UBERON:0001443: Difference between revisions
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|located_in= | |located_in= | ||
|name=chest | |name=chest | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000915 | |part_of=UBERON:0000915 | ||
Latest revision as of 17:18, 12 September 2014
| Name: | chest | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Subdivision of trunk proper, which is demarcated from the neck by the plane of the superior thoracic aperture and from the abdomen internally by the inferior surface of the diaphragm and externally by the costal margin and associated with the thoracic vertebral column and ribcage and from the back of the thorax by the external surface of the posterolateral part of the rib cage, the anterior surface of the thoracic vertebral column and the posterior axillary lines; together with the abdomen and the perineum, it constitutes the trunk proper[FMA]." [FMA:9576, Wikipedia:Chest] | ||
| Xrefs: |
| ||
| Synonyms: |
"anterior chest" EXACT [FMA:24816] "anterior thoracic region" EXACT [] "anterolateral part of thorax" EXACT [] "front of chest" EXACT [FMA:24816] "front of thorax" EXACT [] "pectus" EXACT [FMA:24816, FMA:TA] "thorax" RELATED [FMA:9576] "thorax" RELATED LATIN [Wikipedia:Chest] "ventral part of thoracic region" EXACT [] | ||
| Comments: | editor note - FMA:24216 present in FMA1, but gone in subsequent versions | ||
| Alt_id: | UBERON:FMA_24216-MA_0000031 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0009569(subdivision of trunk) |
|---|---|
| part_of: | UBERON:0000915(thoracic segment of trunk) |
Children
| part of: | UBERON:0000310 (breast),UBERON:0002426 (chest muscle),UBERON:0005175 (chest organ) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10069-101I6 (diaphragm, fetal, donor1)
- 10080-102A8 (breast, adult, donor1)
- 10419-106C5 (breast carcinoma cell line:MDA-MB-453)
- 10482-107A5 (breast carcinoma cell line:MCF7)
- 10779-110G5
- 11327-117E4 (Adipocyte - breast, donor2)
- 11328-117E5 (Preadipocyte - breast, donor2)
- 11376-118A8 (Adipocyte - breast, donor1)
- 11467-119B9 (Preadipocyte - breast, donor1)
- 13031-139E7 (MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep1)
... further results Mouse (Mus musculus)
- 10069-101I6 (diaphragm, fetal, donor1)
- 10080-102A8 (breast, adult, donor1)
- 10419-106C5 (breast carcinoma cell line:MDA-MB-453)
- 10482-107A5 (breast carcinoma cell line:MCF7)
- 10779-110G5
- 11327-117E4 (Adipocyte - breast, donor2)
- 11328-117E5 (Preadipocyte - breast, donor2)
- 11376-118A8 (Adipocyte - breast, donor1)
- 11467-119B9 (Preadipocyte - breast, donor1)
- 13031-139E7 (MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001443 (chest), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.65e-72 | FFCP PHASE1:Hg19::chr17:74574500..74574512,-#_fb3e6838e91502a4acb72e2e80565e2d | p@chr17:74574500..74574512, - |
