Personal tools

Coexpression cluster:C85: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 3: Line 3:
|gostat_on_coexpression_clusters=GO:0007399!nervous system development!0.000171765853094219!1742;4760;8929;64377;3196;4808;4440$GO:0048731!system development!0.0017186126688088!1742;4760;8929;2139;64377;3196;4808;4440$GO:0007275!multicellular organismal development!0.00189814892299092!4760;1653;8929;2139;64377;3196;1742;4440;4808$GO:0032502!developmental process!0.00343797603353163!4760;1653;8929;2139;64377;3196;1742;51454;4440;4808$GO:0048856!anatomical structure development!0.00343797603353163!1742;4760;8929;2139;64377;3196;4808;4440$GO:0032501!multicellular organismal process!0.00780958209236935!6752;4760;1653;8929;2139;64377;3196;1742;4440;4808$GO:0010468!regulation of gene expression!0.00780958209236935!4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0031323!regulation of cellular metabolic process!0.00848662852663684!4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0019222!regulation of metabolic process!0.0118067418075942!4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0005737!cytoplasm!0.0143010395208181!4093;23426;4760;2139;64377;3196;94005;54905;1742;51454;160287;4440;118429$GO:0045449!regulation of transcription!0.0164689418232576!4093;23426;4760;8929;2139;84969;3196;222894;4808$GO:0007417!central nervous system development!0.0164689418232576!4760;64377;4808$GO:0019219!regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process!0.0164689418232576!4093;23426;4760;8929;2139;84969;3196;222894;4808$GO:0007501!mesodermal cell fate specification!0.0164689418232576!2139$GO:0043231!intracellular membrane-bound organelle!0.0164689418232576!4093;23426;4760;8929;2139;64377;84969;3196;94005;222894;54905;118429;4440;4808$GO:0043227!membrane-bound organelle!0.0164689418232576!4093;23426;4760;8929;2139;64377;84969;3196;94005;222894;54905;118429;4440;4808$GO:0006350!transcription!0.0164689418232576!4093;23426;4760;8929;2139;84969;3196;222894;4808$GO:0050794!regulation of cellular process!0.018115554288896!6752;4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0045165!cell fate commitment!0.0222460872433!4760;2139$GO:0048869!cellular developmental process!0.0222460872433!4760;51454;8929;2139;3196;4808$GO:0030154!cell differentiation!0.0222460872433!4760;51454;8929;2139;3196;4808$GO:0016070!RNA metabolic process!0.0222460872433!4093;23426;4760;1653;8929;2139;84969;3196;4808$GO:0016167!glial cell line-derived neurotrophic factor receptor activity!0.0222460872433!2675$GO:0050774!negative regulation of dendrite morphogenesis!0.0222460872433!3196$GO:0006355!regulation of transcription, DNA-dependent!0.0235101997012121!4093;23426;4760;8929;2139;84969;3196;4808$GO:0050789!regulation of biological process!0.0236139168726967!6752;4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0006351!transcription, DNA-dependent!0.0247288604075228!4093;23426;4760;8929;2139;84969;3196;4808$GO:0032774!RNA biosynthetic process!0.0247288604075228!4093;23426;4760;8929;2139;84969;3196;4808$GO:0044424!intracellular part!0.0262669635116243!8929;2139;84969;3196;94005;4808;118429;4093;23426;4760;64377;222894;1742;54905;160287;51454;4440$GO:0048814!regulation of dendrite morphogenesis!0.0266862685324948!3196$GO:0043229!intracellular organelle!0.0286528967531669!4093;23426;4760;8929;2139;64377;84969;3196;94005;222894;54905;1742;4808;118429;4440$GO:0043226!organelle!0.0286528967531669!4093;23426;4760;8929;2139;64377;84969;3196;94005;222894;54905;1742;4808;118429;4440$GO:0010467!gene