CL:0002564: Difference between revisions
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|located_in= | |located_in= | ||
|name=nucleus pulposus cell of intervertebral disc | |name=nucleus pulposus cell of intervertebral disc | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date=2011-03-02T02:12:23Z | |obo_creation_date=2011-03-02T02:12:23Z | ||
|part_of=UBERON:0002242 | |part_of=UBERON:0002242 | ||
Latest revision as of 16:44, 12 September 2014
| Name: | nucleus pulposus cell of intervertebral disc |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A connective tissue cell of the nucleus pulposus cell of intervertebral disc." [GOC:tfm] |
| Created by: | tmeehan |
| Creation date: | 2011-03-02T02:12:23Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0002320(connective tissue cell) |
|---|---|
| part_of: | UBERON:0002242(nucleus pulposus) |
Children
| derives from: | FF:0000123 (human nucleus pulposus cell of intervertebral disc sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11252-116F1 (Nucleus Pulposus Cell, donor1)
- 11409-118E5 (Nucleus Pulposus Cell, donor2)
- 11462-119B4 (Nucleus Pulposus Cell, donor3)
Mouse (Mus musculus)
- 11252-116F1 (Nucleus Pulposus Cell, donor1)
- 11409-118E5 (Nucleus Pulposus Cell, donor2)
- 11462-119B4 (Nucleus Pulposus Cell, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002564 (nucleus pulposus cell of intervertebral disc), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 8.26e-98 | FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_4459c2cc496256c23f81ffc0b9538aed | p@chr3:174737010..174737023, + |
| 8.26e-98 | FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_4459c2cc496256c23f81ffc0b9538aed | p@chr3:174737010..174737023, + |
| 3.03e-84 | FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_c70d19699c3a83da2d8c88baf4806f8a | p4@PAX1 |
| 3.03e-84 | FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_c70d19699c3a83da2d8c88baf4806f8a | p4@PAX1 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_c71c3ead3b294735246ab8db4370d34d | p@chr9:33028063..33028067, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_c71c3ead3b294735246ab8db4370d34d | p@chr9:33028063..33028067, - |
| 5.46e-60 | FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_9535d8bdf01864c8a479c36d289f72a2 | p@chr5:30104176..30104187, - |
| 5.46e-60 | FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_9535d8bdf01864c8a479c36d289f72a2 | p@chr5:30104176..30104187, - |
| 9.77e-45 | FFCP PHASE1:Hg19::chr2:241987807..241987808,+#_16dc4aa7aeec31f71cde6ec5a452f9b6 | p22@SNED1 |
| 9.77e-45 | FFCP PHASE2:Hg19::chr2:241987807..241987808,+#_16dc4aa7aeec31f71cde6ec5a452f9b6 | p22@SNED1 |
| 6.64e-41 | FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_b2609e69c601e0f62a08a961e518c5d8 | p15@SNED1 |
| 6.64e-41 | FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_b2609e69c601e0f62a08a961e518c5d8 | p15@SNED1 |
| 1.31e-40 | FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_1cdc6a175e9004f86ef42118de908e4d | p20@CAPZB |
| 1.31e-40 | FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_1cdc6a175e9004f86ef42118de908e4d | p20@CAPZB |
| 1.8e-38 | FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_e42d55ff207fbb83806eea5d46233778 | p@chr2:12248310..12248334, - |
