UBERON:0010712: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=limb skeleton subdivision | |name=limb skeleton subdivision | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002101;;UBERON:0002091;;UBERON:0002101 | |part_of=UBERON:0002101;;UBERON:0002091;;UBERON:0002101 | ||
Latest revision as of 18:09, 12 September 2014
| Name: | limb skeleton subdivision | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Skeletal subdivision that is a segment of the limb skeleton." [VSAO:0005018, VSAO:NI] | ||
| Xrefs: |
| ||
| Comments: | Editor notes - note the distinction between this and skeleton of limb |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0010912(subdivision of skeleton) |
|---|---|
| part_of: | UBERON:0002101(limb),UBERON:0002091(appendicular skeleton),UBERON:0002101(limb) |
Children
| is a: | UBERON:0004381 (skeleton of limb) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 1350-25C3 (bone (os femoris), neonate N20)
- 1525-43A6 (bone (os femoris), neonate N16)
- 1985-43F5 (bone (os femoris), neonate N02)
- 56-12G2 (bone (os femoris), adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010712 (limb skeleton subdivision), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.4e-49 | FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_c7320ecea5c62d24fc50e902a3f24e88 | p26@Myo18a |
| 3.4e-49 | FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_c7320ecea5c62d24fc50e902a3f24e88 | p26@Myo18a |
| 4.96e-49 | FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_d9f977022243f29440fed2668b6fac85 | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_d9f977022243f29440fed2668b6fac85 | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_d9f977022243f29440fed2668b6fac85 | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_d9f977022243f29440fed2668b6fac85 | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_d9f977022243f29440fed2668b6fac85 | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_d9f977022243f29440fed2668b6fac85 | p@chr2:32482372..32482381, + |
| 3.15e-44 | FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_be3260ec839e15fade7bbb5df9fd5b9e | p@chr6:51525810..51525817, + |
| 3.15e-44 | FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_be3260ec839e15fade7bbb5df9fd5b9e | p@chr6:51525810..51525817, + |
| 9.78e-40 | FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_11fc135e6cc5248af693a4da0ad10a35 | p@chr19:4876870..4876880, - |
| 9.78e-40 | FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_11fc135e6cc5248af693a4da0ad10a35 | p@chr19:4876870..4876880, - |
| 1.15e-39 | FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_d1d5a1f9a38e9c7e2f643598c86cef03 | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_d1d5a1f9a38e9c7e2f643598c86cef03 | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_d1d5a1f9a38e9c7e2f643598c86cef03 | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_d1d5a1f9a38e9c7e2f643598c86cef03 | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_d1d5a1f9a38e9c7e2f643598c86cef03 | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_d1d5a1f9a38e9c7e2f643598c86cef03 | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_d1d5a1f9a38e9c7e2f643598c86cef03 | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_d1d5a1f9a38e9c7e2f643598c86cef03 | p@chr11:67063327..67063335, + |
| 1.55e-39 | FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_8a4175d69c5ddf215e70af5e922ea26f | p@chr1:174143249..174143260, - |
| 1.55e-39 | FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_8a4175d69c5ddf215e70af5e922ea26f | p@chr1:174143249..174143260, - |
| 3.03e-39 | FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_924be66ed467c6a1285bb63331a2ce97 | p@chr6:51525869..51525891, + |
| 3.03e-39 | FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_924be66ed467c6a1285bb63331a2ce97 | p@chr6:51525869..51525891, + |
| 9.31e-39 | FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_6bff88513b2ded08fd5b31b1f470277b | p3@Asb16 |
| 9.31e-39 | FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_6bff88513b2ded08fd5b31b1f470277b | p3@Asb16 |
| 2.41e-35 | FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_fc9717c8cf6269cbc1178366f0791ebb | p@chr7:133604286..133604297, - |
| 2.41e-35 | FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_fc9717c8cf6269cbc1178366f0791ebb | p@chr7:133604286..133604297, - |
