FFCP PHASE1:Mm9::chr3:82162089..82162107,+: Difference between revisions
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{{FFCP|EntrezGene=213582|HGNC=|MCL_coexpression_id=1|UniProt=|association_with_transcript=-1bp_to_uc008poz.1_5end|description=CAGE_peak_2_at_Mtap9_5end|id=chr3:82162089..82162107,+|ontology_enrichment_celltype=CL:0000540!1.37e-11!33;CL:0000047!1.37e-11!33;CL:0000031!1.37e-11!33;CL:0000404!1.37e-11!33;CL:0000117!2.63e-10!23;CL:0000337!2.63e-10!23;CL:0000393!4.68e-10!39;CL:0000211!4.68e-10!39;CL:0000221!3.46e-07!44;CL:0000133!3.46e-07!44;CL:0002319!6.85e-07!43|ontology_enrichment_celltype_v019_2=CL:0000540,3.21e-12,33;CL:0000047,3.21e-12,33;CL:0000031,3.21e-12,33;CL:0000404,3.21e-12,33;CL:0000117,7.42e-11,23;CL:0000337,7.42e-11,23;CL:0000393,3.25e-10,39;CL:0000211,3.25e-10,39;CL:0000221,6.83e-07,44;CL:0000133,6.83e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.11e-24!73;UBERON:0005743!2.11e-24!73;UBERON:0002346!1.01e-23!71;UBERON:0003075!1.01e-23!71;UBERON:0007284!1.01e-23!71;UBERON:0000073!1.01e-23!75;UBERON:0001016!1.01e-23!75;UBERON:0004121!1.10e-23!102;UBERON:0000924!1.10e-23!102;UBERON:0006601!1.10e-23!102;UBERON:0000033!2.50e-23!63;UBERON:0001049!1.80e-21!52;UBERON:0005068!1.80e-21!52;UBERON:0006241!1.80e-21!52;UBERON:0007135!1.80e-21!52;UBERON:0003056!2.94e-21!49;UBERON:0000955!4.50e-21!50;UBERON:0006238!4.50e-21!50;UBERON:0002616!2.07e-20!49;UBERON:0003080!4.98e-19!40;UBERON:0002780!2.18e-18!39;UBERON:0001890!2.18e-18!39;UBERON:0006240!2.18e-18!39;UBERON:0002020!5.10e-16!34;UBERON:0002791!4.20e-14!29;UBERON:0003528!4.20e-14!29;UBERON:0001893!4.20e-14!29;UBERON:0000153!3.14e-13!94;UBERON:0007811!8.92e-13!86;UBERON:0000956!4.42e-10!21;UBERON:0001869!4.42e-10!21;UBERON:0000203!4.42e-10!21;UBERON:0002619!1.33e-08!17;UBERON:0002021!5.84e-08!10;UBERON:0000411!5.84e-08!10;UBERON:0001950!5.84e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0002346,3.73e-26,64;UBERON:0003075,3.73e-26,64;UBERON:0007284,3.73e-26,64;UBERON:0001017,3.57e-25,73;UBERON:0010371,2.81e-24,73;UBERON:0001016,4.44e-24,75;UBERON:0000073,6.62e-24,54;UBERON:0004121,1.59e-23,95;UBERON:0000924,1.59e-23,95;UBERON:0006601,1.59e-23,95;UBERON:0001049,9.10e-23,52;UBERON:0005068,9.10e-23,52;UBERON:0006241,9.10e-23,52;UBERON:0007135,9.10e-23,52;UBERON:0003056,3.32e-22,49;UBERON:0000955,1.47e-20,47;UBERON:0006238,1.47e-20,47;UBERON:0002616,7.22e-20,46;UBERON:0003080,7.93e-20,40;UBERON:0002780,3.78e-19,39;UBERON:0001890,3.78e-19,39;UBERON:0006240,3.78e-19,39;UBERON:0010314,3.29e-17,92;UBERON:0002020,1.24e-16,34;UBERON:0003528,1.35e-14,29;UBERON:0002791,1.35e-14,29;UBERON:0001893,1.35e-14,29;UBERON:0000956,2.47e-10,21;UBERON:0001869,2.47e-10,21;UBERON:0000203,2.47e-10,21;UBERON:0002619,9.23e-09,17;UBERON:0002021,2.31e-08,10;UBERON:0000411,2.31e-08,10;UBERON:0001950,2.31e-08,10|phase1_expression=7.8472935081349,0,0.454999239389536,0,0,0.33575854382378,1.63528848416868,0.387369970324729,0.985521055061667,0.936258105287974,0,1.83475965689274,0,0.0874204024189974,0,0.202475267389826,0,0.473193248037357,0.411343300817216,0.42438965179803,3.99703463710028,0,0,0.47997726838022,0.68822784320151,0.57423196411502,0,1.29282739611533,0,0.504060259519861,0.221730510655305,0,0,0,0.288851619751275,0,0.612508068787107,0,0,0,0,0,0,2.01434908760924,1.92616169317078,1.65192076945513,