FFCP PHASE1:Hg19::chr1:8484314..8484348,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=473 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9965 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-20bp_to_ENST00000465125_5end | |||
|description=CAGE_peak_7_at_RERE_5end | |||
|id=chr1:8484314..8484348,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!9.99e-26!115;UBERON:0003075!4.56e-11!86;UBERON:0007284!4.56e-11!86;UBERON:0001049!1.09e-10!57;UBERON:0005068!1.09e-10!57;UBERON:0006241!1.09e-10!57;UBERON:0007135!1.09e-10!57;UBERON:0002346!1.25e-10!90;UBERON:0001869!2.29e-10!32;UBERON:0002616!4.25e-10!59;UBERON:0002020!1.26e-09!34;UBERON:0003528!1.26e-09!34;UBERON:0002619!1.65e-09!22;UBERON:0001893!2.51e-09!34;UBERON:0003080!3.73e-09!42;UBERON:0000955!6.42e-09!69;UBERON:0006238!6.42e-09!69;UBERON:0002791!6.96e-09!33;UBERON:0000956!7.95e-09!25;UBERON:0000203!7.95e-09!25;UBERON:0002780!1.07e-08!41;UBERON:0001890!1.07e-08!41;UBERON:0006240!1.07e-08!41;UBERON:0003056!1.18e-08!61;UBERON:0001950!2.06e-08!20;UBERON:0000119!3.24e-08!312;UBERON:0000483!3.54e-08!309;UBERON:0005743!3.38e-07!86;UBERON:0001017!5.94e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;3.69e-10;32!UBERON:0002619;3.94e-10;22!UBERON:0000956;1.55e-09;25!UBERON:0000203;1.55e-09;25!UBERON:0001893;2.82e-09;34!UBERON:0002791;4.16e-09;32!UBERON:0003528;4.34e-09;34!UBERON:0002020;4.34e-09;34!UBERON:0001950;5.66e-09;20!UBERON:0002780;9.56e-07;41!UBERON:0001890;9.56e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.55e-26,114;UBERON:0001869,9.12e-11,32;UBERON:0000073,1.00e-10,53;UBERON:0002616,1.00e-10,53;UBERON:0001049,2.37e-10,56;UBERON:0005068,2.37e-10,56;UBERON:0006241,2.37e-10,56;UBERON:0007135,2.37e-10,56;UBERON:0002619,5.35e-10,22;UBERON:0003528,8.14e-10,34;UBERON:0002020,8.14e-10,34;UBERON:0001893,1.65e-09,34;UBERON:0002791,1.80e-09,32;UBERON:0000956,2.86e-09,25;UBERON:0000203,2.86e-09,25;UBERON:0003075,4.16e-09,82;UBERON:0007284,4.16e-09,82;UBERON:0001950,7.37e-09,20;UBERON:0002346,8.86e-09,86;UBERON:0002780,1.36e-08,41;UBERON:0001890,1.36e-08,41;UBERON:0003080,1.36e-08,41;UBERON:0006240,1.36e-08,41;UBERON:0000955,3.66e-08,68;UBERON:0006238,3.66e-08,68;UBERON:0003056,1.37e-07,61;UBERON:0000119,3.89e-07,309;UBERON:0000483,4.24e-07,306 | |||
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| |||
|short_description=p7@RERE | |||
}} |
Revision as of 16:09, 10 January 2014
Short description: | p7@RERE |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_RERE_5end |
Coexpression cluster: | NA |
Association with transcript: | -20bp_to_ENST00000465125_5end |
EntrezGene: | RERE |
HGNC: | 9965 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 5.55e-26 | 114 |
cerebral hemisphere | 9.12e-11 | 32 |
regional part of nervous system | 1.00e-10 | 53 |
regional part of brain | 1.00e-10 | 53 |
neural tube | 2.37e-10 | 56 |
neural rod | 2.37e-10 | 56 |
future spinal cord | 2.37e-10 | 56 |
neural keel | 2.37e-10 | 56 |
regional part of cerebral cortex | 5.35e-10 | 22 |
brain grey matter | 8.14e-10 | 34 |
gray matter | 8.14e-10 | 34 |
telencephalon | 1.65e-09 | 34 |
regional part of telencephalon | 1.80e-09 | 32 |
cerebral cortex | 2.86e-09 | 25 |
pallium | 2.86e-09 | 25 |
neural plate | 4.16e-09 | 82 |
presumptive neural plate | 4.16e-09 | 82 |
neocortex | 7.37e-09 | 20 |
neurectoderm | 8.86e-09 | 86 |
regional part of forebrain | 1.36e-08 | 41 |
forebrain | 1.36e-08 | 41 |
anterior neural tube | 1.36e-08 | 41 |
future forebrain | 1.36e-08 | 41 |
brain | 3.66e-08 | 68 |
future brain | 3.66e-08 | 68 |
pre-chordal neural plate | 1.37e-07 | 61 |
cell layer | 3.89e-07 | 309 |
epithelium | 4.24e-07 | 306 |