| 2.95e-35 | FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_0291754724ac881b045517b0cef2f866 | p5@Pla2g5 |
| 2.95e-35 | FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_0291754724ac881b045517b0cef2f866 | p5@Pla2g5 |
| 9.53e-34 | FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_c40c9bebbed150359ed3c19f97194c60 | p2@uc009mdq.1 |
| 9.53e-34 | FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_c40c9bebbed150359ed3c19f97194c60 | p2@uc009mdq.1 |
| 1.23e-33 | FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_e6bf2cc220868f6d12762fca73945f55 | p3@Mmp9 |
| 1.23e-33 | FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_e6bf2cc220868f6d12762fca73945f55 | p3@Mmp9 |
| 1.58e-33 | FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_0600614bf5b054e28704e645ebdd455d | p2@Oscar |
| 1.58e-33 | FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_0600614bf5b054e28704e645ebdd455d | p@chr1:166815111..166815121, - |
| 1.58e-33 | FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_0600614bf5b054e28704e645ebdd455d | p2@Oscar |
| 1.58e-33 | FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_0600614bf5b054e28704e645ebdd455d | p@chr1:166815111..166815121, - |
| 2.04e-33 | FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_2d6b4c2b919a626b677c291308d87580 | p@chr11:75409652..75409664, + |
| 2.04e-33 | FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_2d6b4c2b919a626b677c291308d87580 | p4@Lipc |
| 2.04e-33 | FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_2d6b4c2b919a626b677c291308d87580 | p4@Lipc |
| 2.04e-33 | FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_2d6b4c2b919a626b677c291308d87580 | p@chr11:75409652..75409664, + |
| 3.38e-33 | FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_36a86fbc637f19751f3dedfd20b04305 | p6@Sp7 |
| 3.38e-33 | FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_36a86fbc637f19751f3dedfd20b04305 | p6@Sp7 |
| 7.17e-33 | FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_b4779e588543a75f0e46693caa3263b1 | p@chr18:76271498..76271508, + |
| 7.17e-33 | FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_b4779e588543a75f0e46693caa3263b1 | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_b4779e588543a75f0e46693caa3263b1 | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_b4779e588543a75f0e46693caa3263b1 | p@chr18:76271498..76271508, + |
| 2.67e-30 | FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_f9a48fcbfa0528ed9d87007314fa7d3d | p@chr2:32482387..32482399, + |
| 2.67e-30 | FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_f9a48fcbfa0528ed9d87007314fa7d3d | p@chr2:32482387..32482399, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_5b907ec8b6913e70962b716749ca70bd | p@chr15:58649683..58649688, - |
| 1.1e-29 | FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_5b907ec8b6913e70962b716749ca70bd | p@chr12:70396969..70396979, + |
| 1.1e-29 | FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_5b907ec8b6913e70962b716749ca70bd | p@chr15:58649683..58649688, - |
| 1.1e-29 | FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_5b907ec8b6913e70962b716749ca70bd | p@chr12:70396969..70396979, + |
| 1.46e-29 | FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_f3f65106c4d8ade9b48dae09c6646690 | p@chr7:133590998..133591009, - |
| 1.46e-29 | FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_f3f65106c4d8ade9b48dae09c6646690 | p@chr7:133590998..133591009, - |
| 1.73e-29 | FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_f6db2b261f17425aa73783f69595a60a | p2@Myoz3 |
| 1.73e-29 | FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_f6db2b261f17425aa73783f69595a60a | p2@Myoz3 |
| 2.42e-29 | FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_ff2de9ad756d3fb9a88e3c7ca552b0e4 | p2@Myh4 |
| 2.42e-29 | FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_ff2de9ad756d3fb9a88e3c7ca552b0e4 | p2@Myh4 |
| 7.46e-29 | FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_c8ec2c4bb1dc805b589cfb6e51e0c156 | p@chr1:57155729..57155740, - |
| 7.46e-29 | FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_c8ec2c4bb1dc805b589cfb6e51e0c156 | p@chr1:57155729..57155740, - |
| 9.26e-29 | FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_8a02f18ec6c4b90d821db2db1ff47866 | p1@Msmp |
