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UBERON:0001558: Difference between revisions

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Revision as of 17:12, 15 June 2012

Name:lower respiratory tract
Definition:"Subdivision of respiratory system which consists of the tracheobronchial tree, right lung and left lung.[FMA]" [FMA:FMA, Wikipedia:Lower_respiratory_tract]
Xrefs:
links:

EHDAA2:0001036
EMAPA:16738
FMA:45662
[1]
MA:0000435
OpenCyc:Mx4rQRqjUgAKEdyHxgDggVfs8g
SCTID:281488008

VHOG:0000382
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_45662-MA_0000435
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000072(segment of respiratory tract)



Children

part of:UBERON:0000170 (pair of lungs),CL:0002632 (epithelial cell of lower respiratory tract),UBERON:0004815 (lower respiratory tract epithelium),UBERON:0007196 (tracheobronchial tree)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001558 (lower respiratory tract), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data