FFCP PHASE1:Hg19::chr4:41216580..41216594,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=323 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=582 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000506999,ENST00000511572_5end | |||
|coexpression_cluster_id=C2790 | |||
|description=CAGE_peak_5_at_APBB2_5end | |||
|id=chr4:41216580..41216594,- | |||
|ontology_enrichment_celltype=CL:0000222!2.38e-14!119;CL:0000055!2.01e-10!180;CL:0000680!2.60e-09!57;CL:0000056!2.60e-09!57;CL:0000355!2.60e-09!57;CL:0000220!1.18e-08!246;CL:0002321!2.05e-08!248;CL:0000187!2.13e-08!54;CL:0000183!2.02e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000359;8.01e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.16e-14,121;CL:0000680,2.05e-09,58;CL:0000056,2.05e-09,58;CL:0000355,2.05e-09,58;CL:0000187,2.17e-08,55;CL:0000359,2.81e-07,32;CL:0000192,3.32e-07,43;CL:0000514,3.32e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!8.63e-25!312;UBERON:0000483!1.94e-24!309;UBERON:0000477!9.28e-24!286;UBERON:0000475!2.69e-21!365;UBERON:0004111!1.23e-19!241;UBERON:0000025!1.18e-18!194;UBERON:0000481!2.34e-18!347;UBERON:0003075!6.95e-17!86;UBERON:0007284!6.95e-17!86;UBERON:0000033!2.65e-15!123;UBERON:0000153!7.70e-15!129;UBERON:0007811!7.70e-15!129;UBERON:0002346!9.29e-15!90;UBERON:0001049!2.78e-14!57;UBERON:0005068!2.78e-14!57;UBERON:0006241!2.78e-14!57;UBERON:0007135!2.78e-14!57;UBERON:0000955!6.84e-14!69;UBERON:0006238!6.84e-14!69;UBERON:0002049!7.12e-14!79;UBERON:0007798!7.12e-14!79;UBERON:0002616!8.01e-14!59;UBERON:0000468!3.08e-13!659;UBERON:0005743!7.02e-13!86;UBERON:0001017!1.38e-12!82;UBERON:0004121!1.08e-11!169;UBERON:0000073!2.23e-11!94;UBERON:0001016!2.23e-11!94;UBERON:0004872!2.92e-11!84;UBERON:0003056!3.30e-11!61;UBERON:0000490!6.54e-11!138;UBERON:0000055!8.18e-11!69;UBERON:0001981!9.03e-11!60;UBERON:0007500!9.03e-11!60;UBERON:0004537!9.03e-11!60;UBERON:0006965!9.03e-11!60;UBERON:0003080!1.15e-10!42;UBERON:0000924!1.49e-10!173;UBERON:0006601!1.49e-10!173;UBERON:0000914!1.65e-10!83;UBERON:0002329!1.65e-10!83;UBERON:0003077!1.65e-10!83;UBERON:0003059!1.65e-10!83;UBERON:0007282!1.65e-10!83;UBERON:0009618!1.65e-10!83;UBERON:0007285!1.65e-10!83;UBERON:0000467!1.82e-10!625;UBERON:0002100!2.16e-10!216;UBERON:0002780!2.31e-10!41;UBERON:0001890!2.31e-10!41;UBERON:0006240!2.31e-10!41;UBERON:0000480!3.14e-10!626;UBERON:0000922!3.50e-10!612;UBERON:0001893!4.15e-10!34;UBERON:0002050!4.15e-10!605;UBERON:0005423!4.15e-10!605;UBERON:0002020!4.59e-10!34;UBERON:0003528!4.59e-10!34;UBERON:0000923!6.26e-10!604;UBERON:0005291!6.26e-10!604;UBERON:0006598!6.26e-10!604;UBERON:0002532!6.26e-10!604;UBERON:0002791!1.35e-09!33;UBERON:0004535!1.71e-09!110;UBERON:0001637!2.26e-09!42;UBERON:0003509!2.26e-09!42;UBERON:0004572!2.26e-09!42;UBERON:0001009!2.49e-09!113;UBERON:0001869!6.17e-09!32;UBERON:0005256!1.23e-08!143;UBERON:0003914!1.46e-08!118;UBERON:0004290!1.90e-08!70;UBERON:0001134!3.97e-08!61;UBERON:0002036!3.97e-08!61;UBERON:0003082!3.97e-08!61;UBERON:0007023!5.67e-08!115;UBERON:0002385!6.27e-08!63;UBERON:0001015!6.27e-08!63;UBERON:0000383!6.27e-08!63;UBERON:0000064!9.53e-08!219;UBERON:0002619!2.28e-07!22;UBERON:0001950!4.04e-07!20;UBERON:0000486!8.26e