expression!0.0286528967531669!4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0008266!poly(U) binding!0.0296413736381096!4440$GO:0050773!regulation of dendrite development!0.0296413736381096!3196$GO:0048813!dendrite morphogenesis!0.0296413736381096!3196$GO:0005783!endoplasmic reticulum!0.0310095440878635!23426;54905;94005;118429$GO:0065007!biological regulation!0.0310095440878635!6752;4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0001537!N-acetylgalactosamine 4-O-sulfotransferase activity!0.0310095440878635!64377$GO:0006911!phagocytosis, engulfment!0.0310095440878635!51454$GO:0004994!somatostatin receptor activity!0.0310095440878635!6752$GO:0003923!GPI-anchor transamidase activity!0.0310095440878635!94005$GO:0016255!attachment of GPI anchor to protein!0.0310095440878635!94005$GO:0007617!mating behavior!0.0348760096553614!4808$GO:0019098!reproductive behavior!0.0348760096553614!4808$GO:0006139!nucleobase, nucleoside, nucleotide and nucleic acid metabolic process!0.0348760096553614!4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0005515!protein binding!0.0363028831603493!6752;4093;23426;4760;3208;1653;124857;8929;3196;94005;1742;51454;118429$GO:0001710!mesodermal cell fate commitment!0.0374235450638049!2139$GO:0048333!mesodermal cell differentiation!0.0374235450638049!2139$GO:0045211!postsynaptic membrane!0.0374235450638049!23426;1742$GO:0042765!GPI-anchor transamidase complex!0.0417900332832!94005$GO:0044456!synapse part!0.0418186566332716!23426;1742$GO:0004459!L-lactate dehydrogenase activity!0.0435798547184848!160287$GO:0019642!anaerobic glycolysis!0.0435798547184848!160287$GO:0005844!polysome!0.0435798547184848!4440$GO:0004457!lactate dehydrogenase activity!0.0475412938402424!160287
|gostat_on_coexpression_clusters=GO:0007399!nervous system development!0.000171765853094219!1742;4760;8929;64377;3196;4808;4440$GO:0048731!system development!0.0017186126688088!1742;4760;8929;2139;64377;3196;4808;4440$GO:0007275!multicellular organismal development!0.00189814892299092!4760;1653;8929;2139;64377;3196;1742;4440;4808$GO:0032502!developmental process!0.00343797603353163!4760;1653;8929;2139;64377;3196;1742;51454;4440;4808$GO:0048856!anatomical structure development!0.00343797603353163!1742;4760;8929;2139;64377;3196;4808;4440$GO:0032501!multicellular organismal process!0.00780958209236935!6752;4760;1653;8929;2139;64377;3196;1742;4440;4808$GO:0010468!regulation of gene expression!0.00780958209236935!4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0031323!regulation of cellular metabolic process!0.00848662852663684!4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0019222!regulation of metabolic process!0.0118067418075942!4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0005737!cytoplasm!0.0143010395208181!4093;23426;4760;2139;64377;3196;94005;54905;1742;51454;160287;4440;118429$GO:0045449!regulation of transcription!0.0164689418232576!4093;23426;4760;8929;2139;84969;3196;222894;4808$GO:0007417!central nervous system development!0.0164689418232576!4760;64377;4808$GO:0019219!regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process!0.0164689418232576!4093;23426;4760;8929;2139;84969;3196;222894;4808$GO:0007501!mesodermal cell fate specification!0.0164689418232576!2139$GO:0043231!intracellular membrane-bound organelle!0.0164689418232576!4093;23426;4760;8929;2139;64377;84969;3196;94005;222894;54905;118429;4440;4808$GO:0043227!membrane-bound