FFCP PHASE1:Mm9::chr11:86940554..86940607,+: Difference between revisions
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{{FFCP|EntrezGene=68729|HGNC=|MCL_coexpression_id=1|UniProt=Q6PCX9,Q5SX31|association_with_transcript=0bp_to_ENSMUST00000041282,NM_197987,uc007ktm.1,uc011ybw.1_5end|description=CAGE_peak_1_at_Trim37_5end|id=chr11:86940554..86940607,+|ontology_enrichment_celltype=CL:0000540!2.75e-13!33;CL:0000047!2.75e-13!33;CL:0000031!2.75e-13!33;CL:0000404!2.75e-13!33;CL:0000117!7.18e-13!23;CL:0000337!7.18e-13!23;CL:0000393!1.52e-09!39;CL:0000211!1.52e-09!39|ontology_enrichment_celltype_v019_2=CL:0000540,2.75e-13,33;CL:0000047,2.75e-13,33;CL:0000031,2.75e-13,33;CL:0000404,2.75e-13,33;CL:0000117,7.18e-13,23;CL:0000337,7.18e-13,23;CL:0000393,1.52e-09,39;CL:0000211,1.52e-09,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.12e-22!73;UBERON:0005743!4.12e-22!73;UBERON:0002346!2.66e-21!71;UBERON:0003075!2.66e-21!71;UBERON:0007284!2.66e-21!71;UBERON:0000033!3.74e-21!63;UBERON:0000073!8.58e-21!75;UBERON:0001016!8.58e-21!75;UBERON:0001049!2.42e-20!52;UBERON:0005068!2.42e-20!52;UBERON:0006241!2.42e-20!52;UBERON:0007135!2.42e-20!52;UBERON:0000955!1.47e-19!50;UBERON:0006238!1.47e-19!50;UBERON:0003056!1.63e-19!49;UBERON:0002616!4.86e-19!49;UBERON:0004121!2.85e-17!102;UBERON:0000924!2.85e-17!102;UBERON:0006601!2.85e-17!102;UBERON:0007811!1.05e-16!86;UBERON:0003080!1.57e-16!40;UBERON:0002020!4.33e-16!34;UBERON:0002780!7.93e-16!39;UBERON:0001890!7.93e-16!39;UBERON:0006240!7.93e-16!39;UBERON:0000153!1.64e-15!94;UBERON:0002791!1.31e-13!29;UBERON:0003528!1.31e-13!29;UBERON:0001893!1.31e-13!29;UBERON:0000956!2.13e-09!21;UBERON:0001869!2.13e-09!21;UBERON:0000203!2.13e-09!21;UBERON:0002021!1.38e-07!10;UBERON:0000411!1.38e-07!10;UBERON:0001950!1.38e-07!10;UBERON:0002619!2.37e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.36e-23,64;UBERON:0003075,1.36e-23,64;UBERON:0007284,1.36e-23,64;UBERON:0001017,4.12e-22,73;UBERON:0000073,1.07e-21,54;UBERON:0001016,8.58e-21,75;UBERON:0001049,2.42e-20,52;UBERON:0005068,2.42e-20,52;UBERON:0006241,2.42e-20,52;UBERON:0007135,2.42e-20,52;UBERON:0010371,9.36e-20,73;UBERON:0003056,1.63e-19,49;UBERON:0004121,1.71e-18,95;UBERON:0000924,1.71e-18,95;UBERON:0006601,1.71e-18,95;UBERON:0000955,1.42e-17,47;UBERON:0006238,1.42e-17,47;UBERON:0002616,4.58e-17,46;UBERON:0003080,1.57e-16,40;UBERON:0002020,4.33e-16,34;UBERON:0002780,7.93e-16,39;UBERON:0001890,7.93e-16,39;UBERON:0006240,7.93e-16,39;UBERON:0010314,2.95e-14,92;UBERON:0003528,1.31e-13,29;UBERON:0002791,1.31e-13,29;UBERON:0001893,1.31e-13,29;UBERON:0000956,2.13e-09,21;UBERON:0001869,2.13e-09,21;UBERON:0000203,2.13e-09,21;UBERON:0002021,1.38e-07,10;UBERON:0000411,1.38e-07,10;UBERON:0001950,1.38e-07,10;UBERON:0002619,2.37e-07,17|phase1_expression=27.225304007815,2.09385244583617,1.36499771816861,2.11724947914781,1.00179145989269,8.56184286750638,8.64366770203445,4.13194635013044,1.68946466582,1.17032263160997,7.70480857014772,8.13676021752431,5.47842335