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;1.06e-08;34!UBERON:0003528;1.98e-08;34!UBERON:0002020;1.98e-08;34!UBERON:0000073;4.23e-08;53!UBERON:0002616;4.23e-08;53!UBERON:0002791;5.40e-08;32!UBERON:0001637;5.75e-08;42!UBERON:0003509;5.75e-08;42!UBERON:0004572;5.75e-08;42!UBERON:0001869;6.60e-08;32!UBERON:0001950;7.29e-08;20!UBERON:0002780;7.61e-08;41!UBERON:0001890;7.61e-08;41!UBERON:0002619;1.07e-07;22!UBERON:0000947;2.88e-07;21!UBERON:0010191;2.88e-07;21!UBERON:0004573;9.67e-07;33!UBERON:0004571;9.67e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.90e-20,132;UBERON:0000119,5.69e-20,309;UBERON:0000483,1.30e-19,306;UBERON:0000025,2.36e-16,192;UBERON:0003075,2.18e-15,82;UBERON:0007284,2.18e-15,82;UBERON:0004111,6.33e-15,240;UBERON:0002049,9.07e-15,78;UBERON:0007798,9.07e-15,78;UBERON:0001049,3.59e-14,56;UBERON:0005068,3.59e-14,56;UBERON:0006241,3.59e-14,56;UBERON:0007135,3.59e-14,56;UBERON:0002346,1.39e-13,86;UBERON:0010371,7.04e-13,104;UBERON:0000073,1.28e-12,53;UBERON:0002616,1.28e-12,53;UBERON:0000955,5.21e-12,68;UBERON:0006238,5.21e-12,68;UBERON:0004872,8.42e-12,83;UBERON:0000055,1.13e-11,68;UBERON:0007500,1.42e-11,59;UBERON:0001981,1.42e-11,59;UBERON:0004537,1.42e-11,59;UBERON:0006965,1.42e-11,59;UBERON:0003056,3.43e-11,61;UBERON:0000490,6.69e-11,148;UBERON:0004535,6.96e-11,109;UBERON:0001017,1.41e-10,81;UBERON:0001637,1.67e-10,42;UBERON:0003509,1.67e-10,42;UBERON:0004572,1.67e-10,42;UBERON:0001009,2.01e-10,112;UBERON:0002780,3.31e-10,41;UBERON:0001890,3.31e-10,41;UBERON:0003080,3.31e-10,41;UBERON:0006240,3.31e-10,41;UBERON:0001893,3.68e-10,34;UBERON:0003528,4.12e-10,34;UBERON:0002020,4.12e-10,34;UBERON:0001016,5.97e-09,89;UBERON:0002791,6.33e-09,32;UBERON:0001869,7.67e-09,32;UBERON:0003077,1.36e-08,72;UBERON:0007285,1.36e-08,72;UBERON:0002329,2.78e-08,71;UBERON:0003059,2.78e-08,71;UBERON:0007282,2.78e-08,71;UBERON:0004290,2.78e-08,71;UBERON:0009618,2.78e-08,71;UBERON:0007524,2.94e-08,73;UBERON:0001134,3.20e-08,62;UBERON:0002036,3.20e-08,62;UBERON:0003082,3.20e-08,62;UBERON:0002385,6.75e-08,64;UBERON:0001015,6.75e-08,64;UBERON:0000383,6.75e-08,64;UBERON:0001950,7.15e-08,20;UBERON:0002619,9.96e-08,22;UBERON:0007023,1.25e-07,114;UBERON:0000947,1.32e-07,21;UBERON:0010191,1.32e-07,21;UBERON:0003914,2.13e-07,117;UBERON:0004573,3.16e-07,33;UBERON:0004571,3.16e-07,33;UBERON:0007503,6.45e-07,78;UBERON:0004121,7.33e-07,171;UBERON:0000924,7.33e-07,171;UBERON:0006601,7.33e-07,171 | |||
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| |||
|short_description=p5@APBB2 | |||
}} |
Revision as of 00:50, 22 January 2014
Short description: | p5@APBB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_APBB2_5end |
Coexpression cluster: | C2790_anaplastic_mesothelioma_corpus_optic_substantia_thalamus_granulosa |
Association with transcript: | 0bp_to_ENST00000506999, ENST00000511572_5end |
EntrezGene: | APBB2 |
HGNC: | 582 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.16e-14 | 121 |
muscle precursor cell | 2.05e-09 | 58 |
myoblast | 2.05e-09 | 58 |
multi-potent skeletal muscle stem cell | 2.05e-09 | 58 |
muscle cell | 2.17e-08 | 55 |
vascular associated smooth muscle cell | 2.81e-07 | 32 |
smooth muscle cell | 3.32e-07 | 43 |
smooth muscle myoblast | 3.32e-07 | 43 |