,5.37e-10,72;UBERON:0007285,5.37e-10,72;UBERON:0000926,1.24e-09,315;UBERON:0004120,1.24e-09,315;UBERON:0006603,1.24e-09,315;UBERON:0000947,1.94e-09,21;UBERON:0010191,1.94e-09,21;UBERON:0003513,2.23e-08,7;UBERON:0000486,3.00e-08,83;UBERON:0005256,1.24e-07,122;UBERON:0000490,1.92e-07,148;UBERON:0004237,3.61e-07,10;UBERON:0004695,3.61e-07,10;UBERON:0002111,3.61e-07,10;UBERON:0004178,3.61e-07,10 | |||
|phase1_expression=0.908391896352783,2.5692062866918,0.986680828671798,5.00366491765652,2.68176656656373,5.23403114460221,5.06599756336621,0.631719873426831,0.522371256399677,1.47440361900905,2.79120467188971,0.436882744260345,1.05506791291381,0.37129905888014,1.65698687863958,2.6893005858071,3.01347264011988,3.65155045193687,4.39139518911456,0.123121058076788,0.408001382488506,0.940364164434263,0,0,0.502170558379211,0.0764134057479513,0.164201178899891,0.0787107813136792,0,0,0.154816123316076,0,0.30120591877825,0.369754010166788,0,0,0,0.553995408531877,0.401088894940283,0,0.223915474239924,0,0.257575567634187,0.290796477559129,0,0,0.232429036905685,0,0,0,0.256160706529101,0.236482229888585,0,0.645484683583826,0,0.188242339542605,0,0,0,0,0,0,0,0.426224750532694,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0.22465726229299,0.150176892841506,0,0,0.39783335439818,0.365328307529268,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0.130059347559878,0.328875809207352,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0.255973222308837,0,0,0,0,0.267440195783507,0,2.43806866313962,0.670700859703636,0.639312809217652,0.722878304769133,0.50133791063589,0.434539556882471,0.795285947051099,3.40644409211845,0.189069634328136,0.665188192387692,0.614843499851882,0.0654895377488563,0.364295288292542,0.370784442784429,0.324547393654683,0,0.531831842075461,0,0,0,0.596287222100115,1.72046919021225,1.38856200643038,0,1.25849830862972,1.10047216776027,0.835979866147242,1.03366703667732,0,1.00416183829401,0,0,1.70843440283719,0.367663080345869,3.24056779152704,0.535798369704479,0.22452937262617,0.450445921933289,1.53316637465883,0.949265659568129,0.916008719652036,0,0,0.436094052142534,1.49091585508596,1.77282716330412,1.32409180813219,6.02356903572509,0.354668382198357,1.12135520028461,2.1349799145941,4.19334832309172,0,1.21239604862719,1.14423332179421,0.605429710579726,0.576175924479999,0.234321431833797,2.18512053781224,0.570471821544449,0.896692083310806,0.822041490506354,0.647491777472526,0.702254033511242,0.408308342509787,0.491337269247072,0.619954687054593,0,1.23633464639278,0,1.43723628363248,0.505008341862199,0.625592599359821,0.277064115484183,0.438977620880838,0.919463387397059,0.45071417671979,0.794025282120147,1.79389635688862,2.13557388818567,0.423863802319124,1.80054657650641,1.8549455262919,2.83404594050192,1.67505170698431,0.506328996723799,1.07180705677318,0.757301322732344,1.28869858099219,0.646584227275248,1.77504796258307,1.5112814734146,0.339121184620975,0,0.545492241181669,0,0.609868530647977,0.397589304964456,0.580969714347592,0.10366105501537,0.504641701751257,0,0,0,0,0.928735856063958,0,0.473227200159376,0.674338760312407,1.44606617930089,0.55146986366197,0.435758888184812,0.71181185733329,0.943819157121151,0.588664395376038,1.15424147083917,1.4763109092493,5.60967095213783,0.8231480226628,0,0,0,0,0,0.368