779858,3.75907730401689,29.9798785634096,28.3465374345756,34.2785320282792,6.46697438984387,8.08975158273859,7.21462408056651,22.7065584703356,18.9645716793691,22.7243816550874,4.63978026100879,6.19405058881359,1.72269589234506,2.15380998079537,3.44753972297422,3.99049180858385,8.31699428207772,6.43018480900384,27.9413496322238,37.5189520426588,15.8481681015439,23.108129580102,21.4442692512455,22.4586291888606,2.09265815368454,2.3440060335714,6.80580867165938,1.76469446409304,0.683045484958446,2.91306211818692,14.4781340671914,11.7597240214637,13.5824596599644,7.04152209913235,9.15705656797875,4.61340983742391,6.9994763666742,8.25919887589639,11.5002051491977,7.55021727259814,5.07753499407941,7.39406358113421,8.2323019531503,12.3209379173665,5.15672092277442,47.3420518411459,44.4352422588508,57.6786577190623,3.04960078862219,2.66788438833342,0.449949858640699,1.97773272513395,2.1314403448383,2.99600110518405,5.76327457982332,60.6584232004594,52.6523159493594,57.2083894875759,32.5642122220336,32.4676755198872,62.1028352019817,48.4978083352276,54.2339084099912,105.711245759413,67.1635398328087,81.1042495592965,43.7862475264244,46.8416735244337,57.8213841318004,55.8365998002762,63.5921749335798,64.7864570573675,80.1389752488376,79.1586545243012,66.9174010512829,9.23859558664845,11.260162455911,16.5222758559956,6.0229671388697,2.03991400112325,9.71465744948071,4.54843492213368,9.40856462904405,13.3422199125164,12.2709832256202,11.4305842025262,10.9535268098205,25.2109721400258,8.98285341900225,7.64415719119937,42.6640021891999,11.0410430915719,11.9079136773296,9.60496445528088,10.8474685733107,7.76813650941515,13.2113503767694,16.4811060427829,14.9188084372949,19.1410862722529,15.6751546174727,14.4634109776917,16.7136566468468,5.6854842578906,8.96516012903452,14.153768831198,11.6472131962135,12.5879665522424,19.8798853785441,7.45567044872489,74.9518840349561,57.1789509600732,7.66371165625774,11.7418822015802,8.99854096490112,10.4197586199913,106.201563338019,86.0101133299018,67.2250783803825,76.3088765644094,91.5461337242583,63.5831416352254,72.846327117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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:68729 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q6PCX9,uniprot:Q5SX31 | |||
|association_with_transcript=0bp_to_ENSMUST00000041282,NM_197987,uc007ktm.1,uc011ybw.1_5end | |||
|cluster_id=chr11:86940554..86940607,+ | |||
|description=CAGE_peak_1_at_Trim37_5end | |||
|id=chr11:86940554..86940607,+ | |||
|ontology_enrichment_celltype=CL:0000540!2.75e-13!33;CL:0000047!2.75e-13!33;CL:0000031!2.75e-13!33;CL:0000404!2.75e-13!33;CL:0000117!7.18e-13!23;CL:0000337!7.18e-13!23;CL:0000393!1.52e-09!39;CL:0000211!1.52e-09!