0,0.218025156380447,0.659058548203415,1.36100929351998,0.839918529752175,0,0.167782606057736,0,0.336093799142464,0.771778308107841,2.0057340795713,0.515672092277442,8.29497489524351,7.93486468908049,7.60597684207415,0,0,0,0,0.7104801149461,0.898800331555214,0.768436610643109,6.32506635081714,4.72520784160917,5.25812403378455,4.85606673486466,3.3130281142742,8.81933754347669,6.42164655822184,3.67687514644008,9.91042928994498,13.1517958227743,12.4421291937557,9.49581271657396,12.4423195299277,18.7528813400434,4.74611098302348,7.31591393041184,12.071061574368,14.142172102736,14.3795397607094,10.4383689662168,0.984440513331393,1.51143120213571,0.579728977403356,0,0,1.07940638327563,0,0.448026887097336,1.54488862144927,0.852151612890289,1.29893002301434,1.41335829804136,5.91542363062058,2.56652954828636,0,7.11066703153331,0.216491041011214,0.253359865475099,0,1.59857431606684,0.517875767294343,1.48442139064825,3.46970653532272,2.13125834818499,1.15307748628029,2.86373017049983,3.99801604261396,0.628332956648377,0.988779870937496,0.86759614151947,0,0.323533699894818,0,1.45462575940567,0,11.4184510834503,4.60782754989601,0.255457055208591,0.718890747035522,1.19980546198682,0.381210681219194,19.0234112044125,20.5875271268382,31.0366249718775,31.6360262749943,29.1515621356577,17.8697718321222,15.8996437806402,1.32391173005411,1.11966273549084,4.29628689337247,3.57751155007006,3.3831315170303,1.60931473103431,5.22180176435513,6.0281927134286,6.19132142277083,8.45550553880009,4.59138450342671,10.0894314588216,2.37124792226126,3.9712276835242,2.63926686245923,1.53437012699302,3.05851974148158,3.83077383174383,3.2925141825271,2.58744546864041,0,0,0,1.44988040774851,1.87620847984877,1.98068267607116,1.65721314909647,1.37734962223183,1.0798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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:213582 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-1bp_to_uc008poz.1_5end | |||
|cluster_id=chr3:82162089..82162107,+ | |||
|description=CAGE_peak_2_at_Mtap9_5end | |||
|id=chr3:82162089..82162107,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.37e-11!33;CL:0000047!1.37e-11!33;CL:0000031!1.37e-11!33;CL:0000404!1.37e-11!33;CL:0000117!2.63e-10!23;CL:0000337!2.63e-10!23;CL:0000393!4.68e-10!39;CL:0000211!4.68e-10!39;CL:0000221!3.46e-07!44;CL:0000133!3.46e-07!44;CL:0002319!6.85e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.21e-12,33;CL:0000047,3.21e-12,33;CL:0000031,3.21e-12,33;CL:0000404,3.21e-12,33;CL:0000117,7.42e-11,23;CL:0000337,7.42e-11,23;CL:0000393,3.25e-10,39;CL:0000211,3.25e-10,39;CL:0000221,6.83e-07,44;CL:0000133,6.83e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.11e-24!73;UBERON:0005743!2.11e-24!73;UBERON:0002346!1.01e-23!71;UBERON:0003075!1.01e-23!71;UBERON:0007284!1.01e-23!71;UBERON:0000073!1.01e-23!75;UBERON:0001016!1.01e-23!75;UBERON:0004121!1.10e-23!102;UBERON:0000924!1.10e-23!102;UBERON:0006601!1.10e-23!102;UBERON:0000033!2.50e-23!63;UBERON:0001049!1.80e-21!52;UBERON:0005068!1.80e-21!52;UBERON:0006241!1.80e-21!52;UBERON:0007135!1.80e-21!52;UBERON:0003056!2.94e-21!49;UBERON:0000955!4.50e-21!50;UBERON:0006238!4.50e-21!50;UBERON:0002616!2.07e-20!49;UBERON:0003080!4.98e-19!40;UBERON:0002780!2.18e-18!39;UBERON:0001890!2.18e-18!39;UBERON:0006240!2.18e-18!39;UBERON:0002020!5.10e-16!34;UBERON:0002791!4.20e-14!29;UBERON:0003528!4.20e-14!29;UBERON:0001893!4.20e-14!29;UBERON:0000153!3.14e-13!94;UBERON:0007811!8.92e-13!86;UBERON:0000956!4.42e-10!21;UBERON:0001869!4.42e-10!21;UBERON:0000203!4.42e-10!21;UBERON:0002619!1.33e-08!17;UBERON:0002021!5.84e-08!10;UBERON:0000411!5.84e-08!10;UBERON:0001950!5.84e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,3.73e-26,64;UBERON:0003075,3.73e-26,64;UBERON:0007284,3.73e-26,64;UBERON:0001017,3.57e-25,73;UBERON:0010371,2.81e-24,73;UBERON:0001016,4.44e-24,75;UBERON:0000073,6.62e-24,54;UBERON:0004121,1.59e-23,95;UBERON:0000924,1.59e-23,95;UBERON:0006601,1.59e-23,95;UBERON:0001049,9.10e-23,52;UBERON:0005068,9.10e-23,52;UBERON:0006241,9.10e-23,52;UBERON:0007135,9.10e-23,52;UBERON:0003056,3.32e-22,49;UBERON:0000955,1.47e-20,47;UBERON:0006238,1.47e-20,47;UBERON:0002616,7.22e-20,46;UBERON:0003080,7.93e-20,40;UBERON:0002780,3.78e-19,39;UBERON:0001890,3.78e-19,39;UBERON:0006240,3.78e-19,39;UBERON:0010314,3.29e-17,92;UBERON:0002020,1.24e-16,34;UBERON:0003528,1.35e-14,29;UBERON:0002791,1.35e-14,29;UBERON:0001893,1.35e-14,29;UBERON:0000956,2.47e-10,21;UBERON:0001869,2.47e-10,21;UBERON:0000203,2.47e-10,21;UBERON:0002619,9.23e-09,17;UBERON:0002021,2.31e-08,10;UBERON:0000411,2.31e-08,10;UBERON:0001950,2.31e-08,10 | |||
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| |||
|short_description=p2@Mtap9 | |||
}} |
Revision as of 01:27, 4 August 2015
Short description: | p2@Mtap9 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Mtap9_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -1bp_to_uc008poz.1_5end |
EntrezGene: | 213582 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.21e-12 | 33 |
neuronal stem cell | 3.21e-12 | 33 |
neuroblast | 3.21e-12 | 33 |
electrically signaling cell | 3.21e-12 | 33 |
CNS neuron (sensu Vertebrata) | 7.42e-11 | 23 |
neuroblast (sensu Vertebrata) | 7.42e-11 | 23 |
electrically responsive cell | 3.25e-10 | 39 |
electrically active cell | 3.25e-10 | 39 |
ectodermal cell | 6.83e-07 | 44 |
neurectodermal cell | 6.83e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 3.73e-26 | 64 |
neural plate | 3.73e-26 | 64 |
presumptive neural plate | 3.73e-26 | 64 |
central nervous system | 3.57e-25 | 73 |
ecto-epithelium | 2.81e-24 | 73 |
nervous system | 4.44e-24 | 75 |
regional part of nervous system | 6.62e-24 | 54 |
ectoderm-derived structure | 1.59e-23 | 95 |
ectoderm | 1.59e-23 | 95 |
presumptive ectoderm | 1.59e-23 | 95 |
neural tube | 9.10e-23 | 52 |
neural rod | 9.10e-23 | 52 |
future spinal cord | 9.10e-23 | 52 |
neural keel | 9.10e-23 | 52 |
pre-chordal neural plate | 3.32e-22 | 49 |
brain | 1.47e-20 | 47 |
future brain | 1.47e-20 | 47 |
regional part of brain | 7.22e-20 | 46 |
anterior neural tube | 7.93e-20 | 40 |
regional part of forebrain | 3.78e-19 | 39 |
forebrain | 3.78e-19 | 39 |
future forebrain | 3.78e-19 | 39 |
structure with developmental contribution from neural crest | 3.29e-17 | 92 |
gray matter | 1.24e-16 | 34 |
brain grey matter | 1.35e-14 | 29 |
regional part of telencephalon | 1.35e-14 | 29 |
telencephalon | 1.35e-14 | 29 |
cerebral cortex | 2.47e-10 | 21 |
cerebral hemisphere | 2.47e-10 | 21 |
pallium | 2.47e-10 | 21 |
regional part of cerebral cortex | 9.23e-09 | 17 |
occipital lobe | 2.31e-08 | 10 |
visual cortex | 2.31e-08 | 10 |
neocortex | 2.31e-08 | 10 |