FFCP PHASE1:Hg19::chr5:125707019..125707032,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=65983 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24911 | |||
|TSSclassifier=strong | |||
|UniProt=D6REP5 | |||
|association_with_transcript=14bp_to_ENST00000506445_5end | |||
|coexpression_cluster_id=C4458 | |||
|description=CAGE_peak_16_at_GRAMD3_5end | |||
|id=chr5:125707019..125707032,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.93e-18!254;CL:0000223!2.57e-11!59;CL:1000497!1.14e-10!18;CL:0002518!1.14e-10!18;CL:1000507!2.76e-08!12;CL:1000494!2.76e-08!12;CL:1000449!1.35e-07!16;CL:0002681!2.62e-07!13;CL:0002584!2.62e-07!13;CL:0000239!3.26e-07!3;CL:1000615!3.26e-07!3;CL:0002306!3.26e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000313;7.45e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000313,9.10e-08,1 | |||
|ontology_enrichment_development_v019=UBERON:0003918;1.08e-10;10!UBERON:0007687;1.08e-10;10 | |||
|ontology_enrichment_disease=DOID:305!7.46e-26!106;DOID:0050687!3.31e-19!143;DOID:299!3.26e-16!25;DOID:162!1.31e-07!235;DOID:14566!3.12e-07!239 | |||
|ontology_enrichment_disease_v019=DOID:4468;7.87e-15;2!DOID:4929;5.09e-14;2!DOID:299;4.06e-12;25!DOID:2152;7.45e-08;1!DOID:6193;1.44e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,7.88e-15,2;DOID:4929,3.67e-14,2;DOID:299,3.63e-12,25;DOID:305,8.07e-11,106;DOID:0050687,2.14e-08,143;DOID:2152,9.10e-08,1;DOID:6193,1.99e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.10e-24!169;UBERON:0000925!1.10e-24!169;UBERON:0006595!1.10e-24!169;UBERON:0004921!1.11e-23!129;UBERON:0004185!1.11e-23!129;UBERON:0006554!1.56e-22!44;UBERON:0001008!7.12e-22!45;UBERON:0001007!8.52e-21!155;UBERON:0001555!8.52e-21!155;UBERON:0007026!8.52e-21!155;UBERON:0001737!1.35e-18!9;UBERON:0000077!5.84e-18!130;UBERON:0005172!1.91e-16!55;UBERON:0005173!1.91e-16!55;UBERON:0000058!9.17e-16!26;UBERON:0002417!3.62e-14!61;UBERON:0000916!3.62e-14!61;UBERON:0003104!3.83e-14!238;UBERON:0009142!3.83e-14!238;UBERON:0005911!1.56e-13!82;UBERON:0002113!3.10e-13!27;UBERON:0003918!3.10e-13!27;UBERON:0005095!3.10e-13!27;UBERON:0007687!3.10e-13!27;UBERON:0005177!1.36e-12!107;UBERON:0003064!1.40e-12!37;UBERON:0000489!3.23e-12!32;UBERON:0005409!5.44e-12!35;UBERON:0003929!9.47e-12!54;UBERON:0000466!1.24e-11!126;UBERON:0009497!1.82e-11!25;UBERON:0000015!1.82e-11!25;UBERON:0002423!1.82e-11!25;UBERON:0006235!1.82e-11!25;UBERON:0004161!1.82e-11!25;UBERON:0001041!4.09e-11!98;UBERON:0000160!6.88e-11!27;UBERON:0002294!8.95e-11!7;UBERON:0001173!8.95e-11!7;UBERON:0004912!8.95e-11!7;UBERON:0000080!2.42e-10!18;UBERON:0002120!2.42e-10!18;UBERON:0004875!2.42e-10!18;UBERON:0005721!2.42e-10!18;UBERON:0005754!2.42e-10!18;UBERON:0007297!2.42e-10!18;UBERON:0000481!9.40e-10!347;UBERON:0009856!2.10e-09!26;UBERON:0004876!4.36e-09!20;UBERON:0009854!4.58e-09!23;UBERON:0001046!5.47e-09!19;UBERON:0006555!6.32e-09!17;UBERON:0005103!6.32e-09!17;UBERON:0000083!6.32e-09!17;UBERON:0009201!6.32e-09!17;UBERON:0004819!6.32e-09!17;UBERON:0006553!6.32e-09!17;UBERON:0003074!6.32e-09!17;UBERON:0003060!6.32e-09!17;UBERON:0009569