| 9.26e-29 | FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_8a02f18ec6c4b90d821db2db1ff47866 | p@chr11:67056544..67056589, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_8a02f18ec6c4b90d821db2db1ff47866 | p@chr11:67056544..67056589, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_8a02f18ec6c4b90d821db2db1ff47866 | p1@Msmp |
| 1.15e-28 | FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_ddc572153c66564bba564e564258f001 | p@chr6:90552017..90552024, + |
| 1.15e-28 | FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_ddc572153c66564bba564e564258f001 | p@chr6:90552017..90552024, + |
| 1.15e-28 | FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_ddc572153c66564bba564e564258f001 | p@chrY:2858251..2858257, + |
| 1.15e-28 | FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_ddc572153c66564bba564e564258f001 | p@chrY:2858251..2858257, + |
| 1.43e-28 | FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_1ce40279c7473f67fd36185227c8d0ce | p@chr6:34436258..34436292, + |
| 1.43e-28 | FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_1ce40279c7473f67fd36185227c8d0ce | p@chr6:34436258..34436292, + |
| 2.2e-28 | FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_7ef0f577ef2a9e6c05662827f9415d02 | p@chr11:67069796..67069817, - |
| 2.2e-28 | FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_7ef0f577ef2a9e6c05662827f9415d02 | p@chr11:67069796..67069817, - |
| 2.72e-28 | FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_999d6e0d7251ce6c04ed7663244dd02e | p@chr8:107702369..107702386, + |
| 2.72e-28 | FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_999d6e0d7251ce6c04ed7663244dd02e | p@chr8:107702369..107702386, + |
| 3.45e-28 | FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_1d66daf77b27a7755c5030f2dc0751f1 | p1@Siglec15 |
| 3.45e-28 | FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_1d66daf77b27a7755c5030f2dc0751f1 | p1@Siglec15 |
| 6.5e-28 | FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_1922700cb51f3395bd603bd342d61fb8 | p6@Atp2a1 |
| 6.5e-28 | FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_1922700cb51f3395bd603bd342d61fb8 | p6@Atp2a1 |
| 8.9e-28 | FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_7e893380de1f2cac6c587b18059d269a | p7@Atp2a1 |
| 8.9e-28 | FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_7e893380de1f2cac6c587b18059d269a | p7@Atp2a1 |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_19293badd4f2e50f7616c69c1781e942 | p@chr7:133600635..133600663, + |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_19293badd4f2e50f7616c69c1781e942 | p@chr7:133600635..133600663, + |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_19293badd4f2e50f7616c69c1781e942 | p@chr7:133592162..133592188, - |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_19293badd4f2e50f7616c69c1781e942 | p@chr7:133592162..133592188, - |
| 6.75e-27 | FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_cda64612247ed778ef12921a5388a7d7 | p4@Sgca |
| 6.75e-27 | FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_cda64612247ed778ef12921a5388a7d7 | p4@Sgca |
| 1.66e-26 | FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_19158f4620d47d602ec085b4dae91d75 | p1@Mepe |
| 1.66e-26 | FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_19158f4620d47d602ec085b4dae91d75 | p1@Mepe |
| 3.47e-26 | FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_5ed2e37bca8d1823b31481d8f61fb404 | p2@Tm4sf19 |
| 3.47e-26 | FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_5ed2e37bca8d1823b31481d8f61fb404 | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_5ed2e37bca8d1823b31481d8f61fb404 | p2@Tm4sf19 |
| 3.47e-26 | FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_5ed2e37bca8d1823b31481d8f61fb404 | p@chr12:81581216..81581231, + |
| 1.12e-25 | FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_22970f7ff8f3ab78e5c5bf6f12917f1c | p@chr15:97806574..97806585, - |
| 1.12e-25 | FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_22970f7ff8f3ab78e5c5bf6f12917f1c | p@chr15:97806574..97806585, - |
| 1.12e-25 | FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_22970f7ff8f3ab78e5c5bf6f12917f1c | p5@Col11a2 |
| 1.12e-25 | FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_22970f7ff8f3ab78e5c5bf6f12917f1c | p5@Col11a2 |
| 1.36e-25 | FFCP PHASE2:Mm9::chr18:78254174..78254185,-#_56198ab328efc6ecf901325d3a99e993 | p2@Siglec15 |
| 1.36e-25 | FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_56198ab328efc6ecf901325d3a99e993 | p@chr2:180890942..180890956, - |
