FFCP PHASE1:Hg19::chr17:42988599..42988605,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport= | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=2670 | |EntrezGene=entrezgene:2670 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=4235 | |HGNC=HGNC:4235 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt=P14136 | |UniProt=uniprot:P14136 | ||
|association_with_transcript=72bp_to_M26638_5end | |association_with_transcript=72bp_to_M26638_5end | ||
|cluster_id=chr17:42988599..42988605,- | |||
|coexpression_cluster_id=C545 | |coexpression_cluster_id=C545 | ||
|description=CAGE_peak_46_at_GFAP_5end | |description=CAGE_peak_46_at_GFAP_5end | ||
Revision as of 17:35, 25 July 2015
| Short description: | p46@GFAP |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_46_at_GFAP_5end |
| Coexpression cluster: | C545_Astrocyte_Neural_Neurons_parietal_neuroectodermal_occipital_temporal |
| Association with transcript: | 72bp_to_M26638_5end |
| EntrezGene: | 2670 |
| HGNC: | 4235 |
| UniProt: | P14136 |
| Genome view: | ZENBU |
View on UCSC genome browser
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CAGE Expression
| Sample | p46@GFAP |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| astrocyte of the cerebral cortex | 6.07e-75 | 3 |
| neuronal stem cell | 1.93e-49 | 8 |
| neural cell | 8.95e-45 | 25 |
| oligodendrocyte | 1.09e-32 | 7 |
| macroglial cell | 1.09e-32 | 7 |
| astrocyte | 1.09e-32 | 7 |
| oligodendrocyte precursor cell | 1.09e-32 | 7 |
| neurectodermal cell | 6.10e-20 | 59 |
| neuron | 2.19e-17 | 6 |
| neuroblast | 2.19e-17 | 6 |
Showing 1 to 10 of 18 entries
| Ontology term | p-value | n |
|---|---|---|
| central nervous system | 1.11e-14 | 81 |
| nervous system | 3.00e-13 | 89 |
| cerebral cortex | 2.38e-09 | 25 |
| pallium | 2.38e-09 | 25 |
| regional part of telencephalon | 1.70e-07 | 32 |
| cerebral hemisphere | 1.70e-07 | 32 |
| brain grey matter | 4.21e-07 | 34 |
| gray matter | 4.21e-07 | 34 |
| telencephalon | 4.21e-07 | 34 |
| ectoderm-derived structure | 5.65e-07 | 171 |
Showing 1 to 10 of 12 entries