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.75e-13,33;CL:0000047,2.75e-13,33;CL:0000031,2.75e-13,33;CL:0000404,2.75e-13,33;CL:0000117,7.18e-13,23;CL:0000337,7.18e-13,23;CL:0000393,1.52e-09,39;CL:0000211,1.52e-09,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.12e-22!73;UBERON:0005743!4.12e-22!73;UBERON:0002346!2.66e-21!71;UBERON:0003075!2.66e-21!71;UBERON:0007284!2.66e-21!71;UBERON:0000033!3.74e-21!63;UBERON:0000073!8.58e-21!75;UBERON:0001016!8.58e-21!75;UBERON:0001049!2.42e-20!52;UBERON:0005068!2.42e-20!52;UBERON:0006241!2.42e-20!52;UBERON:0007135!2.42e-20!52;UBERON:0000955!1.47e-19!50;UBERON:0006238!1.47e-19!50;UBERON:0003056!1.63e-19!49;UBERON:0002616!4.86e-19!49;UBERON:0004121!2.85e-17!102;UBERON:0000924!2.85e-17!102;UBERON:0006601!2.85e-17!102;UBERON:0007811!1.05e-16!86;UBERON:0003080!1.57e-16!40;UBERON:0002020!4.33e-16!34;UBERON:0002780!7.93e-16!39;UBERON:0001890!7.93e-16!39;UBERON:0006240!7.93e-16!39;UBERON:0000153!1.64e-15!94;UBERON:0002791!1.31e-13!29;UBERON:0003528!1.31e-13!29;UBERON:0001893!1.31e-13!29;UBERON:0000956!2.13e-09!21;UBERON:0001869!2.13e-09!21;UBERON:0000203!2.13e-09!21;UBERON:0002021!1.38e-07!10;UBERON:0000411!1.38e-07!10;UBERON:0001950!1.38e-07!10;UBERON:0002619!2.37e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.36e-23,64;UBERON:0003075,1.36e-23,64;UBERON:0007284,1.36e-23,64;UBERON:0001017,4.12e-22,73;UBERON:0000073,1.07e-21,54;UBERON:0001016,8.58e-21,75;UBERON:0001049,2.42e-20,52;UBERON:0005068,2.42e-20,52;UBERON:0006241,2.42e-20,52;UBERON:0007135,2.42e-20,52;UBERON:0010371,9.36e-20,73;UBERON:0003056,1.63e-19,49;UBERON:0004121,1.71e-18,95;UBERON:0000924,1.71e-18,95;UBERON:0006601,1.71e-18,95;UBERON:0000955,1.42e-17,47;UBERON:0006238,1.42e-17,47;UBERON:0002616,4.58e-17,46;UBERON:0003080,1.57e-16,40;UBERON:0002020,4.33e-16,34;UBERON:0002780,7.93e-16,39;UBERON:0001890,7.93e-16,39;UBERON:0006240,7.93e-16,39;UBERON:0010314,2.95e-14,92;UBERON:0003528,1.31e-13,29;UBERON:0002791,1.31e-13,29;UBERON:0001893,1.31e-13,29;UBERON:0000956,2.13e-09,21;UBERON:0001869,2.13e-09,21;UBERON:0000203,2.13e-09,21;UBERON:0002021,1.38e-07,10;UBERON:0000411,1.38e-07,10;UBERON:0001950,1.38e-07,10;UBERON:0002619,2.37e-07,17 | |||
|phase1_expression=27.225304007815,2.09385244583617,1.36499771816861,2.11724947914781,1.00179145989269,8.56184286750638,8.64366770203445,4.13194635013044,1.68946466582,1.17032263160997,7.70480857014772,8.13676021752431,5.47842335779858,3.75907730401689,29.9798785634096,28.3465374345756,34.2785320282792,6.46697438984387,8.08975158273859,7.21462408056651,22.7065584703356,18.9645716793691,22.7243816550874,4.63978026100879,6.19405058881359,1.72269589234506,2.15380998079537,3.44753972297422,3.99049180858385,8.31699428207772,6.43018480900384,27.9413496322238,37.5189520426588,15.8481681015439,23.108129580102,21.4442692512455,22.4586291888606,2.09265815368454,2.3440060335714,6.80580867165938,1.76469446409304,0.683045484958446,2.91306211818692,14.4781340671914,11.7597240214637,13.5824596599644,7.04152209913235,9.15705656797875,4.61340983742391,6.9994763666742,8.25919887589639,11.5002051491977,7.55021727259814,5.07753499407941,7.39406358113421,8.2323019531503,12.3209379173665,5.15672092277442,47.3420518411459,44.4352422588508,57.6786577190623,