| 1.8e-38 | FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_e42d55ff207fbb83806eea5d46233778 | p@chr2:12248310..12248334, - |
| 2.75e-34 | FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_6be2b32c550a8a28606d42d572c061cf | p6@SIX4 |
| 2.75e-34 | FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_6be2b32c550a8a28606d42d572c061cf | p6@SIX4 |
| 5.96e-34 | FFCP PHASE2:Hg19::chr13:51101468..51101499,-#_3db98003e2f7033b38e796f488698dda | p1@ENST00000428276 |
| 5.96e-34 | FFCP PHASE2:Hg19::chr11:93468399..93468405,-#_3db98003e2f7033b38e796f488698dda | p19@TAF1D, p1@SNORA40 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr13:51101468..51101499,-#_3db98003e2f7033b38e796f488698dda | p1@ENST00000428276 |
| 5.96e-34 | FFCP PHASE2:Hg19::chr4:88727274..88727278,+#_3db98003e2f7033b38e796f488698dda | p@chr4:88727274..88727278, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr4:88727274..88727278,+#_3db98003e2f7033b38e796f488698dda | p@chr4:88727274..88727278, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr11:93468399..93468405,-#_3db98003e2f7033b38e796f488698dda | p19@TAF1D, p1@SNORA40 |
| 2.09e-33 | FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_f5765e55777040ea2dd0bcfba4b9ad5b | p4@NKX3-2 |
| 2.09e-33 | FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_f5765e55777040ea2dd0bcfba4b9ad5b | p4@NKX3-2 |
| 4.01e-31 | FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_62d219110e0a7a585ff4ae88f8e1aad1 | p19@HDAC9 |
| 4.01e-31 | FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_62d219110e0a7a585ff4ae88f8e1aad1 | p19@HDAC9 |
| 1.98e-30 | FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_cb9bc95c8f9b2eb0614514d837018f0a | p@chr2:241897125..241897142, - |
| 1.98e-30 | FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_cb9bc95c8f9b2eb0614514d837018f0a | p@chr2:241897125..241897142, - |
| 4.84e-30 | FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_86e8d098af97dde0cc06eeee7accce6a | p@chr3:80727046..80727051, - |
| 4.84e-30 | FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_86e8d098af97dde0cc06eeee7accce6a | p@chr3:80727046..80727051, - |
| 7.46e-30 | FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_57cafb42c3e1a9838b0bb39554114c7f | p@chr7:158224707..158224729, - |
| 7.46e-30 | FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_57cafb42c3e1a9838b0bb39554114c7f | p@chr7:158224707..158224729, - |
| 1.48e-29 | FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_d4d60f580537466dec94c99cb5f7a40a | p@chr1:65888177..65888194, + |
| 1.48e-29 | FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_d4d60f580537466dec94c99cb5f7a40a | p@chr1:65888177..65888194, + |
| 2.72e-28 | FFCP PHASE2:Hg19::chr14:100848311..100848321,+#_aca7084480222cb172fae2595fd4d430 | p5@WDR25 |
| 2.72e-28 | FFCP PHASE1:Hg19::chr14:100848311..100848321,+#_aca7084480222cb172fae2595fd4d430 | p5@WDR25 |
| 3.26e-27 | FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_24998deac75850b3698d6eb7da8b395c | p1@MGC27382 |
| 3.26e-27 | FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_24998deac75850b3698d6eb7da8b395c | p1@MGC27382 |
| 6.92e-27 | FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_643b63144b409502c7fe17d58e23d1d6 | p@chr1:19778678..19778689, - |
| 6.92e-27 | FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_643b63144b409502c7fe17d58e23d1d6 | p@chr1:19778678..19778689, - |