organelle!0.0164689418232576!4093;23426;4760;8929;2139;64377;84969;3196;94005;222894;54905;118429;4440;4808$GO:0006350!transcription!0.0164689418232576!4093;23426;4760;8929;2139;84969;3196;222894;4808$GO:0050794!regulation of cellular process!0.018115554288896!6752;4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0045165!cell fate commitment!0.0222460872433!4760;2139$GO:0048869!cellular developmental process!0.0222460872433!4760;51454;8929;2139;3196;4808$GO:0030154!cell differentiation!0.0222460872433!4760;51454;8929;2139;3196;4808$GO:0016070!RNA metabolic process!0.0222460872433!4093;23426;4760;1653;8929;2139;84969;3196;4808$GO:0016167!glial cell line-derived neurotrophic factor receptor activity!0.0222460872433!2675$GO:0050774!negative regulation of dendrite morphogenesis!0.0222460872433!3196$GO:0006355!regulation of transcription, DNA-dependent!0.0235101997012121!4093;23426;4760;8929;2139;84969;3196;4808$GO:0050789!regulation of biological process!0.0236139168726967!6752;4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0006351!transcription, DNA-dependent!0.0247288604075228!4093;23426;4760;8929;2139;84969;3196;4808$GO:0032774!RNA biosynthetic process!0.0247288604075228!4093;23426;4760;8929;2139;84969;3196;4808$GO:0044424!intracellular part!0.0262669635116243!8929;2139;84969;3196;94005;4808;118429;4093;23426;4760;64377;222894;1742;54905;160287;51454;4440$GO:0048814!regulation of dendrite morphogenesis!0.0266862685324948!3196$GO:0043229!intracellular organelle!0.0286528967531669!4093;23426;4760;8929;2139;64377;84969;3196;94005;222894;54905;1742;4808;118429;4440$GO:0043226!organelle!0.0286528967531669!4093;23426;4760;8929;2139;64377;84969;3196;94005;222894;54905;1742;4808;118429;4440$GO:0010467!gene expression!0.0286528967531669!4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0008266!poly(U) binding!0.0296413736381096!4440$GO:0050773!regulation of dendrite development!0.0296413736381096!3196$GO:0048813!dendrite morphogenesis!0.0296413736381096!3196$GO:0005783!endoplasmic reticulum!0.0310095440878635!23426;54905;94005;118429$GO:0065007!biological regulation!0.0310095440878635!6752;4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0001537!N-acetylgalactosamine 4-O-sulfotransferase activity!0.0310095440878635!64377$GO:0006911!phagocytosis, engulfment!0.0310095440878635!51454$GO:0004994!somatostatin receptor activity!0.0310095440878635!6752$GO:0003923!GPI-anchor transamidase activity!0.0310095440878635!94005$GO:0016255!attachment of GPI anchor to protein!0.0310095440878635!94005$GO:0007617!mating behavior!0.0348760096553614!4808$GO:0019098!reproductive behavior!0.0348760096553614!4808$GO:0006139!nucleobase, nucleoside, nucleotide and nucleic acid metabolic process!0.0348760096553614!4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0005515!protein binding!0.0363028831603493!6752;4093;23426;4760;3208;1653;124857;8929;3196;94005;1742;51454;118429$GO:0001710!mesodermal cell fate commitment!0.0374235450638049!2139$GO:0048333!mesodermal cell differentiation!0.0374235450638049!2139$GO:0045211!postsynaptic membrane!0.0374235450638049!23426;1742$GO:0042765!GPI-anchor transamidase complex!0.0417900332832!94005$GO:0044456!synapse part!0.0418186566332716!23426;1742$GO:0004459!L-lactate dehydrogenase activity!0.0435798547184848!160287$GO:0019642!anaerobic glycolysis!0.0435798547184848!160287$GO:0005844!polysome!0.0435798547184848!4440$GO:0004457!lactate dehydrogenase activity!0.0475412938402424!160287
|id=C85
|id=C85