3.04960078862219,2.66788438833342,0.449949858640699,1.97773272513395,2.1314403448383,2.99600110518405,5.76327457982332,60.6584232004594,52.6523159493594,57.2083894875759,32.5642122220336,32.4676755198872,62.1028352019817,48.4978083352276,54.2339084099912,105.711245759413,67.1635398328087,81.1042495592965,43.7862475264244,46.8416735244337,57.8213841318004,55.8365998002762,63.5921749335798,64.7864570573675,80.1389752488376,79.1586545243012,66.9174010512829,9.23859558664845,11.260162455911,16.5222758559956,6.0229671388697,2.03991400112325,9.71465744948071,4.54843492213368,9.40856462904405,13.3422199125164,12.2709832256202,11.4305842025262,10.9535268098205,25.2109721400258,8.98285341900225,7.64415719119937,42.6640021891999,11.0410430915719,11.9079136773296,9.60496445528088,10.8474685733107,7.76813650941515,13.2113503767694,16.4811060427829,14.9188084372949,19.1410862722529,15.6751546174727,14.4634109776917,16.7136566468468,5.6854842578906,8.96516012903452,14.153768831198,11.6472131962135,12.5879665522424,19.8798853785441,7.45567044872489,74.9518840349561,57.1789509600732,7.66371165625774,11.7418822015802,8.99854096490112,10.4197586199913,106.201563338019,86.0101133299018,67.2250783803825,76.3088765644094,91.5461337242583,63.5831416352254,72.8463271174232,14.9703864859965,18.5366386209039,14.1524744722858,13.8891624885073,36.1734831436316,40.0029661714243,38.3532336485394,35.1142225557216,38.3045490221976,40.099594449158,43.6650036448336,39.8403190938084,23.4969112296798,18.1541836961106,19.1786725338704,14.0285268753648,19.7413546950174,10.0993128291428,18.5203922767149,18.1121182804829,9.83098462238529,13.1247432628505,7.38825098428541,17.6056906655177,18.2930326785255,18.3663302690235,14.4414288706978,19.479658942993,16.8151153047242,16.7424440220294,13.9502168727802,12.9609530027558,14.6458266422998,11.3275550214576,8.35008738322314,7.16379938384128,9.44065495751518,9.12603647570528,45.8432087869797,58.5527244438128,1.32167513193519,11.6358249331959,19.4092307987063,21.3657738111603,20.6187938115349,17.7481501668541,14.0098167622268,14.6473732106671,10.9141684155238,8.89374355509659,13.8234364840148,9.74886713001639,11.307917052909,10.7858329038507,9.51007419448655,6.96994456390285,14.7940962743404,23.0781995471652,15.7790829942313,24.8454619971283,20.9468686141036,21.0407459670956,20.4254014911351,21.5510816050219,17.7408562460754,15.1778511623815,6.81841042300442,32.3679505089222,34.2012651496973,33.2795926329584,34.283360514657,26.047133253261,18.5876871800436,17.8371605219503,15.7271169971784,15.1008777253445,10.0637744569148,13.0249331683976,8.11297950097858,5.80931419278357,6.63770430031075,5.78932225636041,11.8242041706627,19.5176154123599,21.5113768903474,18.1627241779451,20.8874320976767,20.4357634079015,15.4728366575909,16.0009591243395,17.8127712839996,12.1805579306826,16.4238411717212,13.6006551214063,8.28887912956299,11.4272756279394,7.53956419696361,1.63171705145613,4.42587845717133,9.10591262805617,83.4863067936