| 1.46e-26 | FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_09329eafc0c52bbb4e5f14897a22c14f | p18@HDAC9 |
| 1.46e-26 | FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_09329eafc0c52bbb4e5f14897a22c14f | p18@HDAC9 |
| 1.74e-26 | FFCP PHASE2:Hg19::chr4:156129991..156130013,+#_3c94e1d5ec074f79b6da84ac32cbcff3 | p2@NPY2R |
| 1.74e-26 | FFCP PHASE1:Hg19::chr4:156129991..156130013,+#_3c94e1d5ec074f79b6da84ac32cbcff3 | p2@NPY2R |
| 7.41e-26 | FFCP PHASE2:Hg19::chr14:61113228..61113233,-#_2e708d3012e545c6222c80c756d9f7ad | p@chr14:61113228..61113233, - |
| 7.41e-26 | FFCP PHASE1:Hg19::chr14:61113228..61113233,-#_2e708d3012e545c6222c80c756d9f7ad | p@chr14:61113228..61113233, - |
| 2.04e-25 | FFCP PHASE1:Hg19::chr7:27212374..27212387,-#_338698b714cd28746e1a03db7ff40208 | p12@HOXA10 |
| 2.04e-25 | FFCP PHASE2:Hg19::chr7:27212374..27212387,-#_338698b714cd28746e1a03db7ff40208 | p12@HOXA10 |
| 6.22e-25 | FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_3494c2e6326c043a4840ae6c36cfd2a3 | p1@uc010aki.1 |
| 6.22e-25 | FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_3494c2e6326c043a4840ae6c36cfd2a3 | p1@uc010aki.1 |
| 9.49e-25 | FFCP PHASE1:Hg19::chr20:21686317..21686350,+#_05ea90c174d1e5578a7e42e683935563 | p1@PAX1 |
| 9.49e-25 | FFCP PHASE2:Hg19::chr20:21686317..21686350,+#_05ea90c174d1e5578a7e42e683935563 | p1@PAX1 |
| 4.58e-24 | FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_173144db2a9f9b174613e22f0274a4a7 | p@chr5:140887761..140887777, + |
| 4.58e-24 | FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_173144db2a9f9b174613e22f0274a4a7 | p@chr5:140887761..140887777, + |
| 5.35e-24 | FFCP PHASE1:Hg19::chr20:21686290..21686311,+#_31b807691754732fcd8ac039aeca6e82 | p2@PAX1 |
| 5.35e-24 | FFCP PHASE2:Hg19::chr20:21686290..21686311,+#_31b807691754732fcd8ac039aeca6e82 | p2@PAX1 |
| 8.55e-24 | FFCP PHASE1:Hg19::chr7:18832759..18832786,+#_956b2ac207b28502d371ba8434322a65 | p16@HDAC9 |
| 8.55e-24 | FFCP PHASE2:Hg19::chr7:18832759..18832786,+#_956b2ac207b28502d371ba8434322a65 | p16@HDAC9 |
| 2.01e-23 | FFCP PHASE1:Hg19::chr4:77068930..77068959,-#_6f1447553ab67b6aaad87ce9858e32f6 | p4@NUP54 |
| 2.01e-23 | FFCP PHASE2:Hg19::chr4:77068930..77068959,-#_6f1447553ab67b6aaad87ce9858e32f6 | p4@NUP54 |
| 2.28e-23 | FFCP PHASE2:Hg19::chr4:13546632..13546662,-#_5137b53f133558f518780b83d7e013a2 | p1@NKX3-2 |
| 2.28e-23 | FFCP PHASE1:Hg19::chr4:13546632..13546662,-#_5137b53f133558f518780b83d7e013a2 | p1@NKX3-2 |
| 3.27e-23 | FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_7af7d59aad335431de5a7b3c66d91b18 | p3@uc010aki.1 |
| 3.27e-23 | FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_7af7d59aad335431de5a7b3c66d91b18 | p3@uc010aki.1 |
| 1.25e-22 | FFCP PHASE1:Hg19::chr1:78695343..78695353,+#_3b443200435172366623fa9736599c96 | p2@ENST00000413519 |
| 1.25e-22 | FFCP PHASE2:Hg19::chr1:78695343..78695353,+#_3b443200435172366623fa9736599c96 | p2@ENST00000413519 |
| 1.46e-22 | FFCP PHASE2:Hg19::chr9:123239747..123239765,-#_154a74f347918d6119de2d98bea65cc8 | p12@CDK5RAP2 |
| 1.46e-22 | FFCP PHASE1:Hg19::chr9:123239747..123239765,-#_154a74f347918d6119de2d98bea65cc8 | p12@CDK5RAP2 |
| 9.47e-22 | FFCP PHASE1:Hg19::chr1:171076859..171076870,+#_51b12955147b386ae5f10ab637192fc9 | p@chr1:171076859..171076870, + |