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000073!1.67e-29!94;UBERON:0001016!1.67e-29!94;UBERON:0001017!4.03e-29!82;UBERON:0005743!2.49e-28!86;UBERON:0001049!1.39e-23!57;UBERON:0005068!1.39e-23!57;UBERON:0006241!1.39e-23!57;UBERON:0007135!1.39e-23!57;UBERON:0000955!9.67e-23!69;UBERON:0006238!9.67e-23!69;UBERON:0007023!4.38e-22!115;UBERON:0002616!1.89e-20!59;UBERON:0002780!4.67e-20!41;UBERON:0001890!4.67e-20!41;UBERON:0006240!4.67e-20!41;UBERON:0003080!9.53e-20!42;UBERON:0002020!3.15e-17!34;UBERON:0003528!3.15e-17!34;UBERON:0001893!5.71e-17!34;UBERON:0002346!9.23e-17!90;UBERON:0002791!2.12e-16!33;UBERON:0001869!2.20e-16!32;UBERON:0003075!1.31e-15!86;UBERON:0007284!1.31e-15!86;UBERON:0002619!1.40e-13!22;UBERON:0000956!3.20e-13!25;UBERON:0000203!3.20e-13!25;UBERON:0001950!1.88e-12!20;UBERON:0003056!3.47e-12!61;UBERON:0000924!1.67e-11!173;UBERON:0006601!1.67e-11!173;UBERON:0004121!1.31e-10!169;UBERON:0000153!1.42e-09!129;UBERON:0007811!1.42e-09!129;UBERON:0000033!2.00e-08!123
}}
}}

Revision as of 14:58, 21 May 2012


Full id: C85_neuroblastoma_carcinoid_retinoblastoma_small_pineal_rhabdomyosarcoma_medulloblastoma



Phase1 CAGE Peaks

Hg19::chr10:117803540..117803547,+p@chr10:117803540..117803547
+
Hg19::chr11:123567559..123567573,+p@chr11:123567559..123567573
+
Hg19::chr11:18477369..18477415,+p1@LDHAL6A
Hg19::chr11:39796850..39796855,+p@chr11:39796850..39796855
+
Hg19::chr11:8680006..8680010,-p@chr11:8680006..8680010
-
Hg19::chr11:8680046..8680060,-p@chr11:8680046..8680060
-
Hg19::chr11:8680082..8680102,-p@chr11:8680082..8680102
-
Hg19::chr12:120805876..120805897,-p6@MSI1
Hg19::chr12:133306843..133306848,-p27@ANKLE2
Hg19::chr12:14570875..14570907,+p@chr12:14570875..14570907
+
Hg19::chr12:14570928..14570945,+p@chr12:14570928..14570945
+
Hg19::chr12:66786385..66786419,-p13@GRIP1
Hg19::chr12:7527226..7527237,-p@chr12:7527226..7527237
-
Hg19::chr12:86777849..86777855,+p@chr12:86777849..86777855
+
Hg19::chr13:35778543..35778559,-p@chr13:35778543..35778559
-
Hg19::chr13:35778741..35778756,+p@chr13:35778741..35778756
+
Hg19::chr13:35782869..35782904,+p@chr13:35782869..35782904
+
Hg19::chr13:35804956..35804976,-p@chr13:35804956..35804976
-
Hg19::chr13:36045103..36045110,+p@chr13:36045103..36045110
+
Hg19::chr13:37494904..37494911,-p24@SMAD9
Hg19::chr13:37494987..37494992,-p23@SMAD9
Hg19::chr13:43873058..43873095,-p@chr13:43873058..43873095
-
Hg19::chr14:23466494..23466503,-p@chr14:23466494..23466503
-
Hg19::chr14:51057166..51057175,+p@chr14:51057166..51057175
+
Hg19::chr14:77387137..77387151,+p@chr14:77387137..77387151
+
Hg19::chr14:79880545..79880553,-p@chr14:79880545..79880553
-
Hg19::chr15:78914288..78914292,-p@chr15:78914288..78914292
-
Hg19::chr16:29825306..29825330,+p@chr16:29825306..29825330
+
Hg19::chr16:49733031..49733072,-p@chr16:49733031..49733072
-
Hg19::chr17:11389592..11389599,-p@chr17:11389592..11389599
-
Hg19::chr17:26891009..26891011,-p14@PIGS
Hg19::chr17:28903475..28903494,+p1@LRRC37BP1
Hg19::chr17:48911942..48911984,+p10@WFIKKN2
Hg19::chr17:50375199..50375224,+p@chr17:50375199..50375224
+
Hg19::chr17:66694330..66694333,-p@chr17:66694330..66694333
-
Hg19::chr17:7095595..7095641,-p5@DLG4
Hg19::chr17:7095642..7095662,-p17@DLG4
Hg19::chr17:7095665..7095701,-p4@DLG4
Hg19::chr17:7095704..7095716,-p25@DLG4
Hg19::chr17:71161140..71161174,+p1@SSTR2
Hg19::chr17:72104508..72104526,-p@chr17:72104508..72104526
-
Hg19::chr17:76713100..76713122,-p11@CYTH1
Hg19::chr17:77681118..77681143,+p1@HP09025
Hg19::chr18:18943559..18943587,+p@chr18:18943559..18943587
+
Hg19::chr18:22253333..22253348,+p@chr18:22253333..22253348
