FFCP PHASE1:Mm9::chr3:88425381..88425461,+: Difference between revisions
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{{FFCP|EntrezGene=16800|HGNC=|MCL_coexpression_id=22|UniProt=Q60875|association_with_transcript=65bp_to_NM_001198912,NM_001198913,uc008pvy.2,uc008pvz.2_5end|description=CAGE_peak_2_at_Arhgef2_5end|id=chr3:88425381..88425461,+|ontology_enrichment_celltype=CL:0000540!8.34e-17!33;CL:0000047!8.34e-17!33;CL:0000031!8.34e-17!33;CL:0000404!8.34e-17!33;CL:0002319!3.20e-14!43;CL:0000221!1.18e-13!44;CL:0000133!1.18e-13!44;CL:0000117!2.59e-13!23;CL:0000337!2.59e-13!23;CL:0000393!8.37e-12!39;CL:0000211!8.37e-12!39;CL:0000055!1.29e-09!50|ontology_enrichment_celltype_v019_2=CL:0000540,7.61e-17,33;CL:0000047,7.61e-17,33;CL:0000031,7.61e-17,33;CL:0000404,7.61e-17,33;CL:0002319,3.78e-14,43;CL:0000221,1.39e-13,44;CL:0000133,1.39e-13,44;CL:0000117,2.41e-13,23;CL:0000337,2.41e-13,23;CL:0000393,7.87e-12,39;CL:0000211,7.87e-12,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!7.58e-28!73;UBERON:0005743!7.58e-28!73;UBERON:0000073!3.96e-26!75;UBERON:0001016!3.96e-26!75;UBERON:0002346!3.22e-21!71;UBERON:0003075!3.22e-21!71;UBERON:0007284!3.22e-21!71;UBERON:0004121!5.16e-21!102;UBERON:0000924!5.16e-21!102;UBERON:0006601!5.16e-21!102;UBERON:0001049!5.74e-19!52;UBERON:0005068!5.74e-19!52;UBERON:0006241!5.74e-19!52;UBERON:0007135!5.74e-19!52;UBERON:0000033!1.21e-18!63;UBERON:0000955!1.42e-17!50;UBERON:0006238!1.42e-17!50;UBERON:0003056!2.62e-17!49;UBERON:0002616!5.93e-17!49;UBERON:0002020!2.45e-15!34;UBERON:0003080!2.63e-14!40;UBERON:0002780!7.44e-14!39;UBERON:0001890!7.44e-14!39;UBERON:0006240!7.44e-14!39;UBERON:0002791!1.10e-12!29;UBERON:0003528!1.10e-12!29;UBERON:0001893!1.10e-12!29;UBERON:0000153!5.29e-12!94;UBERON:0007811!1.60e-10!86;UBERON:0000956!3.56e-09!21;UBERON:0001869!3.56e-09!21;UBERON:0000203!3.56e-09!21;UBERON:0002619!6.53e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.46e-28,73;UBERON:0001016,4.45e-26,75;UBERON:0002346,1.06e-23,64;UBERON:0003075,1.06e-23,64;UBERON:0007284,1.06e-23,64;UBERON:0004121,1.99e-22,95;UBERON:0000924,1.99e-22,95;UBERON:0006601,1.99e-22,95;UBERON:0000073,9.07e-20,54;UBERON:0001049,5.16e-19,52;UBERON:0005068,5.16e-19,52;UBERON:0006241,5.16e-19,52;UBERON:0007135,5.16e-19,52;UBERON:0010371,3.40e-18,73;UBERON:0010314,1.30e-17,92;UBERON:0003056,2.39e-17,49;UBERON:0000955,2.44e-16,47;UBERON:0006238,2.44e-16,47;UBERON:0002616,1.00e-15,46;UBERON:0002020,2.25e-15,34;UBERON:0003080,2.43e-14,40;UBERON:0002780,6.91e-14,39;UBERON:0001890,6.91e-14,39;UBERON:0006240,6.91e-14,39;UBERON:0003528,1.03e-12,29;UBERON:0002791,1.03e-12,29;UBERON:0001893,1.03e-12,29;UBERON:0000956,3.40e-09,21;UBERON:0001869,3.40e-09,21;UBERON:0000203,3.40e-09,21;UBERON:0002619,6.32e-07,17|phase1_expression=6.72625157840135,0,0.909998478779072,0,0,0.503637815735669,0.467225281191051,2.7115897922731,3.51971805379167,4.21316147379588,3.25314139628459,2.07407613387875,1.19840510951844,1.31130603628496,0,1.61980213911861,0.699561878128147,0.946386496074713,1.91960207048034,0.42438965179803,4.16712121740242,8.14185799847259,6.52999472847338,0.95995453676044,0.45881856213434,0,0,0,0,0.252030129759931,0,4.44521471421742,1.23012957516914,0,0,0.166234645358492,0.204169356262369,2.92972141515835,1.5626706890476,2.09409497589519,1.17646297606