| 9.47e-22 | FFCP PHASE2:Hg19::chr1:171076859..171076870,+#_51b12955147b386ae5f10ab637192fc9 | p@chr1:171076859..171076870, + |
| 1.35e-21 | FFCP PHASE2:Hg19::chr7:100202784..100202796,-#_dc2cd72971494623ac52f3f6e5171032 | p@chr7:100202784..100202796, - |
| 1.35e-21 | FFCP PHASE1:Hg19::chr7:100202784..100202796,-#_dc2cd72971494623ac52f3f6e5171032 | p@chr7:100202784..100202796, - |
| 3.83e-21 | FFCP PHASE1:Hg19::chr14:37126814..37126834,+#_d3a1391006f519581ff875fc379d3709 | p4@PAX9 |
| 3.83e-21 | FFCP PHASE2:Hg19::chr14:37126814..37126834,+#_d3a1391006f519581ff875fc379d3709 | p4@PAX9 |
| 4.02e-21 | FFCP PHASE2:Hg19::chr3:176765178..176765190,-#_81ec4dc72c0df3f85fd6358e4f92750e | p@chr3:176765178..176765190, - |
| 4.02e-21 | FFCP PHASE1:Hg19::chr3:176765178..176765190,-#_81ec4dc72c0df3f85fd6358e4f92750e | p@chr3:176765178..176765190, - |
| 4.06e-21 | FFCP PHASE1:Hg19::chr1:19810947..19810977,-#_9050eb8281bf4faf29ed3d8e4e1dc61b | p17@CAPZB |
| 4.06e-21 | FFCP PHASE2:Hg19::chr1:19810947..19810977,-#_9050eb8281bf4faf29ed3d8e4e1dc61b | p17@CAPZB |
| 5.43e-21 | FFCP PHASE2:Hg19::chr12:54422268..54422278,+#_cc1e6e19c8749a18b106d95732b6f88d | p8@HOXC6 |
| 5.43e-21 | FFCP PHASE1:Hg19::chr12:54422268..54422278,+#_cc1e6e19c8749a18b106d95732b6f88d | p8@HOXC6 |
| 4.94e-20 | FFCP PHASE2:Hg19::chr17:38613285..38613298,-#_76e84af69eed72119e74030e92214034 | p@chr17:38613285..38613298, - |
| 4.94e-20 | FFCP PHASE1:Hg19::chr17:38613285..38613298,-#_76e84af69eed72119e74030e92214034 | p@chr17:38613285..38613298, - |
| 9.53e-20 | FFCP PHASE1:Hg19::chr20:43343596..43343608,+#_d2a9f4fa4a863a7ae1dd4b67b361358e | p6@WISP2 |
| 9.53e-20 | FFCP PHASE2:Hg19::chr20:43343596..43343608,+#_d2a9f4fa4a863a7ae1dd4b67b361358e | p6@WISP2 |
| 1.46e-19 | FFCP PHASE1:Hg19::chr1:78958320..78958332,+#_1a5ea6be67994e295cf76857229de9e2 | p2@PTGFR |
| 1.46e-19 | FFCP PHASE2:Hg19::chr1:78958320..78958332,+#_1a5ea6be67994e295cf76857229de9e2 | p2@PTGFR |
| 2.04e-19 | FFCP PHASE2:Hg19::chr4:70707689..70707711,-#_ea081de71230aefe66a9e251b9df085c | p@chr4:70707689..70707711, - |
| 2.04e-19 | FFCP PHASE1:Hg19::chr4:70707689..70707711,-#_ea081de71230aefe66a9e251b9df085c | p@chr4:70707689..70707711, - |
| 3.75e-19 | FFCP PHASE2:Hg19::chr14:37126870..37126882,+#_aca8f94d79b7f00c187168faae8510ae | p1@ENST00000555639 |
| 3.75e-19 | FFCP PHASE1:Hg19::chr14:37126870..37126882,+#_aca8f94d79b7f00c187168faae8510ae | p1@ENST00000555639 |
| 4.68e-19 | FFCP PHASE2:Hg19::chr2:12246664..12246694,+#_a6835dabd563b77f7a94618ac30e489c | p1@ENST00000449986 |
| 4.68e-19 | FFCP PHASE1:Hg19::chr2:12246664..12246694,+#_a6835dabd563b77f7a94618ac30e489c | p1@ENST00000449986 |
| 1.04e-18 | FFCP PHASE1:Hg19::chr3:158390171..158390180,-#_3103db540b5c561af1b562f4c5184fcc | p3@LXN |
| 1.04e-18 | FFCP PHASE2:Hg19::chr3:158390171..158390180,-#_3103db540b5c561af1b562f4c5184fcc | p3@LXN |
| 5.12e-18 | FFCP PHASE1:Hg19::chr6:112375300..112375334,+#_d8ec065c12a7957005b6e43519f4513a | p1@WISP3 |
| 5.12e-18 | FFCP PHASE2:Hg19::chr6:112375300..112375334,+#_d8ec065c12a7957005b6e43519f4513a | p1@WISP3 |
| 9.14e-18 | FFCP PHASE2:Hg19::chr8:77595678..77595688,+#_2933f578831553b27a615869e8255855 | p9@ZFHX4 |
| 9.14e-18 | FFCP PHASE1:Hg19::chr8:77595678..77595688,+#_2933f578831553b27a615869e8255855 | p9@ZFHX4 |
