FFCP PHASE1:Hg19::chr22:24096630..24096641,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=29802 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12710 | |||
|TSSclassifier=strong | |||
|UniProt=Q9UKI3 | |||
|association_with_transcript=0bp_to_NM_013378,uc002zxt.2_5end | |||
|coexpression_cluster_id=C47 | |||
|description=CAGE_peak_2_at_VPREB3_5end | |||
|id=chr22:24096630..24096641,- | |||
|ontology_enrichment_celltype=CL:0000945!2.83e-54!24;CL:0000826!2.83e-54!24;CL:0000236!4.17e-38!14;CL:0000542!9.49e-24!53;CL:0000051!9.49e-24!53;CL:0000838!6.98e-22!52;CL:0002087!4.61e-10!119;CL:0002322!1.70e-09!5;CL:0000738!1.13e-07!140;CL:0000037!3.72e-07!172;CL:0000566!3.72e-07!172;CL:0002031!8.36e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000236;2.43e-71;13!CL:0000945;6.08e-53;24!CL:0000542;2.84e-20;53!CL:0000817;1.74e-09;1!CL:0002032;8.82e-09;1!CL:0000557;8.82e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,3.34e-66,14;CL:0000945,5.36e-53,24;CL:0000826,5.36e-53,24;CL:0000542,1.72e-26,53;CL:0000051,1.72e-26,53;CL:0000838,3.18e-23,52;CL:0002087,1.05e-10,115;CL:0000738,1.14e-08,136;CL:0002031,1.23e-08,120;CL:0002032,4.31e-08,161;CL:0000837,4.31e-08,161;CL:0000037,1.21e-07,168;CL:0000988,4.07e-07,177 | |||
|ontology_enrichment_development_v019=CL:0000051;2.84e-20;53!UBERON:0001045;5.98e-09;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:12603;4.19e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:12603,4.19e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.43e-07!115;UBERON:0001829!4.37e-07!2;UBERON:0000178!9.09e-07!15;UBERON:0000179!9.09e-07!15;UBERON:0000463!9.09e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;6.99e-11;3!UBERON:0001301;2.82e-09;1!UBERON:0000029;4.19e-09;1!UBERON:0001154;5.98e-09;1!UBERON:0001153;5.98e-09;1!UBERON:0009854;5.98e-09;1!UBERON:0002372;8.82e-09;1!UBERON:0001961;8.82e-09;1!UBERON:0001744;8.82e-09;1!UBERON:0001042;8.82e-09;1!UBERON:0001735;8.82e-09;1!UBERON:0004177;7.18e-07;5!UBERON:0005057;7.18e-07;5!UBERON:0002405;8.49e-07;27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,8.56e-11,3;UBERON:0004854,8.56e-11,3;UBERON:0009034,8.56e-11,3;UBERON:0002095,8.56e-11,3;UBERON:0004782,8.56e-11,3;UBERON:0003281,8.56e-11,3;UBERON:0009664,8.56e-11,3;UBERON:0002296,8.56e-11,3;UBERON:0005602,8.56e-11,3;UBERON:0001179,8.56e-11,3;UBERON:0006293,8.56e-11,3;UBERON:0001301,2.82e-09,1;UBERON:0000029,3.88e-09,1;UBERON:0001154,6.22e-09,1;UBERON:0001153,6.22e-09,1;UBERON:0001045,6.22e-09,1;UBERON:0002372,7.27e-09,1;UBERON:0001961,7.27e-09,1;UBERON:0001744,7.27e-09,1;UBERON:0001735,7.27e-09,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382067028739756,0.0821005894499457,0.157421562627358,0,0,0,0,0,0,5.96497444468323,4.54941543959749,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.3595868907455,9.28435639145624,8.00558328477199,5.54749289336459,9.20910770182829,5.17277195959035,8.59358334620321,10.494591299889,0.569212969109448,2.93618594685469,1.91136614062614,1.32171328579026,0,3.423993102076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0.232387885739037,0,0.756962552626885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0.569647187174163,0,1.23408681925858,0,0,0.79312517629427,0,0,0,4.64507937814297,14.5711905106209,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48655523978033,0,0,0.246169610922139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0.202203398942031,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0.173559738335131,0,0,6.11543338847105,0,0,0,0,0.0969890164884194,0,1.35588444468319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27746588066972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508039992394707,0,0,0.482259445395058,0.137539436597234,0.415440338029185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.96166021811951,0,0.365377795142688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47317047000752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.548257766857182,0,0,0,0,0,3.03482802118316,0,0,0.806637912890455,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154348316215889,0,0,0,0,0,0,0.4226557275834,0,1.03382309777839,1.28915775947154,0,0,0,0,0,0.458729283404541,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.530450887527676,0,0,0,0,0,0,0,0,0,0,0,0,1.68380132536469,0.143444410785353,0,0,0,0,0,0,0,0,0,0.603821380773079,0 | |||
|short_description=p2@VPREB3 | |||
}} |
Revision as of 14:52, 21 January 2014
Short description: | p2@VPREB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_VPREB3_5end |
Coexpression cluster: | C47_CD19_Burkitt_acute_xeroderma_tonsil_lymphoma_appendix |
Association with transcript: | 0bp_to_NM_013378, uc002zxt.2_5end |
EntrezGene: | VPREB3 |
HGNC: | 12710 |
UniProt: | Q9UKI3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 3.34e-66 | 14 |
lymphocyte of B lineage | 5.36e-53 | 24 |
pro-B cell | 5.36e-53 | 24 |
lymphocyte | 1.72e-26 | 53 |
common lymphoid progenitor | 1.72e-26 | 53 |
lymphoid lineage restricted progenitor cell | 3.18e-23 | 52 |
nongranular leukocyte | 1.05e-10 | 115 |
leukocyte | 1.14e-08 | 136 |
hematopoietic lineage restricted progenitor cell | 1.23e-08 | 120 |
hematopoietic oligopotent progenitor cell | 4.31e-08 | 161 |
hematopoietic multipotent progenitor cell | 4.31e-08 | 161 |
hematopoietic stem cell | 1.21e-07 | 168 |
hematopoietic cell | 4.07e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
spleen | 8.56e-11 | 3 |
gastrointestinal system mesentery | 8.56e-11 | 3 |
stomach region | 8.56e-11 | 3 |
mesentery | 8.56e-11 | 3 |
gastrointestinal system serosa | 8.56e-11 | 3 |
mesentery of stomach | 8.56e-11 | 3 |
gut mesentery | 8.56e-11 | 3 |
dorsal mesentery | 8.56e-11 | 3 |
dorsal mesogastrium | 8.56e-11 | 3 |
peritoneal cavity | 8.56e-11 | 3 |
spleen primordium | 8.56e-11 | 3 |
epididymis | 2.82e-09 | 1 |
lymph node | 3.88e-09 | 1 |
vermiform appendix | 6.22e-09 | 1 |
caecum | 6.22e-09 | 1 |
midgut | 6.22e-09 | 1 |
tonsil | 7.27e-09 | 1 |
mucosa-associated lymphoid tissue | 7.27e-09 | 1 |
lymphoid tissue | 7.27e-09 | 1 |
tonsillar ring | 7.27e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
acute leukemia | 4.19e-09 | 1 |