+
Hg19::chr18:435383..435391,-p@chr18:435383..435391
-
Hg19::chr19:34175642..34175654,+p3@CHST8
Hg19::chr19:41197501..41197540,+p1@CU680509
Hg19::chr19:4683283..4683314,-p@chr19:4683283..4683314
-
Hg19::chr1:11514263..11514273,-p@chr1:11514263..11514273
-
Hg19::chr1:116383701..116383706,-p9@NHLH2
Hg19::chr1:116383716..116383723,-p5@NHLH2
Hg19::chr1:116383738..116383752,-p1@NHLH2
Hg19::chr1:116908311..116908336,+p@chr1:116908311..116908336
+
Hg19::chr1:116908533..116908577,+p@chr1:116908533..116908577
+
Hg19::chr1:188791330..188791337,-p@chr1:188791330..188791337
-
Hg19::chr1:210789950..210789954,+p@chr1:210789950..210789954
+
Hg19::chr1:224847944..224847978,-p@chr1:224847944..224847978
-
Hg19::chr1:243557736..243557747,+p@chr1:243557736..243557747
+
Hg19::chr1:244419820..244419822,-p@chr1:244419820..244419822
-
Hg19::chr1:33351572..33351602,+p4@HPCA
Hg19::chr20:42667673..42667680,+p15@TOX2
Hg19::chr20:42863502..42863507,+p@chr20:42863502..42863507
+
Hg19::chr20:45523140..45523148,+p8@EYA2
Hg19::chr20:49838362..49838368,+p@chr20:49838362..49838368
+
Hg19::chr20:51453401..51453404,-p@chr20:51453401..51453404
-
Hg19::chr20:51511829..51511853,-p@chr20:51511829..51511853
-
Hg19::chr20:51511930..51511970,-p@chr20:51511930..51511970
-
Hg19::chr21:39288033..39288044,+p@chr21:39288033..39288044
+
Hg19::chr2:137523086..137523120,+p1@THSD7B
Hg19::chr2:137523123..137523134,+p3@THSD7B
Hg19::chr2:137523143..137523154,+p2@THSD7B
Hg19::chr2:137653110..137653113,+p@chr2:137653110..137653113
+
Hg19::chr2:15040249..15040252,+p@chr2:15040249..15040252
+
Hg19::chr2:15047375..15047384,+p@chr2:15047375..15047384
+
Hg19::chr2:15047385..15047399,+p@chr2:15047385..15047399
+
Hg19::chr2:15047410..15047415,+p@chr2:15047410..15047415
+
Hg19::chr2:15049487..15049491,-p@chr2:15049487..15049491
-
Hg19::chr2:15049978..15049987,-p@chr2:15049978..15049987
-
Hg19::chr2:15050016..15050024,-p@chr2:15050016..15050024
-
Hg19::chr2:15052822..15052826,-p@chr2:15052822..15052826
-
Hg19::chr2:15130380..15130381,-p@chr2:15130380..15130381
-
Hg19::chr2:15200068..15200072,-p@chr2:15200068..15200072
-
Hg19::chr2:156162072..156162084,+p@chr2:156162072..156162084
+
Hg19::chr2:156162148..156162154,+p@chr2:156162148..156162154
+
Hg19::chr2:156287980..156287983,+p@chr2:156287980..156287983
+
Hg19::chr2:15691754..15691803,-p@chr2:15691754..15691803
-
Hg19::chr2:15694908..15694923,-p@chr2:15694908..15694923
-
Hg19::chr2:15694924..15694928,-p@chr2:15694924..15694928
-
Hg19::chr2:15694929..15694950,-p@chr2:15694929..15694950
-
Hg19::chr2:15694960..15694970,-p@chr2:15694960..15694970
-
Hg19::chr2:15703776..15703783,+p@chr2:15703776..15703783
+
Hg19::chr2:15731289..15731298,+p6@DDX1
Hg19::chr2:15731692..15731705,-p@chr2:15731692..15731705
-
Hg19::chr2:15731732..15731744,-p@chr2:15731732..15731744
-
Hg19::chr2:15731782..15731899,-p@chr2:15731782..15731899
-
Hg19::chr2:15731901..15731913,-p@chr2:15731901..15731913
-
Hg19::chr2:15731978..15732050,+p1@DDX1
Hg19::chr2:15732427..15732439,-p@chr2:15732427..15732439
-
Hg19::chr2:15732443..15732474,-p@chr2:15732443..15732474
-
Hg19::chr2:15740801..15740812,+p@chr2:15740801..15740812
+
Hg19::chr2:15748757..15748764,+p@chr2:15748757..15748764
+
Hg19::chr2:15748808..15748813,+p@chr2:15748808..15748813
+
Hg19::chr2:15750164..15750182,+p@chr2:15750164..15750182
+
Hg19::chr2:15750783..15750790,+p@chr2:15750783..15750790
+
Hg19::chr2:15750933..15750939,+p@chr2:15750933..15750939
+
Hg19::chr2:15750941..15750967,+p@chr2:15750941..15750967
+
