FFCP PHASE1:Hg19::chr6:34208414..34208429,+: Difference between revisions
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=3159 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | ||
|HGNC= | |HGNC=5010 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt= |
Latest revision as of 08:53, 18 September 2015
Short description: | p16@HMGA1 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_HMGA1_5end |
Coexpression cluster: | C133_signet_gall_small_kidney_colon_ductal_adenocarcinoma |
Association with transcript: | -84bp_to_uc003ojd.2_5end |
EntrezGene: | HMGA1 |
HGNC: | 5010 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p16@HMGA1 |
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5.0
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the pulmonary artery | 3.99e-50 | 1 |
epithelial cell of pancreas | 1.29e-13 | 4 |
vein endothelial cell | 1.32e-09 | 6 |
Showing 1 to 3 of 3 entries
Ontology term | p-value | n |
---|---|---|
mixed ectoderm/mesoderm/endoderm-derived structure | 7.14e-26 | 2 |
developing epithelial placode | 7.14e-26 | 2 |
respiratory system arterial blood vessel | 7.14e-26 | 2 |
respiratory system blood vessel | 7.14e-26 | 2 |
respiratory system artery | 7.14e-26 | 2 |
head blood vessel | 7.14e-26 | 2 |
pulmonary artery | 7.14e-26 | 2 |
pulmonary vascular system | 7.14e-26 | 2 |
pharyngeal vasculature | 7.14e-26 | 2 |
truncus arteriosus | 7.14e-26 | 2 |
Showing 1 to 10 of 23 entries
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 4.32e-26 | 2 |
tubular adenocarcinoma | 9.18e-26 | 2 |
pancreatic cancer | 1.29e-13 | 4 |
endocrine gland cancer | 1.57e-09 | 6 |
adenocarcinoma | 5.49e-09 | 25 |
Showing 1 to 5 of 5 entries