| 6.65e-72 | FFCP PHASE2:Hg19::chr17:74574500..74574512,-#_fb3e6838e91502a4acb72e2e80565e2d | p@chr17:74574500..74574512, - |
| 3.91e-58 | FFCP PHASE2:Mm9::chr17:67043365..67043374,-#_5c3efc2bb2e5910629a7c4f1868764bb | p17@Ptprm |
| 3.91e-58 | FFCP PHASE1:Mm9::chr17:67043365..67043374,-#_5c3efc2bb2e5910629a7c4f1868764bb | p17@Ptprm |
| 2.16e-54 | FFCP PHASE2:Hg19::chr12:3324464..3324485,+#_9512dfbdbf13040af2d59bc4cc093ab3 | p4@TSPAN9 |
| 2.16e-54 | FFCP PHASE2:Hg19::chr10:9012128..9012139,+#_9512dfbdbf13040af2d59bc4cc093ab3 | p2@ENST00000456526 |
| 2.16e-54 | FFCP PHASE2:Hg19::chr21:41756567..41756583,-#_9512dfbdbf13040af2d59bc4cc093ab3 | p@chr21:41756567..41756583, - |
| 2.16e-54 | FFCP PHASE2:Hg19::chr9:83986187..83986191,-#_9512dfbdbf13040af2d59bc4cc093ab3 | p@chr9:83986187..83986191, - |
| 2.16e-54 | FFCP PHASE2:Hg19::chr10:8904309..8904317,+#_9512dfbdbf13040af2d59bc4cc093ab3 | p@chr10:8904309..8904317, + |
| 2.16e-54 | FFCP PHASE1:Hg19::chr10:8910201..8910211,+#_9512dfbdbf13040af2d59bc4cc093ab3 | p@chr10:8910201..8910211, + |
| 2.16e-54 | FFCP PHASE1:Hg19::chr10:19498507..19498511,+#_9512dfbdbf13040af2d59bc4cc093ab3 | p@chr10:19498507..19498511, + |
| 2.16e-54 | FFCP PHASE1:Hg19::chr21:41711178..41711186,-#_9512dfbdbf13040af2d59bc4cc093ab3 | p@chr21:41711178..41711186, - |
| 2.16e-54 | FFCP PHASE2:Hg19::chr10:19498507..19498511,+#_9512dfbdbf13040af2d59bc4cc093ab3 | p@chr10:19498507..19498511, + |
| 2.16e-54 | FFCP PHASE1:Hg19::chr10:9012087..9012100,+#_9512dfbdbf13040af2d59bc4cc093ab3 | p1@ENST00000456526 |
| 2.16e-54 | FFCP PHASE2:Hg19::chr10:8910201..8910211,+#_9512dfbdbf13040af2d59bc4cc093ab3 | p@chr10:8910201..8910211, + |
| 2.16e-54 | FFCP PHASE2:Hg19::chr21:41711178..41711186,-#_9512dfbdbf13040af2d59bc4cc093ab3 | p@chr21:41711178..41711186, - |
| 2.16e-54 | FFCP PHASE1:Hg19::chr10:19498541..19498551,+#_9512dfbdbf13040af2d59bc4cc093ab3 | p@chr10:19498541..19498551, + |
| 2.16e-54 | FFCP PHASE1:Hg19::chr21:41755024..41755027,+#_9512dfbdbf13040af2d59bc4cc093ab3 | p2@DSCAM-AS1 |
| 2.16e-54 | FFCP PHASE2:Hg19::chr10:19498541..19498551,+#_9512dfbdbf13040af2d59bc4cc093ab3 | p@chr10:19498541..19498551, + |
| 2.16e-54 | FFCP PHASE2:Hg19::chr10:9012087..9012100,+#_9512dfbdbf13040af2d59bc4cc093ab3 | p1@ENST00000456526 |
| 2.16e-54 | FFCP PHASE2:Hg19::chr21:41755024..41755027,+#_9512dfbdbf13040af2d59bc4cc093ab3 | p2@DSCAM-AS1 |
| 2.16e-54 | FFCP PHASE1:Hg19::chr10:19498568..19498573,+#_9512dfbdbf13040af2d59bc4cc093ab3 | p@chr10:19498568..19498573, + |
| 2.16e-54 | FFCP PHASE1:Hg19::chr21:41755185..41755210,+#_9512dfbdbf13040af2d59bc4cc093ab3 | p1@DSCAM-AS1 |
| 2.16e-54 | FFCP PHASE1:Hg19::chr11:85539944..85539950,+#_9512dfbdbf13040af2d59bc4cc093ab3 | p@chr11:85539944..85539950, + |
| 2.16e-54 | FFCP PHASE2:Hg19::chr10:19498568..19498573,+#_9512dfbdbf13040af2d59bc4cc093ab3 | p@chr10:19498568..19498573, + |
| 2.16e-54 | FFCP PHASE1:Hg19::chr9:83986187..83986191,-#_9512dfbdbf13040af2d59bc4cc093ab3 | p@chr9:83986187..83986191, - |
