FFCP PHASE1:Hg19::chr2:238395879..238395975,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79083 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29643 | |||
|TSSclassifier=strong | |||
|UniProt=B8ZZ97,B4DKW7 | |||
|association_with_transcript=0bp_to_ENST00000338530,ENST00000409373,ENST00000445024,ENST00000468178,ENST00000469619,ENST00000477222_5end | |||
|description=CAGE_peak_1_at_MLPH_5end | |||
|id=chr2:238395879..238395975,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.80e-15!180;CL:0000183!8.06e-09!59;CL:0000680!8.45e-09!57;CL:0000056!8.45e-09!57;CL:0000355!8.45e-09!57;CL:0000187!1.34e-07!54;CL:0000075!3.55e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0000075;4.28e-07;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,1.68e-08,58;CL:0000056,1.68e-08,58;CL:0000355,1.68e-08,58;CL:0000187,2.75e-07,55;CL:0000075,3.63e-07,27 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000481!1.05e-22!347;UBERON:0000475!5.14e-21!365;UBERON:0003104!1.40e-19!238;UBERON:0009142!1.40e-19!238;UBERON:0002100!1.61e-19!216;UBERON:0005256!1.50e-16!143;UBERON:0000466!4.69e-13!126;UBERON:0000119!6.57e-13!312;UBERON:0000468!6.68e-13!659;UBERON:0000464!2.84e-12!104;UBERON:0001048!3.53e-12!168;UBERON:0004119!4.92e-12!169;UBERON:0000925!4.92e-12!169;UBERON:0006595!4.92e-12!169;UBERON:0000483!5.98e-12!309;UBERON:0000062!9.68e-11!511;UBERON:0004290!3.71e-10!70;UBERON:0000467!5.03e-10!625;UBERON:0000914!5.10e-10!83;UBERON:0002329!5.10e-10!83;UBERON:0003077!5.10e-10!83;UBERON:0003059!5.10e-10!83;UBERON:0007282!5.10e-10!83;UBERON:0009618!5.10e-10!83;UBERON:0007285!5.10e-10!83;UBERON:0001007!5.99e-10!155;UBERON:0001555!5.99e-10!155;UBERON:0007026!5.99e-10!155;UBERON:0000486!8.09e-10!82;UBERON:0000480!8.38e-10!626;UBERON:0000077!1.86e-09!130;UBERON:0000922!5.77e-09!612;UBERON:0002050!1.25e-08!605;UBERON:0005423!1.25e-08!605;UBERON:0000923!1.26e-08!604;UBERON:0005291!1.26e-08!604;UBERON:0006598!1.26e-08!604;UBERON:0002532!1.26e-08!604;UBERON:0002553!1.36e-08!70;UBERON:0002385!2.80e-08!63;UBERON:0001015!2.80e-08!63;UBERON:0000383!2.80e-08!63;UBERON:0004921!2.81e-08!129;UBERON:0004185!2.81e-08!129;UBERON:0005177!3.87e-08!107;UBERON:0001134!4.16e-08!61;UBERON:0002036!4.16e-08!61;UBERON:0003082!4.16e-08!61;UBERON:0003102!2.51e-07!95;UBERON:0002200!3.64e-07!11;UBERON:0006876!3.64e-07!11;UBERON:0000058!3.94e-07!26 | |||
|ontology_enrichment_uberon_v019=UBERON:0006876;1.85e-07;11!UBERON:0002385;6.75e-07;31!UBERON:0001015;6.75e-07;31!UBERON:0000383;6.75e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,1.69e-19,199;UBERON:0003104,1.02e-15,160;UBERON:0009142,1.02e-15,160;UBERON:0005256,2.37e-14,122;UBERON:0007503,2.85e-11,78;UBERON:0002329,5.22e-10,71;UBERON:0003059,5.22e-10,71;UBERON:0007282,5.22e-10,71;UBERON:0004290,5.22e-10,71;UBERON:0009618,5.22e-10,71;UBERON:0003077,1.45e-09,72;UBERON:0007285,1.45e-09,72;UBERON:0000119,1.48e-09,309;UBERON:0007524,3.84e-09,73;UBERON:0000486,4.64e-09,83;UBERON:0001048,8.25e-09,160;UBERON:0000483,1.01e-08,306;UBERON:0004119,1.45e-08,160;UBERON:0000925,1.45e-08,160;UBERON:0006595,1.45e-08,160;UBERON:0005177,3.95e-08,101;UBERON:0002385,4.41e-08,64;UBERON:0001015,4.41e-08,64;UBERON:0000383,4.41e-08,64;UBERON:0001134,6.72e-08,62;UBERON:0002036,6.72e-08,62;UBERON:0003082,6.72e-08,62;UBERON:0000490,1.73e-07,148;UBERON:0006876,1.84e-07,11 | |||
