FFCP PHASE1:Mm9::chr3:108218929..108218968,-: Difference between revisions
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{{FFCP|EntrezGene=53883|HGNC=|MCL_coexpression_id=1|UniProt=A2AEE7|association_with_transcript=-459bp_to_ENSMUST00000090558_5end|description=CAGE_peak_1_at_Celsr2_5end|id=chr3:108218929..108218968,-|ontology_enrichment_celltype=CL:0000221!6.76e-17!44;CL:0000133!6.76e-17!44;CL:0002319!1.51e-16!43;CL:0000540!1.79e-14!33;CL:0000047!1.79e-14!33;CL:0000031!1.79e-14!33;CL:0000404!1.79e-14!33;CL:0000117!1.57e-12!23;CL:0000337!1.57e-12!23;CL:0000055!3.54e-10!50;CL:0000393!1.63e-08!39;CL:0000211!1.63e-08!39|ontology_enrichment_celltype_v019_2=CL:0000221,4.06e-17,44;CL:0000133,4.06e-17,44;CL:0002319,9.19e-17,43;CL:0000540,1.16e-14,33;CL:0000047,1.16e-14,33;CL:0000031,1.16e-14,33;CL:0000404,1.16e-14,33;CL:0000117,1.09e-12,23;CL:0000337,1.09e-12,23;CL:0000393,4.25e-09,39;CL:0000211,4.25e-09,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!2.30e-36!102;UBERON:0000924!2.30e-36!102;UBERON:0006601!2.30e-36!102;UBERON:0001017!3.05e-33!73;UBERON:0005743!3.05e-33!73;UBERON:0000073!3.40e-32!75;UBERON:0001016!3.40e-32!75;UBERON:0000033!1.99e-26!63;UBERON:0002346!2.22e-24!71;UBERON:0003075!2.22e-24!71;UBERON:0007284!2.22e-24!71;UBERON:0001049!1.17e-23!52;UBERON:0005068!1.17e-23!52;UBERON:0006241!1.17e-23!52;UBERON:0007135!1.17e-23!52;UBERON:0000955!4.89e-23!50;UBERON:0006238!4.89e-23!50;UBERON:0002616!1.71e-22!49;UBERON:0003056!8.55e-21!49;UBERON:0002020!2.20e-19!34;UBERON:0003080!2.36e-18!40;UBERON:0002780!1.09e-17!39;UBERON:0001890!1.09e-17!39;UBERON:0006240!1.09e-17!39;UBERON:0002791!4.40e-17!29;UBERON:0003528!4.40e-17!29;UBERON:0001893!4.40e-17!29;UBERON:0007811!3.65e-15!86;UBERON:0000153!1.33e-14!94;UBERON:0000956!4.74e-13!21;UBERON:0001869!4.74e-13!21;UBERON:0000203!4.74e-13!21;UBERON:0002619!1.26e-10!17;UBERON:0000468!4.43e-09!333;UBERON:0002021!1.18e-07!10;UBERON:0000411!1.18e-07!10;UBERON:0001950!1.18e-07!10;UBERON:0000475!3.28e-07!200;UBERON:0000922!6.73e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.37e-39,95;UBERON:0000924,1.37e-39,95;UBERON:0006601,1.37e-39,95;UBERON:0001017,1.06e-33,73;UBERON:0001016,1.22e-32,75;UBERON:0010371,1.65e-31,73;UBERON:0002346,1.67e-27,64;UBERON:0003075,1.67e-27,64;UBERON:0007284,1.67e-27,64;UBERON:0000073,2.27e-25,54;UBERON:0001049,5.63e-24,52;UBERON:0005068,5.63e-24,52;UBERON:0006241,5.63e-24,52;UBERON:0007135,5.63e-24,52;UBERON:0000955,2.39e-21,47;UBERON:0006238,2.39e-21,47;UBERON:0003056,4.52e-21,49;UBERON:0002616,8.31e-21,46;UBERON:0002020,1.22e-19,34;UBERON:0003080,1.35e-18,40;UBERON:0002780,6.36e-18,39;UBERON:0001890,6.36e-18,39;UBERON:0006240,6.36e-18,39;UBERON:0003528,2.63e-17,29;UBERON:0002791,2.63e-17,29;UBERON:0001893,2.63e-17,29;UBERON:0010314,1.48e-15,92;UBERON:0000956,3.24e-13,21;UBERON:0001869,3.24e-13,21;UBERON:0000203,3.24e-13,21;UBERON:0002619,9.34e-11,17;UBERON:0002021,9.64e-08,10;UBERON:0000411,9.64e-08,10;UBERON:0001950,9.64e-08,10;UBERON:0000479,8.64e-07,349|phase1_expression=9.92922852049723,0,0,0,0,1.6787927191189,1.63528848416868,0.903863264091034,2.111830832275,2.57470978954193,0.513653904676515,0.398860794976682,1.02720437958723,0.874204024189974,0.999329285446988,1.21485160433896,0,0.315462165358238,0.548457734422955,0,20.3253463461057,1.09220046320974,0,0.159992422793407,0.45881856213434,0.57423196411502,0.86152399231815,0.215471232685889,0,0.252030129759931