518,79.3523118229215,13.114795630134,4.03953483526997,17.6684602873104,21.0836921920185,28.2204651029967,25.091723785018,21.8342700600746,23.7784285862619,19.8357243820698,26.5952830699294,25.2984177885775,51.7327319439109,20.0135520143659,12.9987890677096,13.1938437076397,17.1568927891437,11.9470624505967,21.1219153454834,19.9533547596736,16.2200368590072,7.67784921490009,14.7568871013085,10.0787034335606,15.6319503675327,17.4683715408513,12.6414703174326,8.4334886859999,11.3449097573006,30.2991249120871,32.5910580196672,18.2395744133684,36.2229589203391,36.0000674293815,28.7173796339334,33.2389021616284,13.0919928119278,7.74416636610244,5.50763384245932,5.29268155331909,12.2015827176695,10.0107944551461,15.6210475563924,10.0272768962635,16.085808175016,7.86998258900597,80.4745810725612,23.238439788508,17.1301100409475,22.2233432843654,36.7318491159147,33.3533915639301,29.9699406900545,13.5982743995084,14.6949024939841,14.6491972232689,7.63736494412091,16.7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| |||
|short_description=p1@Trim37 | |||
}} |
Revision as of 06:35, 4 August 2015
Short description: | p1@Trim37 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Trim37_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000041282, NM_197987, uc007ktm.1, uc011ybw.1_5end |
EntrezGene: | 68729 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.75e-13 | 33 |
neuronal stem cell | 2.75e-13 | 33 |
neuroblast | 2.75e-13 | 33 |
electrically signaling cell | 2.75e-13 | 33 |
CNS neuron (sensu Vertebrata) | 7.18e-13 | 23 |
neuroblast (sensu Vertebrata) | 7.18e-13 | 23 |
electrically responsive cell | 1.52e-09 | 39 |
electrically active cell | 1.52e-09 | 39 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.36e-23 | 64 |
neural plate | 1.36e-23 | 64 |
presumptive neural plate | 1.36e-23 | 64 |
central nervous system | 4.12e-22 | 73 |
regional part of nervous system | 1.07e-21 | 54 |
nervous system | 8.58e-21 | 75 |
neural tube | 2.42e-20 | 52 |
neural rod | 2.42e-20 | 52 |
future spinal cord | 2.42e-20 | 52 |
neural keel | 2.42e-20 | 52 |
ecto-epithelium | 9.36e-20 | 73 |
pre-chordal neural plate | 1.63e-19 | 49 |
ectoderm-derived structure | 1.71e-18 | 95 |
ectoderm | 1.71e-18 | 95 |
presumptive ectoderm | 1.71e-18 | 95 |
brain | 1.42e-17 | 47 |
future brain | 1.42e-17 | 47 |
regional part of brain | 4.58e-17 | 46 |
anterior neural tube | 1.57e-16 | 40 |
gray matter | 4.33e-16 | 34 |
regional part of forebrain | 7.93e-16 | 39 |
forebrain | 7.93e-16 | 39 |
future forebrain | 7.93e-16 | 39 |
structure with developmental contribution from neural crest | 2.95e-14 | 92 |
brain grey matter | 1.31e-13 | 29 |
regional part of telencephalon | 1.31e-13 | 29 |
telencephalon | 1.31e-13 | 29 |
cerebral cortex | 2.13e-09 | 21 |
cerebral hemisphere | 2.13e-09 | 21 |
pallium | 2.13e-09 | 21 |
occipital lobe | 1.38e-07 | 10 |
visual cortex | 1.38e-07 | 10 |
neocortex | 1.38e-07 | 10 |
regional part of cerebral cortex | 2.37e-07 | 17 |