| 2.16e-54 | FFCP PHASE1:Hg19::chr10:9012128..9012139,+#_9512dfbdbf13040af2d59bc4cc093ab3 | p2@ENST00000456526 |
| 2.16e-54 | FFCP PHASE1:Hg19::chr10:19498407..19498415,+#_9512dfbdbf13040af2d59bc4cc093ab3 | p@chr10:19498407..19498415, + |
| 2.16e-54 | FFCP PHASE1:Hg19::chr17:38843592..38843605,+#_9512dfbdbf13040af2d59bc4cc093ab3 | p@chr17:38843592..38843605, + |
| 2.16e-54 | FFCP PHASE2:Hg19::chr21:41755185..41755210,+#_9512dfbdbf13040af2d59bc4cc093ab3 | p1@DSCAM-AS1 |
| 2.16e-54 | FFCP PHASE2:Hg19::chr11:85539944..85539950,+#_9512dfbdbf13040af2d59bc4cc093ab3 | p@chr11:85539944..85539950, + |
| 2.16e-54 | FFCP PHASE2:Hg19::chr10:19498407..19498415,+#_9512dfbdbf13040af2d59bc4cc093ab3 | p@chr10:19498407..19498415, + |
| 2.16e-54 | FFCP PHASE1:Hg19::chr12:3324464..3324485,+#_9512dfbdbf13040af2d59bc4cc093ab3 | p4@TSPAN9 |
| 2.16e-54 | FFCP PHASE1:Hg19::chr21:41756567..41756583,-#_9512dfbdbf13040af2d59bc4cc093ab3 | p@chr21:41756567..41756583, - |
| 2.16e-54 | FFCP PHASE1:Hg19::chr10:8904309..8904317,+#_9512dfbdbf13040af2d59bc4cc093ab3 | p@chr10:8904309..8904317, + |
| 2.16e-54 | FFCP PHASE2:Hg19::chr17:38843592..38843605,+#_9512dfbdbf13040af2d59bc4cc093ab3 | p@chr17:38843592..38843605, + |
| 2.24e-48 | FFCP PHASE1:Hg19::chr3:129226514..129226531,+#_1c5f0fdaf9dea299dc5296e5ee2b5719 | p@chr3:129226514..129226531, + |
| 2.24e-48 | FFCP PHASE2:Hg19::chr3:129226514..129226531,+#_1c5f0fdaf9dea299dc5296e5ee2b5719 | p@chr3:129226514..129226531, + |
| 6.34e-47 | FFCP PHASE2:Mm9::chr6:14851605..14851614,+#_709dbebd8a04d9514bf671c9d6a845ac | p17@Foxp2 |
| 6.34e-47 | FFCP PHASE1:Mm9::chr6:14851605..14851614,+#_709dbebd8a04d9514bf671c9d6a845ac | p17@Foxp2 |
| 4.08e-45 | FFCP PHASE2:Hg19::chr19:18899082..18899091,+#_e9848b17ff69d7fcfb21207442c54aba | p@chr19:18899082..18899091, + |
| 4.08e-45 | FFCP PHASE1:Hg19::chr19:18899082..18899091,+#_e9848b17ff69d7fcfb21207442c54aba | p@chr19:18899082..18899091, + |
| 1.34e-41 | FFCP PHASE1:Hg19::chr1:240577171..240577181,-#_34790900f10228b306d7896af09439ad | p@chr1:240577171..240577181, - |
| 1.34e-41 | FFCP PHASE2:Hg19::chr1:240577171..240577181,-#_34790900f10228b306d7896af09439ad | p@chr1:240577171..240577181, - |
| 1.83e-41 | FFCP PHASE1:Hg19::chr2:11679852..11679866,+#_ec81add221dde6524b01bf6b52a13841 | p18@GREB1 |
| 1.83e-41 | FFCP PHASE2:Hg19::chr2:11679852..11679866,+#_ec81add221dde6524b01bf6b52a13841 | p18@GREB1 |
| 4.07e-41 | FFCP PHASE2:Hg19::chr20:52482691..52482707,-#_135b4c813336321e8b2df603921fd1f2 | p@chr20:52482691..52482707, - |
| 4.07e-41 | FFCP PHASE2:Hg19::chr13:23733194..23733206,+#_135b4c813336321e8b2df603921fd1f2 | p@chr13:23733194..23733206, + |
| 4.07e-41 | FFCP PHASE1:Hg19::chr17:59469536..59469541,+#_135b4c813336321e8b2df603921fd1f2 | p@chr17:59469536..59469541, + |
| 4.07e-41 | FFCP PHASE2:Hg19::chr17:59469536..59469541,+#_135b4c813336321e8b2df603921fd1f2 | p@chr17:59469536..59469541, + |