,0.665191531965914,0,0,0,2.3108129580102,2.82598897109437,4.28755648150975,0,0,0,0,0,0,0,0.304130793658544,0,3.12956537739216,69.7680500417429,30.9757517655605,35.5806715305939,14.4186014274123,54.6259744586892,0.671130424230945,0.725362142011344,3.02484419228218,0,0,0,44.3073049282519,46.5512061759389,46.9035238594573,4.40497891689872,3.55717918444456,0,0,0.7104801149461,36.8508135937638,71.0803864844876,52.9853918896321,50.4922209360523,53.6328651446024,46.56111045782,30.4798586513227,35.6448225715516,34.9835969216563,30.3342199581307,52.8556228797066,58.7361755191863,51.3045821075853,41.0166354840903,34.4908416381084,32.2966289745191,49.6945738222458,43.895483582471,45.5338778374894,32.9984015730508,32.7454865837937,41.7534758648673,1.06016670666458,6.19686792875641,0.579728977403356,0.860423876981386,0,0,0.649776417447669,0,4.91555470461132,0,0,0,23.5208511027056,0,0,0,4.97929394325792,5.32055717497707,3.53867111510348,5.1382745873577,0.517875767294343,3.56261133755579,4.68410382268567,4.56698217468212,3.92046345335299,4.06951129492081,2.58695155698551,2.26199864393416,0,3.61498392299779,0,0.647067399789637,2.42925670306433,0,3.72783522436244,29.8636412951778,39.7948742945565,2.81002760729451,0.11981512450592,0,0,57.2200242526423,57.6450759551469,41.8428992535839,62.7505795894118,70.3217507658409,43.8432774020672,52.5661692339535,6.21220119486929,4.97627882440372,8.08712826987759,20.412860020988,9.62891277924007,13.5642241615749,17.8261508507296,17.6324636867787,30.9566071138542,19.3451717630123,24.7372552837684,17.3331258395141,2.37124792226126,2.83659120251729,5.10258260075452,6.57587197282724,8.34141747676794,17.4126083261083,1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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:53883 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:A2AEE7 | |||
|association_with_transcript=-459bp_to_ENSMUST00000090558_5end | |||
|cluster_id=chr3:108218929..108218968,- | |||
|description=CAGE_peak_1_at_Celsr2_5end | |||
|id=chr3:108218929..108218968,- | |||
|ontology_enrichment_celltype=CL:0000221!6.76e-17!44;CL:0000133!6.76e-17!44;CL:0002319!1.51e-16!43;CL:0000540!1.79e-14!33;CL:0000047!1.79e-14!33;CL:0000031!1.79e-14!33;CL:0000404!1.79e-14!33;CL:0000117!1.57e-12!23;CL:0000337!1.57e-12!23;CL:0000055!3.54e-10!50;CL:0000393!1.63e-08!39;CL:0000211!1.63e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,4.06e-17,44;CL:0000133,4.06e-17,44;CL:0002319,9.19e-17,43;CL:0000540,1.16e-14,33;CL:0000047,1.16e-14,33;CL:0000031,1.16e-14,33;CL:0000404,1.16e-14,33;CL:0000117,1.09e-12,23;CL:0000337,1.09e-12,23;CL:0000393,4.25e-09,39;CL:0000211,4.25e-09,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!2.30e-36!102;UBERON:0000924!2.30e-36!102;UBERON:0006601!2.30e-36!102;UBERON:0001017!3.05e-33!73;UBERON:0005743!3.05e-33!73;UBERON:0000073!3.40e-32!75;UBERON:0001016!3.40e-32!75;UBERON:0000033!1.99e-26!63;UBERON:0002346!2.22e-24!71;UBERON:0003075!2.22e-24!71;UBERON:0007284!2.22e-24!71;UBERON:0001049!1.17e-23!52;UBERON:0005068!1.17e-23!52;UBERON:0006241!1.17e-23!52;UBERON:0007135!1.17e-23!52;UBERON:0000955!4.89e-23!50;UBERON:0006238!4.89e-23!50;UBERON:0002616!1.71e-22!49;UBERON:0003056!8.55e-21!49;UBERON:0002020!2.20e-19!34;UBERON:0003080!2.36e-18!40;UBERON:0002780!1.09e-17!39;UBERON:0001890!1.09e-17!39;UBERON:0006240!1.09e-17!39;UBERON:0002791!4.40e-17!29;UBERON:0003528!4.40e-17!29;UBERON:0001893!4.40e-17!29