965315629341,0,0.439001141634502,0,0.402115889646523,0.0925884451585296,0,2.07986957055916,2.88662684050547,0.115930404975077,0.70445216541493,0.288732895522148,1.38895653772983,0.190254152234598,0,0,0.246217006087397,0,0.594524649154913,0,0.671928512795438,0.141775097242386,0.268675568108545,0,0,0,0,0,0,0,0.126995788584338,1.14596527667483,0,1.71072446022705,0.411309970813294,0.600686115687835,0,0.672786506072164,0,0.1466765716419,0.904902010304444,0,0,1.06375246633948,2.08014873822732,0.257207374262142,0,0,1.42977993658148,1.62786481617433,0.823240336780769,0,0.710783897485092,0.791951872933429,1.20575750823834,0.871533458600294,1.3996218765488,0,1.00451418286425,0,0.479249710983165,0,0,1.73737568001095,1.84928690295345,1.43248770591916,0.336255431980582,0,0,0,1.01637849688985,0,0,0,0,0,0,0,0.613457458595699,1.00034104211935,1.08506009479894,1.03985430765404,1.60586089917446,0.788512075169673,0.819989904948992,1.20378439891088,4.5481500811197,1.03473071292505,0.664225598535437,0.553107505625109,1.21637060255316,0.391602314925481,0.686286847621712,0,0.215714200818617,0,0.303127571446259,0,0.907170879989041,1.24053903909388,0.460385919864187,1.40330047216537,2.17836553734692,0.511707249066704,2.2519548960105,0,1.54209693802656,0.887808626565635,0,3.11552657510173,0.813472649219715,0.241718899183244,1.40354529212299,0.0920809889358963,0.229628896329213,0.910455840033585,1.44236856455367,0,0.15403067420883,0,1.46139224653261,0.316654886678627,1.13733384070897,0.680374821106063,0.863663664408557,3.08454505380579,0.541892875087706,1.00337954770971,0.254876273045038,1.66215201785745,0.447749509444357,0.219259876645935,0,0,0,0,0.412164046590889,1.09883357782012,0.247528499761764,0,0.650060246036521,0,0.773365746336976,0,0.15350367472613,0.275673144969061,0.322260734604821,0.580066775656914,0.255679882248303,0.356128142586949,0.165284915360978,0.576570202095319,0.127612712494584,0.4046311234222,0,9.12955805808856,1.3940745403212,3.08033580176089,0.532306030317022,0,2.40921484835096,1.5743737541619,0.372158369359667,0,0.953150969619124,0.511795582622668,0,0.636406495851874,3.1397945607969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| |||
|short_description=p@chr1:12014885..12014920,+ | |||
}} |
Revision as of 16:22, 10 January 2014
Short description: | p@chr1:12014885..12014920, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:12014885..12014920, + |
Coexpression cluster: | C750_Smooth_Mesenchymal_Fibroblast_Hepatic_Chondrocyte_Lens_tenocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 1.68e-17 | 32 |
mesodermal cell | 8.97e-14 | 121 |
smooth muscle cell | 1.04e-13 | 43 |
smooth muscle myoblast | 1.04e-13 | 43 |
muscle precursor cell | 2.65e-12 | 58 |
myoblast | 2.65e-12 | 58 |
multi-potent skeletal muscle stem cell | 2.65e-12 | 58 |
multi fate stem cell | 1.16e-11 | 427 |
somatic stem cell | 4.06e-11 | 433 |
stem cell | 2.02e-10 | 441 |
muscle cell | 3.35e-10 | 55 |
cardiocyte | 1.51e-09 | 16 |
fibroblast | 1.74e-09 | 76 |
electrically responsive cell | 2.69e-09 | 61 |
electrically active cell | 2.69e-09 | 61 |
aortic smooth muscle cell | 3.61e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 5.22e-14 | 14 |
reproductive organ cancer | 3.18e-08 | 29 |
female reproductive organ cancer | 8.20e-08 | 27 |