|phase1_expression=1.63510541343501,2.14100523890983,0.140954404095971,3.00219895059391,3.12872766099101,0.872338524100369,7.59899634504932,9.47579810140246,0.522371256399677,24.0819257771479,34.8900583986214,69.2459149652646,93.3735102928726,30.3227564752114,31.8141480698799,10.7572023432284,13.2592796165275,16.0668219885222,15.6138495612962,229.620773313209,312.937060368684,88.3942314568208,6.86966369114536,12.0449494064138,7.53255837568817,0,0,0,0,0,0.928896739896456,1.83884244895785,2.409647350226,4.06729411183466,0,0,0,0,0,0,2.01523926815932,7.77344798445551,1.28787783817093,0,0.377875943688809,0,0,0.822335776043652,0.309706370895104,0,0.256160706529101,0,0,0,0,0.188242339542605,1.63743690034707,0.224723484445085,0,0.320929027076094,0,0,0.199463657621632,0,0,0,0,0,0,0,9.08099253950053,0.368277635987565,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.75227465255847,2.68280343881454,0.895037932904712,0,3.00802746381534,1.15877215168659,8.74814541756209,1.94653948121054,132.159674395367,130.376885707988,95.2129076913486,15.4555309087301,0.728590576585084,1.48313777113772,0,0,0,0,0,0,0,4.30117297553062,0.347140501607594,0,0,0,0,0,4.26919515224052,3.68192674041137,0,0,0,0,0,0,0,0,0,0,0.916008719652036,0,0,6.97750483428055,0.496971951695318,1.01304409331664,19.993786302796,3.15520282823695,1.41867352879343,13.4562624034154,3.20246987189115,49.333509683432,10.8923862389918,22.3619715635682,8.00963325255948,98.5336853968503,56.4652405990399,42.4121791619172,14.9836836878554,42.2149147942892,18.5316363884233,26.3053276962033,38.3638878152472,34.9722508688599,69.6165723979186,49.9935671458896,50.7329585573008,4.75201142912821,7.66527480763526,116.500654328067,93.420358436111,22.893711497753,11.8862593878366,62.3394259839412,10.0964852802593,9.50112166976961,9.6152357700222,12.5909723307623,18.6565221116416,3.84403299873421,9.11307174986116,53.1161240069392,14.7365116810968,43.0259701876201,22.3340227597908,9.28269827326964,3.31285817548075,23.9812085531909,4.41839513483037,2.10139873864455,10.6502877754984,8.7654325458047,27.6383765466095,2.89891279744945,0.818238361772504,0.286804595389004,3.29329006549908,1.06023814657188,2.5562667431294,2.69518743039963,2.27088765788066,1.82488679537915,23.4674298494724,10.935095949279,81.4996035979635,11.1448302727675,21.6563844500876,0.118306800039844,0.168584690078102,0.241011029883482,0.220587945464788,0,0.237270619111097,0.943819157121151,0.196221465125346,0,0,44.8773676171027,9.8777762719536,22.0513067078313,30.4212083572394,12.7767538168091,28.3579155207074,0,2.33678033231916,95.2201347156817,0.219500570817251,1.1240175325762,0.201057944823262,0.185176890317059,30.9517890044808,31.1980435583874,112.578446779713,80.8034922676285,42.3845386191316,0.577465791044295,0,0,158.831083989814,154.527509177077,0.984868024349589,1.40402559083543,0.148631162288728,0,0.335964256397719,0.141775097242386,2.68675568108545,7.55648240136301,8.81780162079986,69.465516543328,173.455415006055,299.381798840875,306.831380824711,289.473899846689,146.299148449157,210.857610908169,480.591533561193,212.129833068154,130.076778269704,181.106863879882,245.239079197036,131.305499768417,81.9604929406567,96.9532138552959,9.82465039759111,92.9906759214894,54.94467891614,28.721316591166,35.3625285498645,124.745576517139,62.4136180902424,154.791286008354,6.0050757336422,7.05408087008