;UBERON:0007811!3.65e-15!86;UBERON:0000153!1.33e-14!94;UBERON:0000956!4.74e-13!21;UBERON:0001869!4.74e-13!21;UBERON:0000203!4.74e-13!21;UBERON:0002619!1.26e-10!17;UBERON:0000468!4.43e-09!333;UBERON:0002021!1.18e-07!10;UBERON:0000411!1.18e-07!10;UBERON:0001950!1.18e-07!10;UBERON:0000475!3.28e-07!200;UBERON:0000922!6.73e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.37e-39,95;UBERON:0000924,1.37e-39,95;UBERON:0006601,1.37e-39,95;UBERON:0001017,1.06e-33,73;UBERON:0001016,1.22e-32,75;UBERON:0010371,1.65e-31,73;UBERON:0002346,1.67e-27,64;UBERON:0003075,1.67e-27,64;UBERON:0007284,1.67e-27,64;UBERON:0000073,2.27e-25,54;UBERON:0001049,5.63e-24,52;UBERON:0005068,5.63e-24,52;UBERON:0006241,5.63e-24,52;UBERON:0007135,5.63e-24,52;UBERON:0000955,2.39e-21,47;UBERON:0006238,2.39e-21,47;UBERON:0003056,4.52e-21,49;UBERON:0002616,8.31e-21,46;UBERON:0002020,1.22e-19,34;UBERON:0003080,1.35e-18,40;UBERON:0002780,6.36e-18,39;UBERON:0001890,6.36e-18,39;UBERON:0006240,6.36e-18,39;UBERON:0003528,2.63e-17,29;UBERON:0002791,2.63e-17,29;UBERON:0001893,2.63e-17,29;UBERON:0010314,1.48e-15,92;UBERON:0000956,3.24e-13,21;UBERON:0001869,3.24e-13,21;UBERON:0000203,3.24e-13,21;UBERON:0002619,9.34e-11,17;UBERON:0002021,9.64e-08,10;UBERON:0000411,9.64e-08,10;UBERON:0001950,9.64e-08,10;UBERON:0000479,8.64e-07,349 | |||
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| |||
|short_description=p1@Celsr2 | |||
}} |
Revision as of 20:56, 5 August 2015
Short description: | p1@Celsr2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Celsr2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -459bp_to_ENSMUST00000090558_5end |
EntrezGene: | 53883 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 4.06e-17 | 44 |
neurectodermal cell | 4.06e-17 | 44 |
neural cell | 9.19e-17 | 43 |
neuron | 1.16e-14 | 33 |
neuronal stem cell | 1.16e-14 | 33 |
neuroblast | 1.16e-14 | 33 |
electrically signaling cell | 1.16e-14 | 33 |
CNS neuron (sensu Vertebrata) | 1.09e-12 | 23 |
neuroblast (sensu Vertebrata) | 1.09e-12 | 23 |
electrically responsive cell | 4.25e-09 | 39 |
electrically active cell | 4.25e-09 | 39 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 1.37e-39 | 95 |
ectoderm | 1.37e-39 | 95 |
presumptive ectoderm | 1.37e-39 | 95 |
central nervous system | 1.06e-33 | 73 |
nervous system | 1.22e-32 | 75 |
ecto-epithelium | 1.65e-31 | 73 |
neurectoderm | 1.67e-27 | 64 |
neural plate | 1.67e-27 | 64 |
presumptive neural plate | 1.67e-27 | 64 |
regional part of nervous system | 2.27e-25 | 54 |
neural tube | 5.63e-24 | 52 |
neural rod | 5.63e-24 | 52 |
future spinal cord | 5.63e-24 | 52 |
neural keel | 5.63e-24 | 52 |
brain | 2.39e-21 | 47 |
future brain | 2.39e-21 | 47 |
pre-chordal neural plate | 4.52e-21 | 49 |
regional part of brain | 8.31e-21 | 46 |
gray matter | 1.22e-19 | 34 |
anterior neural tube | 1.35e-18 | 40 |
regional part of forebrain | 6.36e-18 | 39 |
forebrain | 6.36e-18 | 39 |
future forebrain | 6.36e-18 | 39 |
brain grey matter | 2.63e-17 | 29 |
regional part of telencephalon | 2.63e-17 | 29 |
telencephalon | 2.63e-17 | 29 |
structure with developmental contribution from neural crest | 1.48e-15 | 92 |
cerebral cortex | 3.24e-13 | 21 |
cerebral hemisphere | 3.24e-13 | 21 |
pallium | 3.24e-13 | 21 |
regional part of cerebral cortex | 9.34e-11 | 17 |
occipital lobe | 9.64e-08 | 10 |
visual cortex | 9.64e-08 | 10 |
neocortex | 9.64e-08 | 10 |
tissue | 8.64e-07 | 349 |