Hg19::chr2:15771117..15771141,+p@chr2:15771117..15771141
+
Hg19::chr2:15775085..15775089,+p@chr2:15775085..15775089
+
Hg19::chr2:15784374..15784378,+p@chr2:15784374..15784378
+
Hg19::chr2:16082812..16082820,+p@chr2:16082812..16082820
+
Hg19::chr2:177021851..177021861,+p@chr2:177021851..177021861
+
Hg19::chr2:182543783..182543813,-p6@NEUROD1
Hg19::chr2:189159028..189159031,+p36@GULP1
Hg19::chr2:74741642..74741658,+p2@TLX2
Hg19::chr2:74968903..74968927,-p@chr2:74968903..74968927
-
Hg19::chr2:84790187..84790195,+p@chr2:84790187..84790195
+
Hg19::chr3:13084508..13084517,-p@chr3:13084508..13084517
-
Hg19::chr3:29684296..29684311,-p1@RBMS3-AS2
Hg19::chr4:119234424..119234465,-p7@PRSS12
Hg19::chr4:121579996..121580040,+p@chr4:121579996..121580040
+
Hg19::chr4:174440289..174440300,-p@chr4:174440289..174440300
-
Hg19::chr4:174440376..174440389,-p@chr4:174440376..174440389
-
Hg19::chr4:174446653..174446657,-p@chr4:174446653..174446657
-
Hg19::chr4:174446687..174446692,-p@chr4:174446687..174446692
-
Hg19::chr4:174954376..174954399,-p@chr4:174954376..174954399
-
Hg19::chr4:174955165..174955170,-p@chr4:174955165..174955170
-
Hg19::chr4:174968748..174968753,+p@chr4:174968748..174968753
+
Hg19::chr4:175041125..175041137,-p@chr4:175041125..175041137
-
Hg19::chr4:175041762..175041777,-p2@ENST00000503140
Hg19::chr4:175041780..175041792,-p3@ENST00000503140
Hg19::chr4:175131715..175131722,+p@chr4:175131715..175131722
+
Hg19::chr4:175131785..175131801,+p@chr4:175131785..175131801
+
Hg19::chr4:175195325..175195356,-p@chr4:175195325..175195356
-
Hg19::chr4:175204466..175204499,+p5@CEP44
Hg19::chr4:175204510..175204534,+p4@CEP44
Hg19::chr4:175204540..175204549,+p11@CEP44
Hg19::chr4:175204865..175204915,+p2@CEP44
Hg19::chr4:175257438..175257442,+p@chr4:175257438..175257442
+
Hg19::chr4:175259387..175259388,+p1@AK125844
Hg19::chr4:175259702..175259704,+p2@AK125844
Hg19::chr4:3747792..3747806,+p@chr4:3747792..3747806
+
Hg19::chr4:41750047..41750056,-p7@PHOX2B
Hg19::chr4:41750057..41750078,-p3@PHOX2B
Hg19::chr4:41750310..41750322,+p2@ENST00000508038
Hg19::chr4:41750356..41750371,+p1@ENST00000508038
Hg19::chr4:41813448..41813455,-p@chr4:41813448..41813455
-
Hg19::chr4:41875745..41875750,-p@chr4:41875745..41875750
-
Hg19::chr4:80976472..80976514,-p33@ANTXR2
Hg19::chr4:80976547..80976566,-p30@ANTXR2
Hg19::chr4:85046693..85046696,-p@chr4:85046693..85046696
-
Hg19::chr4:85047369..85047375,-p@chr4:85047369..85047375
-
Hg19::chr5:112136808..112136818,+p@chr5:112136808..112136818
+
Hg19::chr5:120720126..120720131,-p@chr5:120720126..120720131
-
Hg19::chr5:134808885..134808888,-p@chr5:134808885..134808888
-
Hg19::chr5:178228030..178228032,-p@chr5:178228030..178228032
-
Hg19::chr5:178259802..178259818,-p@chr5:178259802..178259818
-
Hg19::chr5:178259821..178259898,-p@chr5:178259821..178259898
-
Hg19::chr5:38211560..38211569,-p@chr5:38211560..38211569
-
Hg19::chr5:68176275..68176277,-p@chr5:68176275..68176277
-
Hg19::chr6:117086007..117086014,-p@chr6:117086007..117086014
-
Hg19::chr6:123225630..123225667,+p@chr6:123225630..123225667
+
Hg19::chr6:16905685..16905689,+p@chr6:16905685..16905689
+
Hg19::chr6:16905879..16905882,+p@chr6:16905879..16905882
+
Hg19::chr6:23177224..23177279,-p1@ENST00000420572
Hg19::chr6:23177297..23177304,-p2@ENST00000420572
Hg19::chr6:23523310..23523315,+p@chr6:23523310..23523315
+
Hg19::chr6:3195997..3196015,-p1@LOC100507194
Hg19::chr6:33811774..33811788,+p@chr6:33811774..33811788
+
Hg19::chr6:65970038..65970044,-p@chr6:65970038..65970044
-