876,21.4042487563,48.5346914597665,6.04166312862328,24.5505080609363,4.22015127883421,6.10073421020206,1.59956785891291,6.08118903205952,2.51128545716063,2.10833939483032,19.4096132948182,5.7430967917057,58.4811310666945,54.003427387007,160.477007911849,86.3073842816297,0,0,0,0,0,1.30139853857622,0,1.84267891867784,0,0,0,0,26.2559792278959,108.53700306995,82.4645672047196,3.53550464602372,1.60586089917446,1.57702415033935,1.87426263988341,12.3387900888365,31.8370505678379,22.7640756843511,29.2259263355592,48.8578296635513,19.6356968697867,263.744159102312,105.001887686122,0,0,0,30.3127571446259,51.5949862482541,26.0055652263525,3.47350930946288,3.83654933220156,1.68396056659844,2.17836553734692,1.53512174720011,1.12597744800525,0,15.1125499926602,17.4010490806865,18.3143557910794,19.7316683089776,18.3612397966736,0.120859449591622,11.4288688072872,9.11601790465374,15.3851360540573,28.952495713068,18.22629367936,41.0591647745745,21.5642943892361,56.4731833807336,65.7626510939673,37.6819315147566,4.54933536283586,0,33.0351351636273,32.3877230649608,127.615772083155,116.893717308181,17.5864628401076,19.1147482053607,34.2528374724933,0,0,3.07740150139667,21.9769812618803,36.1170018077376,24.7298427954533,0,0,5.16838984196555,2.60024098414608,0,15.7573270816159,46.0605365172787,31.4682533188566,48.1049637971012,52.5284997405858,31.4686225793876,52.1586959786538,1.60257664164127,5.45440220691228,4.03599141466723,13.5269475244259,7.78914912587734,27.4258874085399,45.3329779436122,30.6696398870664,1.54016790088044,9.58150854570639,44.3665825958287,7.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| |||
|short_description=p1@MLPH | |||
}} |
Revision as of 09:26, 21 January 2014
Short description: | p1@MLPH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MLPH_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000338530, ENST00000409373, ENST00000445024, ENST00000468178, ENST00000469619, ENST00000477222_5end |
EntrezGene: | MLPH |
HGNC: | 29643 |
UniProt: | B8ZZ97B4DKW7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 1.68e-08 | 58 |
myoblast | 1.68e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.68e-08 | 58 |
muscle cell | 2.75e-07 | 55 |
columnar/cuboidal epithelial cell | 3.63e-07 | 27 |
Ontology term | p-value | n |
---|---|---|
trunk | 1.69e-19 | 199 |
mesenchyme | 1.02e-15 | 160 |
entire embryonic mesenchyme | 1.02e-15 | 160 |
trunk mesenchyme | 2.37e-14 | 122 |
epithelial vesicle | 2.85e-11 | 78 |
somite | 5.22e-10 | 71 |
presomitic mesoderm | 5.22e-10 | 71 |
presumptive segmental plate | 5.22e-10 | 71 |
dermomyotome | 5.22e-10 | 71 |
trunk paraxial mesoderm | 5.22e-10 | 71 |
paraxial mesoderm | 1.45e-09 | 72 |
presumptive paraxial mesoderm | 1.45e-09 | 72 |
cell layer | 1.48e-09 | 309 |
dense mesenchyme tissue | 3.84e-09 | 73 |
multilaminar epithelium | 4.64e-09 | 83 |
primordium | 8.25e-09 | 160 |
epithelium | 1.01e-08 | 306 |
endoderm-derived structure | 1.45e-08 | 160 |
endoderm | 1.45e-08 | 160 |
presumptive endoderm | 1.45e-08 | 160 |
trunk region element | 3.95e-08 | 101 |
muscle tissue | 4.41e-08 | 64 |
musculature | 4.41e-08 | 64 |
musculature of body | 4.41e-08 | 64 |
skeletal muscle tissue | 6.72e-08 | 62 |
striated muscle tissue | 6.72e-08 | 62 |
myotome | 6.72e-08 | 62 |
unilaminar epithelium | 1.73e-07 | 148 |
vasculature of organ | 1.84e-07 | 11 |