203,1.36609096991689,2.91306211818692,1.51076181570693,2.23029248682932,3.12029478674859,4.69434806608824,10.9012578190223,3.73466510648602,4.86074747685709,5.17949760013841,14.3752564364972,0.503347818173209,0.725362142011344,0.672187598284928,1.28629718017973,1.14613375975503,1.54701627683233,45.1165707716903,56.0730438028355,48.1711866664696,3.38844532069132,4.4464739805557,7.19919773825119,6.92206453796882,7.104801149461,9.28760342607055,8.4528027170742,38.5725357787537,45.0919834027847,42.0649922702764,17.424710048632,16.565140571371,39.3195465480002,40.542634240714,52.3954708367712,18.7196997698961,14.0456071893706,11.366883460962,46.0283144178377,49.0373769708916,38.0266760506435,12.0048689570594,8.4414391504752,11.1542720877071,15.0260578591571,18.9354335462807,39.3302830691384,0.832988126665025,2.34271836331035,3.47837386442013,0,0,0,0,1.34408066129201,1.82577746171277,2.38602451609281,1.55871602761721,2.12003744706204,2.53518155598025,1.28326477414318,2.54805239706646,7.11066703153331,0.432982082022428,0.506719730950197,1.01104889002957,1.48439043634778,1.8125651855302,1.63286352971307,8.84775166507293,6.69824052286711,5.76538743140146,4.6724018571313,4.8211369925639,1.13099932196708,1.48316980640624,2.89198713839823,1.76922110389975,8.25010934731787,1.54589062922275,1.45462575940567,0,12.0040126774734,10.2628886338593,0,4.07371423320129,2.99951365496704,3.55796635804581,15.5782264981016,16.9275223042892,26.7643770000401,15.8180131374972,12.7857728665165,13.9217989854905,14.1149898868949,6.61955865027056,4.60305791257344,1.76905930903572,1.05220927943237,16.9156575851515,19.0818746679783,15.1252189036493,20.4958552256572,17.1451977861346,17.5515796790244,18.3655380137068,10.3481348295606,10.1316956678436,16.4522289746003,20.0584281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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:16800 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q60875 | |||
|association_with_transcript=65bp_to_NM_001198912,NM_001198913,uc008pvy.2,uc008pvz.2_5end | |||
|cluster_id=chr3:88425381..88425461,+ | |||
|description=CAGE_peak_2_at_Arhgef2_5end | |||
|id=chr3:88425381..88425461,+ | |||
|ontology_enrichment_celltype=CL:0000540!8.34e-17!33;CL:0000047!8.34e-17!33;CL:0000031!8.34e-17!33;CL:0000404!8.34e-17!33;CL:0002319!3.20e-14!43;CL:0000221!1.18e-13!44;CL:0000133!1.18e-13!44;CL:0000117!2.59e-13!23;CL:0000337!2.59e-13!23;CL:0000393!8.37e-12!39;CL:0000211!8.37e-12!39;CL:0000055!1.29e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,7.61e-17,33;CL:0000047,7.61e-17,33;CL:0000031,7.61e-17,33;CL:0000404,7.61e-17,33;CL:0002319,3.78e-14,43;CL:0000221,1.39e-13,44;CL:0000133,1.39e-13,44;CL:0000117,2.41e-13,23;CL:0000337,2.41e-13,23;CL:0000393,7.87e-12,39;CL:0000211,7.87e-12,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!7.58e-28!73;UBERON:0005743!7.58e-28!73;UBERON:0000073!3.96e-26!75;UBERON:0001016!3.96e-26!75;UBERON:0002346!3.22e-21!71;UBERON:0003075!3.22e-21!71;UBERON:0007284!3.22e-21!71;UBERON:0004121!5.16e-21!102;UBERON:0000924!5.16e-21!102;UBERON:0006601!5.16e-21!102;UBERON:0001049!5.74e-19!52;UBERON:0005068!5.74e-19!52;UBERON:0006241!5.74e-19!52;UBERON:0007135!5.74e-19!52;UBERON:0000033!1.21e-18!63;UBERON:0000955!1.42e-17!50;UBERON:0006238!1.42e-17!50;UBERON:0003056!2.62e-17!49;UBERON:0002616!5.93e-17!49;UBERON:0002020!2.45e-15!34;UBERON:0003080!2.63e-14!40;UBERON:0002780!7.44e-14!39;UBERON:0001890!7.44e-14!39;UBERON:0006240!7.44e-14!39;UBERON:0002791!1.10e-12!29;UBERON:0003528!1.10e-12!29;UBERON:0001893!1.10e-12!29;UBERON:0000153!5.29e-12!94;UBERON:0007811!1.60e-10!86;UBERON:0000956!3.56e-09!21;UBERON:0001869!3.56e-09!21;UBERON:0000203!3.56e-09!21;UBERON:0002619!6.53e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.46e-28,73;UBERON:0001016,4.45e-26,75;UBERON:0002346,1.06e-23,64;UBERON:0003075,1.06e-23,64;UBERON:0007284,1.06e-23,64;UBERON:0004121,1.99e-22,95;UBERON:0000924,1.99e-22,95;UBERON:0006601,1.99e-22,95;UBERON:0000073,9.07e-20,54;UBERON:0001049,5.16e-19,52;UBERON:0005068,5.16e-19,52;UBERON:0006241,5.16e-19,52;UBERON:0007135,5.16e-19,52;UBERON:0010371,3.40e-18,73;UBERON:0010314,1.30e-17,92;UBERON:0003056,2.39e-17,49;UBERON:0000955,2.44e-16,47;UBERON:0006238,2.44e-16,47;UBERON:0002616,1.00e-15,46;UBERON:0002020,2.25e-15,34;UBERON:0003080,2.43e-14,40;UBERON:0002780,6.91e-14,39;UBERON:0001890,6.91e-14,39;UBERON:0006240,6.91e-14,39;UBERON:0003528,1.03e-12,29;UBERON:0002791,1.03e-12,29;UBERON:0001893,1.03e-12,29;UBERON:0000956,3.40e-09,21;UBERON:0001869,3.40e-09,21;UBERON:0000203,3.40e-09,21;UBERON:0002619,6.32e-07,17 | |||
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| |||
|short_description=p2@Arhgef2 | |||
}} |
Revision as of 04:17, 4 August 2015
Short description: | p2@Arhgef2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Arhgef2_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 65bp_to_NM_001198912, NM_001198913, uc008pvy.2, uc008pvz.2_5end |
EntrezGene: | 16800 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 7.61e-17 | 33 |
neuronal stem cell | 7.61e-17 | 33 |
neuroblast | 7.61e-17 | 33 |
electrically signaling cell | 7.61e-17 | 33 |
neural cell | 3.78e-14 | 43 |
ectodermal cell | 1.39e-13 | 44 |
neurectodermal cell | 1.39e-13 | 44 |
CNS neuron (sensu Vertebrata) | 2.41e-13 | 23 |
neuroblast (sensu Vertebrata) | 2.41e-13 | 23 |
electrically responsive cell | 7.87e-12 | 39 |
electrically active cell | 7.87e-12 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 6.46e-28 | 73 |
nervous system | 4.45e-26 | 75 |
neurectoderm | 1.06e-23 | 64 |
neural plate | 1.06e-23 | 64 |
presumptive neural plate | 1.06e-23 | 64 |
ectoderm-derived structure | 1.99e-22 | 95 |
ectoderm | 1.99e-22 | 95 |
presumptive ectoderm | 1.99e-22 | 95 |
regional part of nervous system | 9.07e-20 | 54 |
neural tube | 5.16e-19 | 52 |
neural rod | 5.16e-19 | 52 |
future spinal cord | 5.16e-19 | 52 |
neural keel | 5.16e-19 | 52 |
ecto-epithelium | 3.40e-18 | 73 |
structure with developmental contribution from neural crest | 1.30e-17 | 92 |
pre-chordal neural plate | 2.39e-17 | 49 |
brain | 2.44e-16 | 47 |
future brain | 2.44e-16 | 47 |
regional part of brain | 1.00e-15 | 46 |
gray matter | 2.25e-15 | 34 |
anterior neural tube | 2.43e-14 | 40 |
regional part of forebrain | 6.91e-14 | 39 |
forebrain | 6.91e-14 | 39 |
future forebrain | 6.91e-14 | 39 |
brain grey matter | 1.03e-12 | 29 |
regional part of telencephalon | 1.03e-12 | 29 |
telencephalon | 1.03e-12 | 29 |
cerebral cortex | 3.40e-09 | 21 |
cerebral hemisphere | 3.40e-09 | 21 |
pallium | 3.40e-09 | 21 |
regional part of cerebral cortex | 6.32e-07 | 17 |