Hg19::chr6:79577709..79577716,+p@chr6:79577709..79577716
+
Hg19::chr6:79577721..79577739,+p@chr6:79577721..79577739
+
Hg19::chr6:79577742..79577749,+p@chr6:79577742..79577749
+
Hg19::chr7:1022943..1022954,+p3@CYP2W1
Hg19::chr7:1022973..1022988,+p2@CYP2W1
Hg19::chr7:131641304..131641315,+p@chr7:131641304..131641315
+
Hg19::chr7:18834859..18834879,-p@chr7:18834859..18834879
-
Hg19::chr7:18860636..18860637,-p@chr7:18860636..18860637
-
Hg19::chr7:18860660..18860668,-p@chr7:18860660..18860668
-
Hg19::chr7:18860675..18860696,-p@chr7:18860675..18860696
-
Hg19::chr7:18860722..18860728,-p@chr7:18860722..18860728
-
Hg19::chr7:18860743..18860764,-p@chr7:18860743..18860764
-
Hg19::chr7:18861111..18861118,-p@chr7:18861111..18861118
-
Hg19::chr7:18861136..18861151,-p@chr7:18861136..18861151
-
Hg19::chr7:19146256..19146270,-p@chr7:19146256..19146270
-
Hg19::chr7:19146281..19146282,-p@chr7:19146281..19146282
-
Hg19::chr7:19146371..19146419,-p@chr7:19146371..19146419
-
Hg19::chr7:19184929..19184938,-p4@FERD3L
Hg19::chr7:19185044..19185056,+p@chr7:19185044..19185056
+
Hg19::chr7:19185475..19185487,-p1@FERD3L
Hg19::chr7:19185559..19185569,-p@chr7:19185559..19185569
-
Hg19::chr7:19185585..19185590,-p@chr7:19185585..19185590
-
Hg19::chr7:19185639..19185643,+p@chr7:19185639..19185643
+
Hg19::chr7:19186529..19186536,+p@chr7:19186529..19186536
+
Hg19::chr7:31330919..31330935,+p@chr7:31330919..31330935
+
Hg19::chr7:31342195..31342197,+p@chr7:31342195..31342197
+
Hg19::chr7:31342221..31342227,+p@chr7:31342221..31342227
+
Hg19::chr7:31342233..31342240,+p@chr7:31342233..31342240
+
Hg19::chr7:31726791..31726798,+p2@PPP1R17
Hg19::chr7:43000472..43000514,-p@chr7:43000472..43000514
-
Hg19::chr7:54612889..54612921,+p@chr7:54612889..54612921
+
Hg19::chr7:79220418..79220423,+p@chr7:79220418..79220423
+
Hg19::chr7:79220442..79220449,+p@chr7:79220442..79220449
+
Hg19::chr7:79220491..79220512,+p@chr7:79220491..79220512
+
Hg19::chr7:79224173..79224178,+p@chr7:79224173..79224178
+
Hg19::chr7:79351016..79351020,+p@chr7:79351016..79351020
+
Hg19::chr7:79510641..79510652,+p@chr7:79510641..79510652
+
Hg19::chr7:79512462..79512500,+p@chr7:79512462..79512500
+
Hg19::chr8:104664732..104664739,+p@chr8:104664732..104664739
+
Hg19::chr8:21669826..21669866,-p6@GFRA2
Hg19::chr8:21743352..21743370,-p@chr8:21743352..21743370
-
Hg19::chr8:84824920..84824939,+p1@ENST00000523678
Hg19::chr8:85087398..85087406,-p@chr8:85087398..85087406
-
Hg19::chr8:85087424..85087449,-p@chr8:85087424..85087449
-
Hg19::chr9:120324983..120325003,-p@chr9:120324983..120325003
-
Hg19::chr9:26936427..26936432,-p@chr9:26936427..26936432
-
Hg19::chrX:12989627..12989651,+p@chrX:12989627..12989651
+
Hg19::chrX:12989653..12989663,+p@chrX:12989653..12989663
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0007399nervous system development0.000171765853094219
GO:0048731system development0.0017186126688088
GO:0007275multicellular organismal development0.00189814892299092
GO:0032502developmental process0.00343797603353163
GO:0048856anatomical structure development0.00343797603353163
GO:0032501multicellular organismal process0.00780958209236935
GO:0010468regulation of gene expression0.00780958209236935
GO:0031323regulation of cellular metabolic process0.00848662852663684
GO:0019222regulation of metabolic process0.0118067418075942
GO:0005737cytoplasm0.0143010395208181
GO:0045449regulation of transcription0.0164689418232576
GO:0007417central nervous system development0.0164689418232576
GO:0019219regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.0164689418232576