| 4.07e-41 | FFCP PHASE1:Hg19::chr13:23733194..23733206,+#_135b4c813336321e8b2df603921fd1f2 | p@chr13:23733194..23733206, + |
| 4.07e-41 | FFCP PHASE1:Hg19::chr20:52482691..52482707,-#_135b4c813336321e8b2df603921fd1f2 | p@chr20:52482691..52482707, - |
| 4.67e-41 | FFCP PHASE1:Hg19::chr5:177505250..177505293,-#_03707587578108419a0a859c9052ccc1 | p@chr5:177505250..177505293, - |
| 4.67e-41 | FFCP PHASE2:Hg19::chr5:177505250..177505293,-#_03707587578108419a0a859c9052ccc1 | p@chr5:177505250..177505293, - |
| 1.6e-37 | FFCP PHASE1:Hg19::chr15:81242191..81242201,+#_65da21d9d3ec1b54ba1c80012edf8d25 | p19@KIAA1199 |
| 1.6e-37 | FFCP PHASE2:Hg19::chr15:81242191..81242201,+#_65da21d9d3ec1b54ba1c80012edf8d25 | p19@KIAA1199 |
| 6.8e-37 | FFCP PHASE1:Hg19::chr10:19498455..19498482,+#_bea62546c05569064e83bbf44ae034c5 | p@chr10:19498455..19498482, + |
| 6.8e-37 | FFCP PHASE1:Hg19::chr19:15674459..15674486,+#_bea62546c05569064e83bbf44ae034c5 | p@chr19:15674459..15674486, + |
| 6.8e-37 | FFCP PHASE2:Hg19::chr10:19498455..19498482,+#_bea62546c05569064e83bbf44ae034c5 | p@chr10:19498455..19498482, + |
| 6.8e-37 | FFCP PHASE1:Hg19::chr17:65990543..65990553,-#_bea62546c05569064e83bbf44ae034c5 | p@chr17:65990543..65990553, - |
| 6.8e-37 | FFCP PHASE2:Hg19::chr19:15674459..15674486,+#_bea62546c05569064e83bbf44ae034c5 | p@chr19:15674459..15674486, + |
| 6.8e-37 | FFCP PHASE2:Hg19::chr17:65990543..65990553,-#_bea62546c05569064e83bbf44ae034c5 | p@chr17:65990543..65990553, - |
| 6.8e-37 | FFCP PHASE1:Hg19::chr10:9012105..9012111,+#_bea62546c05569064e83bbf44ae034c5 | p3@ENST00000456526 |
| 6.8e-37 | FFCP PHASE1:Hg19::chr1:96504230..96504238,-#_bea62546c05569064e83bbf44ae034c5 | p@chr1:96504230..96504238, - |
| 6.8e-37 | FFCP PHASE1:Hg19::chr13:23583578..23583586,+#_bea62546c05569064e83bbf44ae034c5 | p@chr13:23583578..23583586, + |
| 6.8e-37 | FFCP PHASE2:Hg19::chr10:9012105..9012111,+#_bea62546c05569064e83bbf44ae034c5 | p3@ENST00000456526 |
| 6.8e-37 | FFCP PHASE2:Hg19::chr1:96504230..96504238,-#_bea62546c05569064e83bbf44ae034c5 | p@chr1:96504230..96504238, - |
| 6.8e-37 | FFCP PHASE2:Hg19::chr13:23583578..23583586,+#_bea62546c05569064e83bbf44ae034c5 | p@chr13:23583578..23583586, + |
| 1.36e-36 | FFCP PHASE1:Hg19::chr3:129226494..129226510,+#_4be95240afeeae0b71eb0b8ebbb3f2a9 | p@chr3:129226494..129226510, + |
| 1.36e-36 | FFCP PHASE2:Hg19::chr3:129226494..129226510,+#_4be95240afeeae0b71eb0b8ebbb3f2a9 | p@chr3:129226494..129226510, + |
| 1.63e-36 | FFCP PHASE1:Hg19::chr14:38064198..38064200,-#_cd6d415036279bc3d1c030b7af5823e8 | p11@FOXA1 |
| 1.63e-36 | FFCP PHASE2:Hg19::chr14:38064198..38064200,-#_cd6d415036279bc3d1c030b7af5823e8 | p11@FOXA1 |
| 2.15e-36 | FFCP PHASE1:Hg19::chr15:39486488..39486494,-#_2b7f12239e2fd2f91b7356914488f34a | p6@ENST00000560743 |
| 2.15e-36 | FFCP PHASE1:Hg19::chr7:134430175..134430178,+#_2b7f12239e2fd2f91b7356914488f34a | p85@CALD1 |
| 2.15e-36 | FFCP PHASE2:Hg19::chr15:39486488..39486494,-#_2b7f12239e2fd2f91b7356914488f34a | p6@ENST00000560743 |