!7.38e-09!113;UBERON:0008947!9.39e-09!38;UBERON:0003258!9.39e-09!38;UBERON:0003887!1.50e-08!21;UBERON:0009773!2.76e-08!12;UBERON:0001231!2.76e-08!12;UBERON:0004810!2.76e-08!12;UBERON:0003886!3.11e-08!63;UBERON:0007499!3.27e-08!25;UBERON:0000065!3.43e-08!53;UBERON:0003937!7.38e-08!12;UBERON:0005399!7.38e-08!12;UBERON:0008835!7.67e-08!22;UBERON:0003894!7.67e-08!22;UBERON:0001557!8.52e-08!19;UBERON:0003101!1.10e-07!22;UBERON:0000079!1.10e-07!22;UBERON:0004211!1.35e-07!16;UBERON:0001285!1.35e-07!16;UBERON:0007684!1.35e-07!16;UBERON:0003220!1.35e-07!16;UBERON:0004208!1.35e-07!16;UBERON:0006947!2.21e-07!3;UBERON:0004054!2.21e-07!3;UBERON:0001225!2.62e-07!13;UBERON:0008987!2.62e-07!13;UBERON:0006853!3.26e-07!3;UBERON:0007685!3.26e-07!3;UBERON:0004134!3.26e-07!3;UBERON:0005156!4.03e-07!59;UBERON:0000990!4.03e-07!59;UBERON:0002553!6.09e-07!70;UBERON:0002110!7.76e-07!3;UBERON:0006242!7.76e-07!3;UBERON:0000059!9.61e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0002108;9.27e-22;4!UBERON:0000160;3.42e-17;17!UBERON:0005409;2.85e-13;22!UBERON:0000058;2.12e-10;10!UBERON:0006554;6.13e-10;30!UBERON:0001008;6.13e-10;30!UBERON:0002114;6.54e-10;2!UBERON:0002113;2.06e-09;24!UBERON:0011143;2.06e-09;24!UBERON:0004921;3.53e-08;33!UBERON:0004911;7.45e-08;1!UBERON:0004913;7.45e-08;1!UBERON:0003703;7.45e-08;1!UBERON:0001174;7.45e-08;1!UBERON:0004914;7.45e-08;1!UBERON:0000489;1.08e-07;29!UBERON:0001000;1.44e-07;1!UBERON:0005352;1.44e-07;1!UBERON:0002394;1.93e-07;4!UBERON:0003928;1.93e-07;4!UBERON:0001155;4.95e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002108,1.09e-21,4;UBERON:0000160,2.99e-17,17;UBERON:0005409,1.11e-11,25;UBERON:0002114,6.27e-10,2;UBERON:0006554,7.99e-10,47;UBERON:0001008,1.37e-09,48;UBERON:0002113,1.21e-08,26;UBERON:0003918,1.21e-08,26;UBERON:0011143,1.21e-08,26;UBERON:0005095,1.21e-08,26;UBERON:0007687,1.21e-08,26;UBERON:0004921,6.65e-08,118;UBERON:0004913,6.97e-08,1;UBERON:0003703,6.97e-08,1;UBERON:0001174,6.97e-08,1;UBERON:0004914,6.97e-08,1;UBERON:0004911,9.10e-08,1;UBERON:0001000,1.87e-07,1;UBERON:0005352,1.87e-07,1;UBERON:0000489,3.69e-07,31;UBERON:0001155,4.14e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164201178899891,0.393553906568396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.946454400318751,1.51726221070292,1.92808823906786,0.882351781859152,0.871517776369625,0.71181185733329,0.404493924480493,0.784885860501384,0.38474715694639,0,0,0,0,1.26755034821831,0,0.590789906681404,0,0.983907508344908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,1.40354529212299,0.184161977871793,0,0,0,0,3.23464415838542,0,0,3.0609972378934,0,0,0.431831832204279,0,0.541892875087706,0.501689773854853,0.509752546090077,0.831076008928724,0.895499018888713,0,0,0,0,0,0.515205058238611,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661139661443912,0.384380134730212,0.638063562472921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.753150406214233,2.15252686335615,0,0.443430153536676,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49712432326576,0,0,0,1.42068073403207,0,0,0,0,0,0,0,0,0,0.828851