GO:0007501mesodermal cell fate specification0.0164689418232576
GO:0043231intracellular membrane-bound organelle0.0164689418232576
GO:0043227membrane-bound organelle0.0164689418232576
GO:0006350transcription0.0164689418232576
GO:0050794regulation of cellular process0.018115554288896
GO:0045165cell fate commitment0.0222460872433
GO:0048869cellular developmental process0.0222460872433
GO:0030154cell differentiation0.0222460872433
GO:0016070RNA metabolic process0.0222460872433
GO:0016167glial cell line-derived neurotrophic factor receptor activity0.0222460872433
GO:0050774negative regulation of dendrite morphogenesis0.0222460872433
GO:0006355regulation of transcription, DNA-dependent0.0235101997012121
GO:0050789regulation of biological process0.0236139168726967
GO:0006351transcription, DNA-dependent0.0247288604075228
GO:0032774RNA biosynthetic process0.0247288604075228
GO:0044424intracellular part0.0262669635116243
GO:0048814regulation of dendrite morphogenesis0.0266862685324948
GO:0043229intracellular organelle0.0286528967531669
GO:0043226organelle0.0286528967531669
GO:0010467gene expression0.0286528967531669
GO:0008266poly(U) binding0.0296413736381096
GO:0050773regulation of dendrite development0.0296413736381096
GO:0048813dendrite morphogenesis0.0296413736381096
GO:0005783endoplasmic reticulum0.0310095440878635
GO:0065007biological regulation0.0310095440878635
GO:0001537N-acetylgalactosamine 4-O-sulfotransferase activity0.0310095440878635
GO:0006911phagocytosis, engulfment0.0310095440878635
GO:0004994somatostatin receptor activity0.0310095440878635
GO:0003923GPI-anchor transamidase activity0.0310095440878635
GO:0016255attachment of GPI anchor to protein0.0310095440878635
GO:0007617mating behavior0.0348760096553614
GO:0019098reproductive behavior0.0348760096553614
GO:0006139nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.0348760096553614
GO:0005515protein binding0.0363028831603493
GO:0001710mesodermal cell fate commitment0.0374235450638049
GO:0048333mesodermal cell differentiation0.0374235450638049
GO:0045211postsynaptic membrane0.0374235450638049
GO:0042765GPI-anchor transamidase complex0.0417900332832
GO:0044456synapse part0.0418186566332716
GO:0004459L-lactate dehydrogenase activity0.0435798547184848
GO:0019642anaerobic glycolysis0.0435798547184848
GO:0005844polysome0.0435798547184848
GO:0004457lactate dehydrogenase activity0.0475412938402424



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
regional part of nervous system1.67e-2994
nervous system1.67e-2994
central nervous system4.03e-2982
neural tube1.39e-2357
neural rod1.39e-2357
future spinal cord1.39e-2357
neural keel1.39e-2357
brain9.67e-2369
future brain9.67e-2369
adult organism4.38e-22115
regional part of brain1.89e-2059
regional part of forebrain4.67e-2041
forebrain4.67e-2041
future forebrain4.67e-2041
anterior neural tube9.53e-2042
gray matter3.15e-1734
brain grey matter3.15e-1734
telencephalon5.71e-1734
neurectoderm9.23e-1790
regional part of telencephalon2.12e-1633
cerebral hemisphere2.20e-1632
neural plate1.31e-1586
presumptive neural plate1.31e-1586
regional part of cerebral cortex1.40e-1322
cerebral cortex3.20e-1325
pallium3.20e-1325
neocortex1.88e-1220
pre-chordal neural plate3.47e-1261
ectoderm1.67e-11173
presumptive ectoderm1.67e-11173
ectoderm-derived structure1.31e-10169
anterior region of body1.42e-09129
craniocervical region1.42e-09129
head2.00e-08123


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=Coexpression_cluster:C85&oldid=1708312"