| 2.15e-36 | FFCP PHASE2:Hg19::chr7:134430175..134430178,+#_2b7f12239e2fd2f91b7356914488f34a | p85@CALD1 |
| 2.35e-36 | FFCP PHASE1:Hg19::chr11:72493920..72493932,-#_b1e8cc854055a7118226d3f315a42506 | p19@STARD10 |
| 2.35e-36 | FFCP PHASE2:Hg19::chr11:72493920..72493932,-#_b1e8cc854055a7118226d3f315a42506 | p19@STARD10 |
| 5.79e-35 | FFCP PHASE1:Mm9::chr11:85703335..85703350,+#_43049ecbe42fa2d6368b3da55d410185 | p4@Tbx4 |
| 5.79e-35 | FFCP PHASE2:Mm9::chr11:85703335..85703350,+#_43049ecbe42fa2d6368b3da55d410185 | p4@Tbx4 |
| 6.42e-35 | FFCP PHASE1:Hg19::chr7:73483140..73483149,+#_d6d1f9724a7139d3baddbd2545b4607d | p31@ELN |
| 6.42e-35 | FFCP PHASE2:Hg19::chr7:73483140..73483149,+#_d6d1f9724a7139d3baddbd2545b4607d | p31@ELN |
| 1.29e-34 | FFCP PHASE1:Hg19::chr19:18897380..18897392,+#_7151d6af6bda2dc9d023c4d1f54a3d55 | p@chr19:18897380..18897392, + |
| 1.29e-34 | FFCP PHASE2:Hg19::chr19:18897380..18897392,+#_7151d6af6bda2dc9d023c4d1f54a3d55 | p@chr19:18897380..18897392, + |
| 2.26e-33 | FFCP PHASE2:Mm9::chr11:85589157..85589190,-#_c752305db76f08e8276358a6a34fb630 | p1@ENSMUST00000134305 |
| 2.26e-33 | FFCP PHASE1:Mm9::chr11:85589157..85589190,-#_c752305db76f08e8276358a6a34fb630 | p1@ENSMUST00000134305 |
| 3.85e-33 | FFCP PHASE1:Hg19::chr8:91871545..91871568,-#_cd9bce50a5ae7331f94514774f2593f0 | p3@ENST00000517884 |
| 3.85e-33 | FFCP PHASE2:Hg19::chr8:91871545..91871568,-#_cd9bce50a5ae7331f94514774f2593f0 | p3@ENST00000517884 |
| 4.79e-33 | FFCP PHASE2:Hg19::chr19:18899427..18899432,-#_39161b8fae518d7385f45fead85b6baa | p@chr19:18899427..18899432, - |
| 4.79e-33 | FFCP PHASE1:Hg19::chr3:161089631..161089635,+#_39161b8fae518d7385f45fead85b6baa | p@chr3:161089631..161089635, + |
| 4.79e-33 | FFCP PHASE2:Hg19::chr3:161089631..161089635,+#_39161b8fae518d7385f45fead85b6baa | p@chr3:161089631..161089635, + |
| 4.79e-33 | FFCP PHASE1:Hg19::chr19:18899427..18899432,-#_39161b8fae518d7385f45fead85b6baa | p@chr19:18899427..18899432, - |
| 4.79e-33 | FFCP PHASE1:Hg19::chr11:66811898..66811900,-#_39161b8fae518d7385f45fead85b6baa | p@chr11:66811898..66811900, - |
| 4.79e-33 | FFCP PHASE2:Hg19::chr11:66811898..66811900,-#_39161b8fae518d7385f45fead85b6baa | p@chr11:66811898..66811900, - |
| 7.42e-33 | FFCP PHASE2:Hg19::chr15:88119982..88120003,+#_245c9841e32ddc2fcf9ce0371dc3dc6c | p2@LINC00052 |
| 7.42e-33 | FFCP PHASE1:Hg19::chr15:88119982..88120003,+#_245c9841e32ddc2fcf9ce0371dc3dc6c | p2@LINC00052 |
| 1.17e-32 | FFCP PHASE1:Hg19::chr10:8091813..8091823,+#_f8d94ee7d1fb11a8ef71dd106d41d552 | p@chr10:8091813..8091823, + |
| 1.17e-32 | FFCP PHASE2:Hg19::chr10:8091813..8091823,+#_f8d94ee7d1fb11a8ef71dd106d41d552 | p@chr10:8091813..8091823, + |
| 1.9e-32 | FFCP PHASE1:Hg19::chr1:6488281..6488301,+#_51dc4bdff9c985c71c1da2feddb77a48 | p@chr1:6488281..6488301, + |
| 1.9e-32 | FFCP PHASE2:Hg19::chr1:6488281..6488301,+#_51dc4bdff9c985c71c1da2feddb77a48 | p@chr1:6488281..6488301, + |
