Personal tools

UBERON:0001285: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0001285 |name=nephron |namespace= |def="The basic functional unit of the kidney. its chief function is to regulate the concentration of water and solub...")
 
No edit summary
Line 21: Line 21:
|part_of=UBERON:0007684
|part_of=UBERON:0007684
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
}}
}}

Revision as of 17:12, 15 June 2012

Name:nephron
Definition:"The basic functional unit of the kidney. its chief function is to regulate the concentration of water and soluble substances like sodium salts by filtering the blood, reabsorbing what is needed and excreting the rest as urine. A nephron eliminates wastes from the body, regulates blood volume and blood pressure, controls levels of electrolytes and metabolites, and regulates blood pH. Its functions are vital to life and are regulated by the endocrine system by hormones such as antidiuretic hormone, aldosterone, and parathyroid hormone.[WP]" [PMID:9268568, Wikipedia:Nephron]
Xrefs:
links:

BTO:0000924
EMAPA:28491
EV:0100384
FMA:17640
GAID:428
[ 200px-Gray1128.png 200px-Gray1128.png]
MA:0000375
MESH:A.05.810.453.736
ncithesaurus:Nephron
SCTID:361337001

ZFA:0005282
Synonyms: "mature nephron" NARROW [EMAPA:28491]
Comments:Editor note: kidney terms require review for cross-vertebrate compatibility and developmental relationships. Taxon notes: In the avian kidney, three types of nephron are identified: mammalian-type nephrons with long and short loops of Henle, and reptilian type nephrons (Gambaryan, 1992)[GO Kidney]
Alt_id: UBERON:FMA_17640-MA_0000375-XAO_0000145
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000064(organ part),UBERON:0004120(mesoderm-derived structure),UBERON:0006554(urinary system structure)
develops_from:UBERON:0003220(metanephric mesenchyme),UBERON:0004208(nephrogenic mesenchyme)
part_of:UBERON:0007684(uriniferous tubule)



Children

part of:UBERON:0001229 (renal corpuscle),UBERON:0001231 (nephron tubule),UBERON:0004198 (comma-shaped body),UBERON:0004211 (nephron epithelium),CL:1000449 (epithelial cell of nephron)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001285 (nephron), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data