746593443,2.01546198283421,0,0,0,2.15684042753584,0.358042349351218,0,0.394573622547734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.21996129056054,4.89698424477443,0.282706142867882,0,1.99052386215701,2.29989667708682,3.66618086960175,0,0,0,0,0,0,0,0,0.242780379534093,1.18375320854817,1.20990716048664,0,0,0,0,0,0,0,0,3.69992409838731,0,0,0,0,0.698906672968121,1.0319161948297,0,0,0,0,0.264768380074501,0,0,0,0,0.586654148204409,0.881747022766871,0.213452994739353,0,0.432271251462318,0,0.171594997861965,0.288109595976299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393915911536118,0.329663433524666,0.202210631562555,0.984274815147488,0,0,0,0,0,0,0,0,0,0,3.78267395036151,1.41627387964495,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879313402068495,0,0,0,0.342173675768659,0,0.320362237703084,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0,0,0.245772908753719,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,2.21784129325568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.71845834033127,0.556157009460346,0.941917114206168,0,0.280272163313789,0,2.15927591218621,3.34426181520935,0,0,0,0,0,0,0,0,0,0,0,0.846774100381858,0,0.31020638566432,0.955538938977433,2.12525320415805,0.294450700845729,0.365753774946808,0,0,0,0,0,0,0,0,0,0,3.24131464053368,3.0598338470554,0,0.490296643507811,0,0,0,0,0,0,0,0,0,0,0.0802413666891683,0.730336388246517,0,0,0,0,0,4.2322147241232,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143444410785353,0,0,0,0,2.96423166951737,0,0.366724332548599,0,0,0,0 | |||
|short_description=p16@GRAMD3 | |||
}} |
Revision as of 07:09, 22 January 2014
Short description: | p16@GRAMD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_GRAMD3_5end |
Coexpression cluster: | C4458_small_renal_kidney_Hepatocyte_clear_colon_argyrophil |
Association with transcript: | 14bp_to_ENST00000506445_5end |
EntrezGene: | GRAMD3 |
HGNC: | 24911 |
UniProt: | D6REP5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
serous secreting cell | 9.10e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
small intestine | 1.09e-21 | 4 |
intestine | 2.99e-17 | 17 |
gastrointestinal system | 1.11e-11 | 25 |
duodenum | 6.27e-10 | 2 |
urinary system structure | 7.99e-10 | 47 |
renal system | 1.37e-09 | 48 |
kidney | 1.21e-08 | 26 |
kidney mesenchyme | 1.21e-08 | 26 |
upper urinary tract | 1.21e-08 | 26 |
kidney rudiment | 1.21e-08 | 26 |
kidney field | 1.21e-08 | 26 |
subdivision of digestive tract | 6.65e-08 | 118 |
hepatopancreatic ampulla | 6.97e-08 | 1 |
extrahepatic bile duct | 6.97e-08 | 1 |
common bile duct | 6.97e-08 | 1 |
duodenal papilla | 6.97e-08 | 1 |
epithelium of female gonad | 9.10e-08 | 1 |
vas deferens | 1.87e-07 | 1 |
spermatic cord | 1.87e-07 | 1 |
cavitated compound organ | 3.69e-07 | 31 |
colon | 4.14e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 7.88e-15 | 2 |
tubular adenocarcinoma | 3.67e-14 | 2 |
adenocarcinoma | 3.63e-12 | 25 |
carcinoma | 8.07e-11 | 106 |
cell type cancer | 2.14e-08 | 143 |
ovary epithelial cancer | 9.10e-08 | 1 |
epithelioid sarcoma | 1.99e-07 | 1 |